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DNA repair enzymes for eukaryotic genetic integrity

Research Project

Project/Area Number 10044087
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionHiroshima University

Principal Investigator

IDE Hiroshi  Hiroshima Univ., Faculty of Science, Professor, 理学部, 教授 (30223126)

Co-Investigator(Kenkyū-buntansha) KUBO Kihei  Osaka Prefect. Univ., College of Agriculture, Professor, 農学部, 教授 (40117619)
TERATO Hiroaki  Hiroshima Univ., Faculty of Science, Research Associate, 理学部, 助手 (00243543)
OHYAMA Yoshihiko  Hiroshima Univ., Faculty of Science, Associate Professor, 理学部, 助教授 (30169081)
MITRA Sankar  テキサス大学, 医学部, 教授
VAN Houten B  テキサス大学, 医学部, 準教授
KOW Yoke W.  エモリー大学, 医学部, 準教授
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 1999: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1998: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsDNA damage / DNA repair / cancer / genetic disease / Endo III / NTH1 / Fpg / OGG1 / Epg / Ogg1 / DAN損傷 / エンドヌクレアーゼ / グリコシラーゼ
Research Abstract

Endonuclease III (Endo III) of Escherichia coli is known to be a DNA repair enzyme with a relatively broad specificity for oxidative pyrimidine lesions. The cDNA of a mouse Endo 111 homologue (mNTH1/mNTHL1) was cloned from a mouse T-cell cDNA library. The cDNA was 1025 nucleotide long and encoded a protein consisting 300 amino acids with a predicted molecular mass of 33.6 kDa. The recombinant mNTH1 protein with a HisィイD26ィエD2 tag was over expressed in a nth nei double mutant of Escherichia coli and purified to apparent homogeneity. The expressed mNTH1 protein released tritium labeled-thymine glycol from DNA, showing an N-glycosylase activity. mNTH1 also recognized thymine glycol, urea residues, and abasic sites specifically introduced into oligonucleotide substrates, generating P-elimination products. Thus, mNTH1 is a bifunctional repair enzyme with N-glycosylase and β-lyase activities.
7, 8-Dihydro-8-oxoguanine (8-oxoG) and 2, 6-diamino-4-hydroxyformamido-pyrimidine (Fapy) are major DNA lesions formed by reactive oxygen species and involved in mutagenic and/or lethal events in cells. Both lesions are repaired by hOGG1 and Fpg in human and Escherichia coli cells, respectively. The repair activities of hOGG1 and Fpg were compared using defined oligonucleotides containing 8-oxoG and a methylated analog of Fapy (me-Fapy) at the same site. The kィイD2catィエD2/KィイD2mィエD2 values of hOGG1 for 8-oxoG and me-Fapy were comparable and this was also the case for Fpg. However the kィイD2catィエD2/KィイD2mィエD2 values of hOGG1 for both lesions were approximately 80-fold lower than those of Fpg. hOGG1 and Fpg showed distinct preferences of the base opposite 8-oxoG, with the activity differences being 19.8 (hOGG1) and 12 (Fpg)-fold between the most and least preferred bases. Such preferences were almost abolished and less than 2-fold for both enzymes when me-Fapy was a substrate, suggesting that, unlike 8-oxoG, me-Fapy is not subjected to paired base-dependent repair.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] Sarker A.H.: "Cloning and characterization of a mouse homologue(mNth11)of Escherichia coli endonuclease III"Journal of Molecular Biology. 282. 761-774 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asaeda A.: "Repair kinetics of abasic sites in mammalian cells selectively monitored by the aldehyde reactive probe(ARP)"Nucleosides Nucleotides. 17. 503-513 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ikeda S.: "Purification and characterization of human NTH1,a homolog of Escherichia coli endonuclease III.Direct identification of Lys-212 as the active residue"Journal of Biological Chemistry. 273. 21585-21593 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ramana C.V.: "Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to free radicals"Proceeding of National Academy of Science U.S.A.. 95. 5061-5066 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fung H.: "Asbestos increases mammalian AP-endonuclease gene expression,protein levels,and enzyme activity in mesothelial cells"Cancer Research. 58. 189-19 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Zou Y.: "Involvement of molecular chaperoning in nucleotide excision repair.Drak leads to increased thermal stability of UvrA,catalytic UvrB loading"Journal of Biological Chemistry. 273. 12887-12892 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Suzuki T.: "Misincorporation of 2'-deoxyoxanosine 5'-triphosphate by DNA polymreases and its implication to mutagenesis"Biochemistry. 37. 11592-11598 (1198)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Suzuki T.: "Isolation and characterization of diazoate intermediate upon nitrou acid and nitric oxide treatment of 2'-deoxycytidine"Biochemistry. 38. 7151-7158 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masaoka,A.: "Enzymatic repair of 5-fomyluracil.I.Excision of 5-formyluracil site-specifically incorporated into oligonucleotide substrates by AlkA protein(Escherichia coli 3-methyladenine DNA glycosylase II)"Journal of Biological Chemistry. 274. 25136-25143 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Terato,H.: "Enzymatic repair of 5-formyluracil.II.Mismatch formation betWeen 5-formyluracil and guanine during DNA replication and its recognition by two proteins involved in base excision repair(AlkA)and mismatch repair (MutS)"Journal of Biological Chemistry. 274. 25144-25150 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asagoshi,K.: "Distinct repair activities of hCGG1 and Fpg for formamidopyrimidine and 7,8-dihydro-8-oxoguanine"Journal of Biological Chemistry. 275. 4956-4964 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asaeda,A.: "Substrate specificity of human methylpurine DNA N-glycosylase"Biochemistry. 39. 1959-1965 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sarker A. H. et al.: "Cloning and characterization of a mouse homologue (mNth11) of Escherichia coli endonuclease III."Journal Molecular Biology. 282. 761-774 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asaeda A. et al.: "Repair kinetics of abasic sites in mammalian cells selectively monitored by the aldehyde reactive Probe (ARP)."Nucleosides Nucleotides. 17. 503-513 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ikeda S, et al.: "Purification and characterization of human NTH1, a homolog of Eseherichia coli endonuclease III. Direct identification of Lys-212 as the active residue."Journal of Biological Chemistry. 273. 21585-21593 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ramana C. V, et al.: "Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to free radicals."Proceeding National Academy of Science U. S. A.. 95. 5061-5066 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fung H. et al.: "Asbestos increases mammalian AP-endonuclease gene expression, protein levels, and enzyme activity in mesothelial cells."Cancer Research. 58. 189-194 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Zou Y. et al.: "Involvement of molecular chaperonins in nucleotide excision repair. Dnak leads to increased thermal sability of UvrA, catalytic UvrB loading."Journal of Biological Chemistry. 273. 12887-12892 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Suzuki T. et al.: "Misincorporation of 2'-deoxyoxanosine 5'-triphosphate by DNA polymreases and its implication to mutagenesis."Biochemistry. 37. 11592-11598 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Suzuki T, et al.: "Isolation and characterization of diazoate intermediate upon nitrou acid and nitric oxide treatment of 2' -deoxycytidine"Biochemistry. 38. 7151-7158 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masaoka. A. et al.: "Enzymatic repair of 5-formyluracil. I. Excision of 5-formyluracil site-specifically incotporated into oligohucleotide substrate by AlkA protein (Escherichia coli 3-methyladenine DNA glycosylase II)."Journal of Biological Chemistry. 274. 25136-25143

