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The Structural Studies of Interaction between Polyamine and Z-DNA

Research Project

Project/Area Number 09672201
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

OHISHI Hirofumi  Osaka University of Pharmaceutical Sciences, Assistant, 薬学部, 助手 (00211095)

Project Period (FY) 1997 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1999: ¥200,000 (Direct Cost: ¥200,000)
Fiscal Year 1998: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1997: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywordsleft handed Z-DNA / Polyamine / minor groove / X-ray crystallography / Molecular Dynamics / salt concentration / interaction / molecular design / 核酸 / 安定化機構 / コンピューター解析 / ポリアミン / 金属カウンターイオン / Z-DNA / B-Z転移 / 構造科学 / 遺伝子発現制御機構 / 発癌機構
Research Abstract

It was proven that the Z-DNA recognition protein made X-ray and crystal structure analysis in the complex crystal with Z-DNA in 1999 and that the protein is RNAaminase. It was proven that this protein was the enzyme which converts the guanine base of nucleic acid base into the adenine base. It has also been proven that there is the work that it causes the transfer abnormality in order to convert into the base that it converts the guanine bases of nucleic acid into the adenine base by it and is originally different from the base code of the protein as a purpose, and grows the protein of the purpose outside. Polyamine and mystery of Z-DNA are deepening more with the clarification of such fact. It has also been clarified that DNA becomes counterclockwise Z-DNA, when high-dense Polyamine is mixed with DNA. Then, it succeeded in the design of Polyamine which stabilizes Z-DNA we on clarifying various Polyamine and Z-DNA complex crystal structure in order to examine interaction mode of variou … More s Polyamine and DNA, and on clarifying the action for Z-DNA of Polyamine. Then, further we design these Polyamine, and in addition, complex crystal between Polyamine and Z-DNA which seem to powerfully stabilize Z-DNA is made, and X-ray crystal structure analysis will be done. In addition, sequence and relevance to Z-DNA will be clarified using X-ray crystal structure analysis method, since that the sequence dependence is in the possibility of Z-DNA has also been proven. It has been proven that it is stabilized with in computer science research using molecular dynamics method, it stabilizes Z-DNA by metal ion, and in addition, the metallic mass increases. When the Polyamine exist together with metal counter ion, as the concentration of the metal ions is low level the Z-DNA is stabilized. However, it was also proven that Z-DNA could not be stabilized in the Polyamine simple substance. In addition, that it did not become Z-DNA even in what kind of condition by the molecular dynamics calculation in (d(AC)ィイD24ィエD2/d(TG)ィイD24ィエD2) sequence clarified. Less

