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Structural elucidation of active ion transport

Research Project

Project/Area Number 10044198
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

TOYOSHIMA Chikashi  Institute of Molecular and Cellular Biosciences, The University of Tokyo, Professor, 分子細胞生物学研究所, 教授 (70172210)

Co-Investigator(Kenkyū-buntansha) NAKASAKO Masayoshi  Institute of Molecular and Cellular Biosciences, The University of Tokyo, Lecturer, 分子細胞生物学研究所, 講師 (30227764)
STOKES David  スカボール分子医学研究所, ニューヨーク大学医学センター細胞生物学教室, 準教授
INESI Giusep  メリーランド大学, 医学部・生化学分子生物学教室, 教授
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥4,700,000 (Direct Cost: ¥4,700,000)
Fiscal Year 1999: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1998: ¥2,600,000 (Direct Cost: ¥2,600,000)
Keywordsactive transport / protein crystal / membrane proteins / ion pump / over expression / electron crystallography / X-ray crystallography / ATPase
Research Abstract

The aim of this project is to elucidate the mechanism of active transport from the structural standpoint. When this project was proposed, we had merely two kinds of crystals of CaィイD12+ィエD1-ATPase useful for electron microscopy. