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Structural basis of novel quadruplex-duplex switching of nucleic acids

Research Project

Project/Area Number 09680648
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionYokohama National University

Principal Investigator

KATAHIRA Masato  Yokohama National University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (70211844)

Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 1998: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1997: ¥2,200,000 (Direct Cost: ¥2,200,000)
KeywordsDNA / RNA / NMR / quadruplex / duplex / telomere / protein / antitumor drug / 金属イオン / ドラッグ / リボザイム
Research Abstract

The novel quadruplex and duplex structures of d(GGAGGA), formed in the presence and absence of potassium ions, respectively, were determined by NMR.It is notable that the duplex structure is composed exclusively of non-standard G : G and A : A basepairs.
It was found for the first time that the RNA-binding protein, hnRNP D0 has the ability to transform the quadruplex structure to a single-stranded form. The structures and interactions with RNA of hnRNP DO and the related protein, Musashi1, were determined by NMR.It was suggested that this unique activity may be related to the maintenance of the telomere.
The structure of the novel antitumor drug, UCH9, complexed with DNA was determined by NMR.The B-form to A-form structural transition caused by drug-binding was identified, and its biological significance was implied.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Katahira他: "Structure and interactions with RNA of the N-terminal UUAG-specific domain of hnRNPD0"J. Mol. Biol.. 287. 221-237 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira他: "Structure backbone dynamics and interactions with RNA of the c-terminal RNA-binding domain of Musashi1"J. Mol. Biol.. 287. 314-330 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira他: "Two metal binding sites in a lead ribozyme bound to competitively by Pb^<2+> and Mg^<2+>"Eur. J. Biochem.. 255. 727-733 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira他: "Structural characterization of a DNA duplex modeled on the polypurine tract"Nucleosides & Nucleotides. 17. 831-841 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira他: "Solution structure of the novel antitumordrug,UCH9,complexed with d(TTGGCCAA)_2 by NMR"Nucleic Acids Res.. 26. 744-755 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira他: "Activation and repression of the activity of a lend ribozyme by the combination of Pb^<2+> and Mg^<2+>"J. Biochem. 122. 1062-1067 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto.T.: "Properties of a hammerhead ribozyme with deletion of stemII"J. Biochem.. 121. 288-294 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto,T.: "Properties of hepatitis delta virus ribozyme,which consists of three RNA oligomer stands"J. Biochem. 121. 1123-1128 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto,T.: "Hairpin structure of an RNA 28-mer,which contains a sequence of the enzyme component of a hammerhead ribozyme system:evidence for tandem G:A pairs that are not of side-by-side type"J. Biochem. 122. 556-562 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kurihara.Y: "Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein,mouse-Musashi-1"Gene. 186. 21-27 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Horiuchi,M: "Dimerization and DNA binding facilitate α-helix formation of Max in solution"J. Biochem. 122. 1062-1067 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka,Y.: "Structure-activity correlation for an HDV ribozyme composed of three RNA stands"Nucleic Acids symp.Ser.. 37. 309-310 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kobayashi,S: "The structures of nucleic acids composed exclusively of non-standard base pairs"Nucleic Acids Symp Ser.. 37. 103-104 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira,M.: "Duplex structure with asymmetric G:G base pairs"Nucleic Acids symp Ser. 39. 119-120 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka,Y.: "Structural investigation of HDV ribozymos by NMR spectroscopy"Nucleic Acids Symp Ser. 39. 147-148 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto, T.: "Properties of a hammerhead ribozyme with delection of stem II" J.Biochem.121. 288-294 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto, T.: "Properties of hepatitis dalta virus ribozyme, which consists of three RNA oligomer strands" J.Biochem.121. 1123-1128 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sakamoto, T.: "Hairpin structure of an RNA 28-mer, which contains a sequence of the enzyme component of a hammerhead ribozyme system : evidence for tandem G : A pairs that are not of side-by-side type" J.Biochem.122. 