Report

(4 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • 1997 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Hirofumi Ohishi: "The Computation Studies on the Conformation-stabilizing Factors of the Left-handed Z-DNA"Nucleoside and Nucleotide. 18. 1571-1573 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ken-ichi Tomita: "Crystal Structure of a Left-handed Z-DNA Hexamer, d(CG)_3 Duplex Complexed with Synthetic Polyamine Binding of a Polyamine in the Minor Groove at Room Temperature"Nucleoside and Nucleotide. 18. 1567-1569 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Seiji Komeda: "An NMR study and crystal structure of [{cis-Pt(NH_3)_2(9EtG-kN7)}_2-(μ-pz)][NO_3]_3(9EtG=9-ethylguanine) as a model compound for the 1, 2-intrastrand GG crosslink"J. Chem. Soc., Dalton Trans.. 2959-2962 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shinya Harusawa: "Synthesis of Imifuramine and its Stereoisomers Exibiting Histamine H3-Agonistic Activity"Tetrahedron Letters. 40. 2561-2564 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hironori Ohtsu: "Standishinal, a Novel Carbon Skeletal Diterpene from the Bark of Thuja standishii[Gorg.] Carr"Tetrahedron Letters. 40. 6419-6422 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshiji Takemoto: "Utility of a Diene-Tricarbonyliron Complex as a Mobile Chiral Auxiliary : Regio and Stereocontrolled Functionalization of Acyclic Diene Ligands"J. Am. Chem. Soc.. 121. 9143-9154 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ken-ichi Tomita, Toshio Hakoshima, Kouichi Inubushi, Shoko Kunisawa, Hirofumi Ohishi, Gijs van der Marel, Jacques H. van Boom, Andrew H. J. Wang, and Alexander Rich: "Polyamine interaction with Z-DNA"Journal of Molecular Graphics. 7. 71-75 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Shoko Kunisawa, Gijs van der Marel, Jacques H. van Boom, Alexander Rich, Andrew H. J. Wang, Ken-ichi Tomita, and Toshio Hakoshima: "Interaction between the left-handed Z-DNA and polyamine ; The crystal structure of the d(CG), and N-(2-aminoethyl)-1, 4-diaminobutane complex"FEBS Letters. 284. 238-244 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Isao Nakanishi, Kouichi Inubushi, Gijs van der Marel, Jacques H. van Boom, Alexander Rich, Andrew H. J. Wang, Toshio Hakoshima, and Ken-ichi Tomita: "Interaction between the left-handed Z-DNA and polyamine-2 :The crystal structure of the d(CG), and spermidine complex"FEBS Letters. 391. 153-156 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Noriko Terasoma, Isao Nakanishi, Gijs van der Marel, Jacques H. van Boom, Alexander Rich, Andrew H. J. Wang, Toshio Hakoshima, and Ken-ichi Tomita: "Interaction between the left-handed Z-DNA and Polyamine-3 : The crystal structure of the D(CG), and N-(3-aminopropyl)-N-(5-aminopropyl)-1,4-diaminobutane (Thermospermine) complex"FEBS Letters. 398. 291-296 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Isao Nakanishi, and Ken-ichi Tomita: "Comparison of a Left-handed Z-DNA Molecular Structure Determined by X-rays with that Simulated by Molecular Dynamics"Biochemical and Biophysical Research Communications. 236. 146-150 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Hidehito Urate, Masao Akagi, and Ken-ichi Tomita: "The Crystal Structure of (±)-Cyclocytidine Analogue having a Low Anti Conformation Around Glycosyl Bond"Acta Cryst.. C54. 809-890 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Isao Nakanishi, Ken-ichi Tomita, and Toshimasa Ishida: "The Computation Studies on the Conformation-stabilizing Factors of the Left-handed Z-DNA"Nucleoside and Nucleotide. 18. 1571-1573 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ken-ichi Tomita, Hirofumi Ohishi, Isao Nakanishi, Toshio Hakoshima, and Alexander Rich: "Crystal Structure of a Left-handed Z-DNA Hexamer, d(CG), Duplex Complexed with Synthetic Polyamine Binding of a Polyamine in the Minor Groove at Room Temperature"Nucleoside and Nucleotide. 18. 1567-1569 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Seiji Komeda, Hirofumi Ohishi, Hirotoshi Yamane, Michinori Harikawa, Ken-ichi Sakaguchi and Masahiko Chikuma: "An NMR study and crystal structure of [{cis-Pt(NHィイD23ィエD2)ィイD22ィエD2(9EtG-kN7)}ィイD22ィエD2-(μpz)}[NOィイD23ィエD2]ィイD23ィエD2(9EtG=9-ethylquanine) as a model compound for the 1,2-intrastrand GG crosslink"J. Chem. Soc., Dalton Trans.. 2959-2962 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi, Isao Nakanishi, Toshio Hakoshima, Ken-ichi Tomita, and Alexander Rich: "Crystal Structure of a Left-handed Z-DNA Hexamer, d(CG), Duplex Complexed with Synthetic Polyamine Binding in the Minor Groove at Room Temperature"J. Mol. Biol.. (in preparation). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hirofumi Ohishi: "The Computation Studies on the Conformation-stabilizing Factors of the Left-handed Z-DNA"Nucleoside and Nucleotide. 18. 1571-1573 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ken-ichi Tomita: "Crystal Structure of a Left-handed Z-DNA Hexamer, d(CG)_3 Duplex Complexed with Synthetic Polyamine Binding of a Polyamine in the Minor Groove at Room Temperature"Nucleoside and Nucleotide. 18. 1567-1569 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Seiji Komeda: "An NMR study and crystal structure of [{cis-Pt(NH_3)_2(9EtG-kN7)}_2-(μ-pz)][NO_3]_3(9EtG=9-ethylguanine)as a model compound for the 1,2-intrastrand GC crosslink"J. Chem. Soc., Dalton Trans.. 2959-2962 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Shinya Harusawa: "Synthesis of Imifuramine and its Stereoisomers Exibiting Histamine H3-Agonistic Activity"Tetrahedron Letters. 40. 2561-2564 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hironori Ohtsu: "Standishinal, a Novel Carbon Skeletal Diterpene form the Bark of Thuja standishii[Gorg.]Carr."Tetrahedron Letters. 40. 6419-6422 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yoshiji Takemoto: "Utility of a Diene-Tricarbonyliron Complex as a Mobile Chiral Auxiliary:Regio and Stereocontrolled Functionalization of Acyclic Diene Ligands"J.Am.Chem.Soc.. 121. 9143-9154 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 大石 宏文: "A(+-)-Cyclocytidine Analogue with a Low-anti Conformation around the Glycosyl Bond" Acta Cryst.C54. 980-982 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 前崎 直容: "Stereoselective Synthesis of a 2,2,5-Trisubsituted Tetrahydropyran Chiron via 1,3- and 1,6-Asymmetric Induction:A Total Synthesis of (-)-Malyngolide" Tetrahedron. 54. 13087-13104 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 大石 宏文: "The Computational Studies on the Conformation-stabilizing Factors of the left-handed Z-DNA" Nucleosides & Nucleotides. 18(in press). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] 冨田 研一: "Crystal Structure of a Left-handed Z-DNA Hexamer,d(CG)_3,Duplex Complexed with Synthetic Polyamine Reveals Binding of a Polyamine in the Minor Groove" Nucleosides & Nucleotides. 18(in press). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ken-ichi Tomita: "The Interaction between Z-DNA and Polyamines" Jounal of Molecular Graphics. 7. 71-75 (1989)

    • Related Report
      1997 Annual Research Report
  • [Publications] Hirofumi Ohishi: "Interaction between the left-handed Z-DNA and polyamine The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex" FEBS Letters. 284. 238-244 (1991)

    • Related Report
      1997 Annual Research Report
  • [Publications] Hirofumi Ohishi: "Interaction between the left-handed Z-DNA and polyamine-2 The crystal structure of the d(CG)_3 and spermidine complex" FEBS Letters. 391. 153-156 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Hirofumi Ohishi: "Interaction between left-handed Z-DNA and polyamine-3 The crystal structure of the d(CG)_3 and thermospermine complex" FEBS Letters. 398. 291-296 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] Hirofumi Ohishi: "Comparison of a Left-Handed Z-DNA Molecular Structure Determined by X-Rays with That Simulated by a Molecular Dynamics" Biochemical and Biophysical Research Communications. 236. 146-150 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Hirofumi Ohishi: "The Crystal Structure of(±)-Cyclocytidine Analogue Having a Low Anti Conformation Around Glycosyl Bond" Acta Crystallographica Section C. 54(in press). (1998)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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