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局在スピンを持つ金属酵素活性中心とその模倣錯体の反応機構に関する理論的研究

Research Project

Project/Area Number 09J01376
Research Category

Grant-in-Aid for JSPS Fellows

Allocation TypeSingle-year Grants
Section国内
Research Field Inorganic chemistry
Research InstitutionOsaka University

Principal Investigator

齋藤 徹  大阪大学, 理学研究科, 特別研究員(DC1)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 2011: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2010: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2009: ¥700,000 (Direct Cost: ¥700,000)
Keywords近似スピン射影法 / スピン混入誤差 / 凝縮退分子系 / 化学反応 / ジラジカル / 単状態多配置参照法 / 擬縮退分子系 / 遷移金属錯体 / 非制限計算 / 局在スピン / スピン混入 / 非制限計算法 / 近似スピン射影構造最適化法 / 金属酵素活性中心 / 一重項酸素 / 密度汎関数法
Research Abstract

擬縮退分子系の電子状態の記述は量子化学計算の諸問題の一つである.本研究では遷移金属を含む系の化学反応の理論的解明を最終目的としているが,擬縮退問題に加え電子数が多いため実在系を精度良く記述するのは困難である.そこで最も基本的なジラジカル分子の電子状態及び分子構造を高精度に求めることを目的としている.本年度は昨年度に引き続き,近似スピン射影(AP)した非制限Hartree-Fock(UHF)に基づくCCSD(AP-UCCSD)法をジラジカル系に適用した.特に,シクロ環化合物が開環して1,3-双極子を生じる反応に着目した.その結果,10-100%のジラジカル性を有する様々な1,3-双極子に対してAP-UCCSD法の有用性を示すことができた.具体的にはmethylenecyclopropaneからtrimethylenemethaneが生成するエネルギープロファイルの場合,従来のUHF-CCSDの結果は反応座標の途中で相対エネルギーが過剰に安定化される.これはスピン混入によるものであり,スピン混入を取り除いたAP-UCCSD法の結果はUHF-CCSD法を大きく改善し,参照データとして用いている単状態多配置参照CCSD(MkCCSD)法と良く一致した.また,cyclopropanoneからoxyallylが生成する反応に関しては,従来のUHF-CCSDはoxyallylが遷移状態を経た後の反応中間体とみなすが,本研究のAP-UCCSD法から得られたoxyallylは遷移状態に相当する.また近似スピン射影法に基づく構造最適化(AP-opt)法を用いてoxyallylの最適化を行うと,反応障壁なしにcyclopropanoneを与えた.本研究から得られた計算結果は最近の分光学実験の結果と一致する.このように昨年度までに提案した手法をジラジカル種を含む化学反応に適用し,有用であることを実証した.

Report

(3 results)
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (44 results)

All 2012 2011 2010 2009

All Journal Article (29 results) (of which Peer Reviewed: 29 results) Presentation (15 results)

  • [Journal Article] Possible Mechanisms of Water Splitting Reaction Based on Proton and Electron Release Pathways Revealed for CaMn_4O_5 Cluster of PSII Refined to 1.9 Å X-Ray Resolution2012

    • Author(s)
      Toru Saito
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 112 Issue: 1 Pages: 253-276

    • DOI

      10.1002/qua.23218

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theory of Chemical Bonds in Metalloenzymes XVII. Symmetry Breaking in Manganese Cluster Structures and Chameleonic Mechanisms for the O-O Bond Formation of Water Splitting Reaction2012

    • Author(s)
      Toru Saito
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 112 Issue: 1 Pages: 121-135

    • DOI

      10.1002/qua.23255

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potential Energy Curve for Ring-Opening Reactions : Comparison Between Broken-Symmetry and Multireference Coupled Cluster Methods2011

    • Author(s)
      Toru Saito
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 115 Issue: 22 Pages: 5625-5631

    • DOI

      10.1021/jp201463h

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Singlet-Triplet Energy Gap for Trimethylenemethane, Oxyallyl Diradical and Related Species : Single and Multi-reference Computational Results2011

