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Phase Transitions in the Higher Order Structure of Giant DNA Single Molecular Chain

Research Project

Project/Area Number 10044073
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field 機能・物性・材料
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

YOSHIKAWA Kenichi  Dept. of Phys., Kyoto University, Professor, 大学院・理学研究科, 教授 (80110823)

Co-Investigator(Kenkyū-buntansha) OANA Hidehiro  Dept. of Phys., KYOTO UNIVERSITY, Assistant, 大学院・理学研究科, 助手 (20314172)
KUMAZAWA Noriyuki  Dep. of Common Chair, Ibaraki University, Associate Professor, 工学部, 助教授 (70137256)
LINDEMAN B.O  ルンド大学, 物理化学科, 教授
KABANOV V.A.  モスクワ大学, 化学学部, 教授
VASILEVSKAYA バレンチナ  ロシア科学アカデミー, ネスメヤノフ有機素子化合物研究所, 上級研究員
KHOKHLOV A.R  ロシア科学アカデミー, ネスメヤノフ有機素子化合物研究所, 教授
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 1999: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1998: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsGiant DNA / Coil-Globule Trancition / Single Chain Observation / Flurescente Microscopy / Single-Chain Folding / Melting Transitions / Surfactant / Folding Transition / コイルーグロビュール転移 / コイル-グロビュール転移 / 単分子観察 / ミセル
Research Abstract