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Terato. H. et al.: "Enzymatic repair of 5-formyluracil. H. Mismatch formation between 5-formyluracil and guanine during DNA replication and its recognition by two proteins involved in base excision repair (AlkA) and mismatch repair (MutS)."Journal of Biological Chemistry. 274. 25144-25150

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asagoshi, K. et al.: "Distinct repair activities of hOGG1 and Fpg for formamidopyrimidine and 7, 8-dihydro-8-oxoguanine."Journal of Biologic Chemistry. 275. 4956-4964 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Asaeda A. et al.: "Substrate specificity of human methylpurine DNA N-glycosylase."Biochemistry. 39. 1959-1965 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masaoka,A.: "Enzymatic repair of 5-formyluracil.I.Excision of 5-formyluracil site-specifically incorporated into oligonucleotide substrates by AIKA protein(Escherichia coli 3-methyladenine DNA glycosylase II)."Journal of Biological Chemistry. 274. 25136-25143 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Terato.H.: "Enzymatic repair of 5-formyluracil.II.Mismatch formation between 5-formyluracil and guanine during DNA replication and its recognition by two proteins involved in base excision repair(AIKA)and mismatch repair(MutS)."Journal of Biological Chemistry. 274. 25144-25150 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Theis,K.: "Crystal structure of UvrB,a DNA helicase adapted for nucleotide excision repair."EMBO Journal. 18. 6899-6907 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Asagoshi,K.: "Distinct repair activities of hOGG1 and Fpg for formamidopyrimidine and 7,8-dihydro-8-oxoguanine."Journal of Biological Chemistry. 275. 4956-4964 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Mol,C.D.: "DNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination."Nature. 403. 451-416 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Asaeda,A.: "Substrate specificity of human methylpurine DNA N-glycosylase."Biochemistry. 39(印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sarker A.H.: "Cloning and characterization of a mouse homologue (mNthll) of Escherichia coli endonuclease III." Journal of Molecular Biology. 282. 761-774 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Asaeda A.: "Repair kinetics of abasic sites in mammalian cells selectively monitored by the aldehyde reactive probe (ARP)." Nucleosides Nucleotides. 17. 503-513 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ikeda S.: "Purification and characterization of human NTH1,a homolog of Escherichia coli endonuclease III.Direct identification of Lys-212 as the active residue." Journal of Biological Chemistry. 273. 21585-21593 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ramana C.V.: "Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to free radicals." Proceeding of National Academy of Science U.S.A.95. 5061-5066 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Fung H.: "Asbestos increases mammalian AP-endonuclease gene expression,protein levels,and enzyme activity in mesothelial cells." Cancer Research. 58. 189-194 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Zou Y.: "Involvement of molecular chaperonins in nucleotide excision repair.Dnak leads to increased thermal stability of UvrA,catalytic UvrB loading." Journal of Biological Chemystry. 273. 12887-12892 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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