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Construction of the chromosome map of hamster and Suncus by FISH using human and mouse cDNA clones

Research Project

Project/Area Number 09680829
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Laboratory animal science
Research InstitutionNagoya University

Principal Investigator

MATSUDA Yoichi  Nagoya University, School of Agricultural Sciences, Associate Professor, 農学部, 助教授 (70165835)

Project Period (FY) 1997 – 1998
Project Status Completed (Fiscal Year 1998)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 1998: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1997: ¥2,100,000 (Direct Cost: ¥2,100,000)
KeywordsFISH / chomosome map / mouse / rat / hamster / Suncus / cDNA clone / chromosome synteny / cDNA / 染色体マッピング / 機能遺伝子 / 比較染色体地図 / 染色体相同性
Research Abstract

The construction of comparative chromosome map is one of useful approaches for identifiing chromosome rearrangements and chromosomal homology between different animal species.
In this study, we constructed comparative maps of Syrian hamster and Chinese hamster to mouse and rat by the direct R-banding fluorescence in situ hybridization (FISH) using mouse and rat cDNA clones. We identified twenty-six and thirteen chromosomal regions with conserved linkage homology to mouse in Syrian and Chinese hamsters, respectively. In comparison between mouse-rat and mouse-Syrian hamster comparative chromosome maps, our results indicated a possibility that there are more chromosome rearrangements between mouse and Syrian hamster chromosomes than between mouse and rat chromosomes.
To estimate the process of X chromosome rearrangements in Rodentia animals, we constructed cytogenetic maps of mouse (M.m. domesticus), rat, Syrian hamster, Chinese hamster and Indian spiny mouse (M.platythrix) X chromosomes with twenty-six functional genes, which have been mapped on human X chromosome. The comparison of the gene orders indicated the presence of four chromosome segments with conserved linkage homology between mouse and rat X chromosomes. However, the gene orders were the same among rat, Syrian hamster, Chinese hamster and Indian spiny mouse X chromosomes with the exception of two genes. The gene orders in these species were similar to that of human X chromosome. These results suggested that numerous X chromosome rearrangements accumulated in mouse, and that Indian spiny mouse X chromosome is closely related to the ancestral mammalian X chromosome. We found several chromosome segments with different gene orders in Suncus murinus compared with mouse and human X chromosomes.

Report

(3 results)
  • 1998 Annual Research Report   Final Research Report Summary
  • 1997 Annual Research Report
  • Research Products

    (53 results)

All Other

All Publications (53 results)