556-562 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kurihara, Y.: "Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1" Gene. 186. 21-27 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Horiuchi, M.: "Dimerization and DNA binding facilitate alpha-helix formation of Max in solution" J.Biochem.122. 711-716 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kim, M.: "Activation and repression of the activity of a lead ribozyme by the combination of Pb2+ and Mg2+" J.Biochem.122. 1062-1067 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka, Y.: "Structure-activity correlation for an HDV ribozyme composed of three RNA strands" Nucleic Acids Symp.Ser.No.37. 309-310 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kobayashi, S.: "The structures of nucleic acids composed exclusively of non-standard base pairs" Nucleic Acids Symp.Ser.No.37. 103-104 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira, R.: "Solution structure of the novel antitumor drug, UCH9, complexed with d (TTGGCCAA) 2, as determined by NMR spectroscopy" Nucleic Acids Res.26. 744-755 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kanagawa, M.: "Structural characterization of a DNA duplex modeled on a DNA : RNA hybrid of the polypurine tract recognized by a reverse transcriptase" Nucleosides & Nucleotides. 17. 831-841 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira, M.: "Two metal binding sites bound to competitively by Pb2+ and Mg2+, and induced structural change of a lead ribozyme, as revealed by NMR" Eur.J.Biochem.255. 727-733 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira, M.: "Duplex structure with asymmetric G : G basepairs" Nucleic Acids Symp.Ser.No.39. 119-120 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Tanaka, Y.: "Structural investigation of HDV ribozymes by NMR spectroscopy" Nucleic Acids Symp.Ser.No.39. 147-148 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nagata, T.: "Structure and interactions with RNA of the N-terminal UUAG-specific domain of hnRNP D0" J.Mol.Biol.287. 221-237 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nagata, T.: "Structure backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1" J.Mol.Biol.287. 314-330 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Katahira 他: "Structure and interactions with RNA of the N-terminal UUAG-Specific domain of hnRNPDO" J.Mol.Biol.287. 221-237 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Katahira 他: "Structmre,backbone dynamics and interactions with RNA of the C-terminal RNA・binding domain of Musashi 1" J.Mal.Biol.287. 314-330 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Katahira 他: "Two metal binding sites in a leabd ribozyme bound to competitiuely by Pb^<2+> and Mg^<2+>" Eur.J.Biochem.255. 727-733 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Katahira 他: "Structural chara cterization of a DNA duplex modeled on the polypurine tract" Nucleosides & Nucleotides. 17. 831-841 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Katahira 他: "Solution Structure of the novel antitumor drug,VCHq,complexed with dCTTGGCC.AAI_2 by NMR" Nucleic Acids Res.26. 744-755 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Katahira 他: "Actiration and repression of the activity of a lead ribozyme by the combination of Pb^<2+> and Mg^<2+>" J.Biochem. 122. 1062-1067 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sakamoto,T., Katahira,M.et al.: "HAIRPIN STRUCTURE OF AN RNA 28-MER, WHICH CONTAINS A SEQUENCE OF THE ENZYME COMPONENT OF A HAMMERHEAD RIBOZYME SYSTEM" J.Biochemistry. 122. 556-562 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Sakamoto,T., Katahira,M.et al.: "Properties of hepatitis δ Virus ribozyme, which consists of three RNA oligomer strands" J.Biochemistry. 121. 1123-1128 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Kim,M,H., Katahira,M.et al.: "Activation unel repression of the aitivity of a lead ribozyme by the combination of PD^<2+> and Mu^<2+>" J.Biochemistry. 122. 1062-1067 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Kurihara,Y., Katahira,M.et al.: "Structural properties of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1" Gene. 186. 21-27 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Sakamo,t,T., Katahira,M.et al.: "Properties of a hammerhead ribozyme with aeletion of stemII" J.Biochemistry. 121. 288-294 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Katahira,R., Katahira,M.et.al.: "Solution structure of the norel antitumer drug, UCHq, conplexed with d (TTGGCCAA) _2, as determined by NMR" Nucleic Acids Research. 26(in press). (1988)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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