    • Author(s)
      Toru Saito
    • Journal Title

      Theoretical Chemistry Accounts

      Volume: 130 Issue: 4-6 Pages: 739-748

    • DOI

      10.1007/s00214-011-0914-z

    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Symmetry and Broken Symmetry in Molecular Orbital Description of Unstable Molecules IV. Comparison between Single- and Multi-reference Computational Results for Antiaromtic Molecules2011

    • Author(s)
      Toru Saito
    • Journal Title

      Theoretical Chemistry Accounts

      Volume: 130 Issue: 4-6 Pages: 749-763

    • DOI

      10.1007/s00214-011-0941-9

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on the structural and magnetic property of Arginase active site2011

    • Author(s)
      Toru Saito
    • Journal Title

      Supramolecular Chemistry

      Volume: 23 Pages: 22-28

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on the electronic structure of the synthetic complex of soluble methanemonooxygenase intermediate Q2011

    • Author(s)
      Toru Saito
    • Journal Title

      Supramolecular Chemistry

      Volume: 23 Pages: 83-87

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Broken-Symmetry Natural Orbital (BSNO)-Mk-MRCC study on the exchange coupling in the binuclear copper(II) compounds2011

    • Author(s)
      Toru Saito
    • Journal Title

      Chemical Physics Letters

      Volume: 印刷中

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies of the effect of orientation of ligands and spin contamination error on the chemical bonding in the Fe_2O_2 core in oxymyoglobin.2010

    • Author(s)
      Toru Saito
    • Journal Title

      Journal of Molecular Structure (THEOCHEM)

      Volume: 954 Pages: 98-104

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reinvestigation of the reaction of ethylene and singlet oxygen by approximate spin projection (AP)method.Comparison with multi-reference coupled-cluster (MRCC) calculations.2010

    • Author(s)
      Toru Saito
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 114 Pages: 7967-7974

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theory of chemical bonds in Metalloenzymes XIV.Correspondence between Magnetic Coupling Mode and Radical Coupling Mechanism in Hydroxylations with Methane Monooxygenase and Related Species.2010

    • Author(s)
      Toru Saito
    • Journal Title

      International Journal of Quantum Chemistry

      Volume: 110 Pages: 2955-2981

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MkMRCC, AP-UCC, AP-UBD calculations of didehydronated species : Comparison among calculated through-bond effective exchange integrals for diradicals.2010

    • Author(s)
      Toru Saito
    • Journal Title

      Molecular Physics

      Volume: 108 Pages: 2533-2541

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A broken-symmetry study on the automerization of cyclobutadiene.Comparison with UNO- and DNO-MRCC methods.2010

    • Author(s)
      Toru Saito
    • Journal Title

      Chemical Physics Letters

      Volume: 498 Pages: 253-258

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multireference character of 1,3-Dipolar Cycloaddition of Ozone with Ethylene and Acrylonitrile2010

    • Author(s)
      Toru Saito
    • Journal Title

      Journal of Physical Chemistry A

      Volume: 114 Pages: 12116-12123

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Which hybrid GGA DFT is suitable for Cu_2O_2 systems if the spin contamination error is removed?2010

    • Author(s)
      T.Saito, Y.Kataoka, Y.Nakanishi, T.Matsui, Y.Kitagawa, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Chemical Physics 368

      Pages: 1-6

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on chemical bonding between Cu(II)and oxygen molecule in type 3 copper proteins2009

    • Author(s)
      T.Saito, Y.Kataoka, Y.Nakanishi, T.Matsui, Y.Kitagawa, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3649-2658

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transition state optimization based on approximate spin-projection(AP)method2009

    • Author(s)
      T.Saito, S.Nishihara, Y.Kataoka, Y.Nakanishi, T.Matsui, Y.Kitagawa, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Chemical Physics Letters 483

      Pages: 168-171

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] BS DFT and BS HDFT studies of Cr-Cr sextuple bond from the viewpoint of electron correlation effects2009