  • [Publications] Yoshida,K.et al.: "The mouse RecA-like gene,Dmc 1 is required for homologous chromosome synapsis during meiosis." Molecular Cell. 1. 707-718 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nomiyama,H.et al.: "The human CC chemokine TECK(SCYA25)maps to chromosome 19p13.2." Genomics. 51. 311-312 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Matsushima,Y.et al.: "Cloning and genomic mapping of matrin 3 gene and its pseudogene." Cytogenetics Cell Genetics. 81. 194-198 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kuroiwa,A.et al.: "FISH mapping of mouse and rat homologues of twenty-five human X-linked genes." Cytogenetics Cell Genetics. 81. 208-212 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Saito,T.et al.: "Structure,expression profile and chromosome location of a mouse gene homologous to human DNA-Pkcs interacting protein(KIP)gene." Mammalian Genome. in press.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kuramochi,S.et al.: "Molecular cloning of the human gene STK10 encoding LOK(lymphocyte-oriented kinase)and comparative chromosomal mapping of the human,mouse and rat homologue." Immunogenetics. in press.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Saito, T.: "Localization of ZAP-70, the gene for a T cell-specific protein tyrosine kinase, to mouse and rat chromosomes by fluorescence in situ hybridization and molecular linkage analysis." Mammal.Genome. 8. 45-46 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yamao, T.: "Mouse and human SHPS-1 : molecular cloning of cDNAs and chromosomal localization of genes." Biochem.Biophy.Res.Com.231. 61-67 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Matsuda, Y.: "Chrmosomal mapping of the mouse and rat brt genes." Genomics. 40. 181-184 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Okuizumi, H.: "Linkage map of Syrian hamster with restriction landmark genome scanning." Mammal.Genome. 8. 121-128 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Ema, M.: "A novel bHLH-PAS factor with close sequence similarity to hypoxia-inducible factor 1 alpha regulates the VEGF expression and is potentially involved in lung and vascular development." Proc.Natl.Acad.Sci.USA. 94. 4273-4278 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nigro, V.: "Identification of the Syrian hamster cardiomyopathy gene." Hum.Mol.Genet.6. 601-607 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Endo, K.: "Mdes, a mouse homologue of the Drosophila degenerative spermatocyte gene is expressed in pachytene spermatocytes during mouse spermatogenesis." Develop.Growth Differ.39. 399-403 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Meno, C.: "Two closely-related left-right asymmetrically exoressed genes, lefty-1 and lefty-2 : their distinct expression domains, chromosomal linkage and direct neuralizing activity in Xenopus embryos." Genes to Cell.3. 513-524 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kimura: "cDNA cloning, characterization, and chromosomal mapping of UBE2E2 encoding a human ubiquitin-conjugating E2 enzyme." Cytogenet.Cell Genet.78. 107-111 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Mandai, K.: "Afadin : A novel actin filament-binding protein with one PDZ domain localized at cadherin-based cell-to-cell adherens junction." J.Cell Biol.139. 517-528 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sermsuvitayawong, K.: "Genomic organization of Ampd3, heart-type AMPD gene, located in mouse Chromosome 7." Mammal.Genome. 8. 767-769 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Morisaki, T.: "Mouse Mef2b gene : Unique member of MEF2 gene family." J.Biochem.122. 939-946 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Saito, T.: "Comparative gene mapping of the human and mouse TEP1 genes, which encode one protein component of telomerase." Genomics. 46. 46-50 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nakashima.S.: "Molecular cloning and chromosome mapping of rat phospholipase D genes, pld1a, Pld1b and Pld2." Cytogenet.Cell Genet.79. 109-113 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kohda, K.: "Structural analysis and chromosomal localization of the mouse Psmb5 gene coding the for constitutively expressed beta-typeproteasome subunit." Immunogenetics. 47. 77-87 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yoshimura, T.: "Genetic mapping of the gene encoding rat serotonin N-acetyltransferase to ral and mouse chromosomes." Cytogenet.Cell Genet.79. 172-175 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kimura, M.: "Assignment of SYK6 to human Chromosome 20q13.2-13.3 and a pseudogene to 1q41-42." Cytogenet.Cell Genet.79. 201-203 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Fukuoka, S.-I.: "Assignment of Tamm-Horsfall Protein/uromodulin (Umod) to mouse and rat chromosome bands 7F1-F2 and 1q36-37 by in situ hybridization." Cytogenet.Cell Genet.79. 241-242 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kuroiwa, A.: "Association of tyrosine phosphatase SHP-1 and SHP-2, and inositol 5-phoshatase SHIP with gp49B1, and chromosomal assignment of the gene." J.Biol.Chem.273. 1070-1074 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Sagai, T.: "rim2 (recombination-induced mutation 2) is a new allele of pearl and a mouse model of human Hermansky-Pudlak Syndrome (HPS) : genetic and physical mapping." Mammal.Genome. 9. 2-7 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yamashita, Y.: "Genomic structures and chromosomal location of p91, a novel murine regulatory receptor family." J.Biochem.123. 358-368 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kohda, K.: "Characterization of the mouse PA28 activator complex gene family : Complete organization of the three member genes and a physical map of the -150-kb region containing the alpha-and beta-subunit genes." J.Immunol.160. 4923-4935 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yoshida, K.: "The mouse RecA-like gene, Dmc 1 is required for homologous chromosome synapsis during meiosis." Mol.Cell. 1. 707-718 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yan, J.: "Identification of mouse ULK1, a novel protein kinase structurally related to C.elegans UNC-51." Biochem.Biophys.Res.Com.246. 222-227 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Ishii, S.: "alpha-galactosidase transgenic mouse : Heterogeneous gene expression and posttranslational glycosylation in tissues." Glycoconjugate J.15. 591-594 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Nomiyama, H.: "The human CC chemokine TECK (SCYA25) maps to chromosome 19p13.2." Genomics. 51. 311-312 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Matsushima, Y.: "Cloning and genomic mapping of matrin 3 gene and its pseudogene." Cytogenet.Cell Genet.81. 194-198 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kuroiwa, A.: "Comparative FISH mapping of mouse and rat homologues of twenty-five human X-linked genes." Cytogenet.Cell Genet.81. 208-212 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kimura, M.: "Identification and characterization of STK12/Aik2 : A human gene related to aurora of Drosophila and yeast IPL1." Cytogenet.Cell Genet.82. 147-152 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Saito, T.: "Mouse Cdc21 only 0.5 kb upstream from Dna-pkcs in a head-to-head organization : an implication of co-evolution of ATM family members and cell cycle regulating genes." Mammal.Genome. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Fujimori, A.: "Cloning and mapping of Np95 gene which encodes a novel nuclear protein associated with cell proliferation." Mammal.Genome. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Saito, T.: "Structure, expression profile and chromosome location of a mouse gene homologous to human DNA-Pkcs interacting protein (KIP) gene." Mammal.Genome. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Oishi, I.: "Spatio-temporally regulated expression of receptor tyrosine kinases, mRor1, mRor2, during mouse development : implications in development and function of the nervous system." Genes to Cells. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kuramochi, S.: "Molecular cloning of the human gene STK10 encoding LOK (lymphocyte-oriented kinase) and comparative chromosomal mapping of the human, mouse and rat homologue." Immunogenetics. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Kimura, M.: "Molecular cloning and characterization of Aik3, a third human Aurora/Ipll-related kinase." J.Biochem.(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1998 Final Research Report Summary
  • [Publications] Yoshida, k.et al.: "The mouse RecA-like gene,Dmc 1 is required for homologous chromosome synapsis during meiosis." Molecular Cell. 1. 707-718 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nomiyama, H.et al.: "The human CC chemokine TECK(SCYA25)maps to chromosome 19p13.2." Genomics. 51. 311-312 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Matsushima, Y.et al.: "Cloning and genomic mapping of matrin 3 gene and its pseudogene." Cytogenetics and Cell Genetics. 81. 194-198 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kuroiwa, A.et al.: "FISH mapping of mouse and rat homologues of twenty-five human X-linked genes." Cytogenetics and Cell Genetics. 81. 208-212 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Fujimori, A.et al.: "Cloning and mapping of Np95 gene which encodes a novel nuclear protein associated with cell proliferation." Mammalian Genome. 9. 1032-1035 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kuramochi, S.et al.: "Molecular cloning of the human gene STK10 encoding LOK(lymphocyte-oriented kinase)and comparative chromosomal mapping of the human,mouse and rat homologue." Immunogenetics. in press.