The main purpose of the present research project was to study the folding transitions of long polymer chain, especially of giant DNA molecules. We have found that the conformation of giant DNAs is controlled by the addition of various kinds of surfactant. With the adjustment of alcohol concentrations, both the conformation and solvability are controlled (see e. g.; J. Am. Chem. Soc., 121, 1780-1785, 1999). It has been also found that the melting, or helix-coil transition, and the folding transition exhibit the cross-talk each other. When DNA is folded, melting transition is tendid to be prevented. When melting transition is generated, the unfolding of DNA is accelerated.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Noguchi,H.: "Morphological Variation in a Collapsed Single Homopolymer"J. Chem. Phys.. 109. 5070-5077 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ueda,M.: "Electrophoresis of Long DNA Molecules in Linear Polyacrylamide Solutions"Biophys. Chem.. 71. 113-123 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ichiba,Y.: "Single Chain Observation on Collapse Transition in Giant DNA Induces by Negatively-Charged Polymer"Biochem. Biophys. Res. Commun.. 242. 441-445 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Starodoubsev,S.G.: "Conformational Transition of Long Duplex T4 DNA Embedded in Poly(acrylamide) Gel"Langmuir. 14. 214-217 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Umeno,D.: "Temperature-directed Compaction of Single DNA Molecule Grafted with Poly(N-isopropylacrylamide)"Nucleic Acids Symposium Serise. 39. 175-176 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kidoaki,S.: "Folding and unfolding of a giant duplex-DNA in a mixed solution with polycations, polyanions and crowding neutral polymers"Biophys. Chem.. 109. 133-143 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sergeyev,V.G.: "How Does Alcohol Dissolve the Complex of DNA with Cationic Surfactant?"J. Am. Chem. Soc.. 121. 1780-1785 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takagi,S.: "Stepwise Collapse of Polyelectrolyte Chains Entrapped in a Finite Space As Predicted by Theoretical Consideration"Langmuir. 15. 4143-4146 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshikawa,Y.: "Formation of a Giant Toroid from Long Duplex DNA"Langmuir. 15. 4085-4088 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Murayama,H.: "Thermodynamics of the Collapsing Phase Transition in a Single Duplex DNA Molecule"J. Phys. Chem.. B103. 10517-10523 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Matsuzawa,Y.: "Laser Trapping of an Individual DNA Molecule Folded Using Various Condensing Agents"J. Am. Chem. Soc.. 121. 11581-11582 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Velichko,Yu.S.: "Effect of Twisting on the Behavior of a Double-Stranded Polymer Chain : A Monte Carlo Simulation"J. Chem. Phys.. 111. 9424-9433 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshikawa,Y.: "A Working Hypothesis on the Mechanism of Molecular Machinery"Chem. Phys. Lett.. 303. 10-14 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Nomura,S.: "Giant Phospholiqid Vesicles Entrapping Giant DNA"Giant Vesicles. 313-317 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Noguchi: "Morphological Variation in a Collapsed Single Homopolymer"J. Chem. Phys.. 109. 5070-5077 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Ueda: "Electrophoresis of Long DNA Molecules in Linear Polyacrylamide Solutions"Biophys. Chem.. 71. 113-123 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Ichiba: "Single Chain Observation on Collapse Transition in Giant DNA Induced by Negatively-Charged Polymer"Biochem. Biophys. Res. Commun.. 242. 441-445 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. G. Starodoubtsev: "Conformational Transition of Large Duplex T4 DNA Embedded in Poly (acrylamide) Gel"Langmuir. 14. 214-217 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] D. Umeno: "Temperature-directed Compaction of Single DNA Molecule Grafted with Poly (N-isopropylacrylamide)"Nucleic Acids Symposium Serise. 39. 175-176 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Kidoaki: "Folding and unfolding of a giant duplex-DNA in a mixed solution with polycations, polyanions and crowding neutral polymers"Biophys. Chem.. 109. 133-143 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] V.G.Sergeyev: "How Does Alcohol Dissolve the Complex of DNA with a Cationic Surfactant?"J.Am. Chem. Soc.. 121. 1780-1785 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Takagi: "Stepwise Collapse of Polyelectrolyte Chains Entrapped in a Finite Space As Predicted by Theoretical Consideration"Langmuir. 15. 4143-4146 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y.Yoshikawa: "Formation of a Giant Toroid from Long Duplex DNA"Langmuir. 15. 4085-4088 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H.Murayama: "Thermodynamics of the Collapsing Phase Transition in a Single Duplex DNA Molecule"J.Phys.Chem. B. 103. 10517-10523 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Matsuzawa: "Laser Trapping of an Individual DNA Molecule Folded Using Various Condensing Agents"J.Am. Chem. Soc.. 121. 11581-11582 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yu.S.Velichko: "Effect of Twisting on the Behavior of a Double-Stranded Polymer Chain : A Monte Carlo Simulation"J.Chem. Phys.. 111. 9424-9433 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Tsumoto: "RNA Switches the Higher-Order Structure of DNA Sulfate"Biophys. Chem.. 82. 1-8 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] N.Makita: "ATP/ADP Switches the Higher-Order Structure of DNA In the Presence of Spermidine."FEBS Lett.. 460. 333-337 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] V.G.Sergeyev: "How Does Alcohol Dissolve the Complex of DNA with a Cationic Surfactant?"J. Am. Chem. Soc.. 121. 1780-1785 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Takagi: "Stepwise Collapse of Polyelectrolyte Chains Entrapped in a Finite Space As Predicted by Theoretical Consideration"Langmuir. 15. 4143-4146 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Yoshikawa: "Formation of a Giant Toroid from Long Duplex DNA"Langmuir. 15. 4085-4088 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] H.Murayama: "Thermodynamics of the Collapsing Phase Transition in a Single Duplex DNA Molecule"J. Phys. Chem.. B103. 10517-10523 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Matsuzawa: "Laser Trapping of an Individual DNA Molecule Folded Using Various Condensing Agents"J. Am. Chem. Soc.. 121. 11581-11582 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yu.S.Velichko: "Effect of Twisting on the Behavior of a Double-Stranded Polymer Chain : A Monte Carlo Simulation"J. Chem. Phys.. 111. 9424-9433 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Yoshikawa: "A Working Hypothesis on the Mechanism of Molecular Machinery"Chem. Phys. Lett.. 303. 10-14 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Nomura: "Giant Phospholiqid Vesicles Entrapping Giant DNA"Giant Vesicles. 313-317 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] H.Noguchi: "Morphological Variation in a Collapsed Single Homopolymer" J.Chem.Phys.109. 5070-5077 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Ueda: "Electrophoresis of Long DNA Molecules in Linear Polyacrylamide Solutions" Biophys.Chem.71. 113-123 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Ichiba: "Single Chain Observation on Collapse Transition in Giant DNA Induced by Negatively-Charged Polymer" Biochem.Biophys.Res.Commun.242. 441-445 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.G.Starodoubtsev: "Conformational Transition of Large Duplex T4 DNA Embedded in Polly(acrylamide)Gel" Langmuir. 14. 214-217 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] D.Umeno: "Temperature-directed Compaction of Single DNA Molecule Grafted with Poly(N-isopropylacrylamide)" Nucleic Acids Symposium Serise. 39. 175-176 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Kidaki: "Folding and unfolding of a giant duplex-DNA ina mixed solution with polycations,polyanions and crowding neutral polymers" Biophys.Chem.109. 133-143 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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