    • Author(s)
      Y.Kitagawa, Y.Nakanishi, T.Saito, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3315-3324

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical investigation of the interaction between oxygen molecules and small Au clusters using approximately spin-projected geometry optimization(AP-opt)method2009

    • Author(s)
      M.Okumura, Y.Kitagawa, H.Yabushita, T.Saito, T.Kawakami
    • Journal Title

      Catalysis Today 143

      Pages: 282-285

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on magnetic interactions between Cu(II)ions in salen nucleobases2009

    • Author(s)
      Y.Nakanishi, Y.Kitagawa, Y.Shigeta, T.Saito, T.Matsui, H.Miyachi, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Polyhedron 28

      Pages: 1714-1717

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on magnetic interactions between Cu(II)ions in hydroxypyridone nucleobases2009

    • Author(s)
      Y.Nakanishi, Y.Kitagawa, Y.Shigeta, T.Saito, T.Matsui, H.Miyachi, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Polyhedron 28

      Pages: 1945-1949

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies on electronic structures and magnetic interactions of K_4[Pt_2(pop)_4X]・2H_2O(X=Cl, Br)complexes2009

    • Author(s)
      Y.Kitagawa, M.Ito, Y.Nakanishi, T.Saito, S.Yamada, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Polyhedron 28

      Pages: 1668-1671

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical studies of magnetic interaction between C_<60> anion radicals2009

    • Author(s)
      Y.Kitagawa, Y.Nakanishi, T.Saito, K.Koizumi, M.Shoji, S.Yamada, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Polyhedron 28

      Pages: 1750-1753

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theory of Chemical Bonds in Metalloenzymes XIII. Singlet and Triplet Diradical Mechanisms of Hydroxylations with Iron-Oxo Species and P450 Are Revisited2009

    • Author(s)
      K.Yamaguchi, S.Yamanaka, H.Isobe, M.Shoji, T.Saito, Y.Kitagawa, M.Okumura, J.Shimada
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3723-3744

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extended Hartree-Fock Theory of Chemical Reactions IX.Diradical and perepoxide mechanisms for oxygenations of ethylene with molecular oxygen and iron-oxo species are revisited2009

    • Author(s)
      K.Yamaguchi, S.Yamanaka, J.Shimada, H.Isobe, T.Saito, M.Shoji, Y.Kitagawa, M.Okumura
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3745-3766

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Estimation of effective exchange integral value of polyradical systems based on the band calculation2009

    • Author(s)
      Y.Nakanishi, Y.Kitagawa, T.Saito, Y.Kataoka, T.Matsui, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3632-3640

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Approximately Spin Projected Hessian for Broken Symmetry Method and Stretching Frequencies of F_2 and Singlet O_22009

    • Author(s)
      Y.Kitagawa, T.Saito Y.Nakanishi, Y.Kataoka, T.Matsui, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      International Journal of Quantum Chemistry 109

      Pages: 3641-3648

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spin Contamination Error in Optimized Geometry of Singlet Carbene(^1A_1)by Broken-Symmetry Method2009

    • Author(s)
      Y.Kitagawa, T.Saito, Y.Nakanishi, Y.Kataoka, T.Matsui, T.Kawakami, M.Okumura, K.Yamaguchi
    • Journal Title

      Journal of Physical Chemistry A 113

      Pages: 15041-15046

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Symmetry and Broken-Symmetry in Molecular Orbital Descriptions of Unstable Molecules. 3. The Nature of Chemical Bonds of Spin Frustrated Systems2009

    • Author(s)
      T.Kawakami, R.Takeda, S.Nishihara, T.Saito, M.Shoji, S.Yamada, S.Yamanaka, Y.Kitagawa, M.Okumura, K.Yamaguchi
    • Journal Title

      Journal of Physical Chemistry A 113

      Pages: 15281-15297

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 分子内及び分子間磁気的相互作用に関する理論的研究2011