    • Related Report
      1998 Annual Research Report
  • [Publications] Fukuoka, S.-I. and Matsuda, Y.: "Assignment of Tamm-Horsfall protein/uromodulin (Umod) to mouse and rat chromosome bands 7F1-F2 and 1q36-37 by situ hybridization." Cytogenetics and Cell Genetics. (印刷中).

    • Related Report
      1997 Annual Research Report
  • [Publications] Kuroiwa, A., Yamashita, Matsuda, Y.et al.: "Association of tyrosine phosphatase SHP-1 and SHP-2, and inositol 5-phosphatase SHIP with gp49B1, and chromosomal assignment of the gene." Journal of Biological Chemistry. 273. 1070-1074 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] Saito, T.,Matsuda, Y., Suzuki, T.et al.: "Comparative gene mapping of the human and mouse TEP1 genes, which encode one protein component of telomerase." Genomics. 46. 46-50 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Nigro, V., Okazaki,Y., Matsuda, Y.et al.: "Identification of the Syrian hamster cardiomyopathy gene." Human Molecular Genetics. 6. 601-607 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Matsuda, Y., Saito, T., Fujimoto, J.et al.: "Chrmosomal mapping of the mouse and rat brt genes." Genomics. 40. 181-184 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Saito, T., Matsuda, Y., Ito, H.et al.: "Localization of ZAP-70, the gene for a T cell-specific protein tyrosine kinase, to mouse and rat chromosomes by FISH and molecular linkage analysis." Mammalian Genome. 8. 45-46 (1997)

    • Related Report
      1997 Annual Research Report

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Published: 1997-04-01   Modified: 2016-04-21  

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