    • Author(s)
      齋藤徹
    • Organizer
      第5回分子科学討論会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Theoretical study of [2+2] cycloaddition of cyclopentyne and ehtylene : Multireference and broken-symmetry approach2011

    • Author(s)
      齋藤徹
    • Organizer
      ISTCP-VII
    • Place of Presentation
      早稲田大学
    • Year and Date
      2011-09-03
    • Related Report
      2011 Annual Research Report
  • [Presentation] Broken-symmetry natural orbital based Mk-MRCC approach to the binuclear copper (II) compounds2011

    • Author(s)
      齋藤徹
    • Organizer
      ADHOC 2011
    • Place of Presentation
      沖縄県万国津梁館
    • Year and Date
      2011-07-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] 近似スピン射影法を用いた開環反応に関する理論的研究2011

    • Author(s)
      齋藤徹
    • Organizer
      第13回理論化学討論会
    • Place of Presentation
      岡山大学
    • Year and Date
      2011-05-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] AP-UCC and AP-UBD studies on the [3+2] cycloaddition reaction2010

    • Author(s)
      Toru Saito
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Theoretical studies on the electronic structure of the active site of the solublemethane monooxygenase2010

    • Author(s)
      齋藤徹
    • Organizer
      第60回錯体化学討論会
    • Place of Presentation
      大阪国際交流センター
    • Year and Date
      2010-09-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] 近似スピン射影post-UHF法の1,3-双極子付加環化反応への適用2010

    • Author(s)
      齋藤徹
    • Organizer
      第4回分子科学討論会
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-09-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Theoretical studies on the structural and magnetic property of Arginase active site2010

    • Author(s)
      Toru Saito
    • Organizer
      5^<th> International Symposium on Macrocyclic and Supramolecular Chemistry
    • Place of Presentation
      奈良県新公会堂
    • Year and Date
      2010-06-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Theoretical studies on the electronic structure of the active site of the solublemethane monooxygenase2010

    • Author(s)
      Toru Saito
    • Organizer
      5^<th> International Symposium on Macrocyclic and Supramolecular Chemistry
    • Place of Presentation
      奈良県新公会堂
    • Year and Date
      2010-06-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] MkMRCC, APUCC, APUBD calculations of didehydronated species : Comparison among calculated through-bond effective exchange integrals for diradicals2010

    • Author(s)
      Toru Saito
    • Organizer
      Molecular Quantum Mechanics 2010
    • Place of Presentation
      University of California, Berkeley, USA
    • Year and Date
      2010-05-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Theory of Chemical Bonds in Metalloenzymes IV. Local Singlet and Local Triplet Diradical Mechanisms of Hydroxylation of Methane with Methane Monooxygenase and Related Species2010

    • Author(s)
      齋藤徹
    • Organizer
      50^<th> Sanibel Symposium
    • Place of Presentation
      Georgia, USA
    • Year and Date
      2010-02-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] チロシナーゼと基質との結合状態に関する理論的研究2009

    • Author(s)
      齋藤徹
    • Organizer
      第59回 錯体化学討論会
    • Place of Presentation
      長崎大学
    • Year and Date
      2009-09-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] BS計算による遷移状態の計算とその補正2009

    • Author(s)
      齋藤徹
    • Organizer
      第3回 分子科学討論会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2009-09-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Theoretical studies on the effect of p-p stacking on the Cu_2O_2 core in the active site of oxyhemocyanin2009

    • Author(s)
      齋藤徹
    • Organizer
      13^<th> Intern.Conf.on the Applic.of Density Functional Theory in Chemistry and Physics, DFT09
    • Place of Presentation
      Lyon, France
    • Year and Date
      2009-09-01
    • Related Report
      2009 Annual Research Report
  • [Presentation] BS計算によるCH_2のS-Tgapに関する理論的研究2009

    • Author(s)
      齋藤徹
    • Organizer
      第12回 理論化学討論会
    • Place of Presentation
      東京大学
    • Year and Date
      2009-05-29
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2024-03-26  

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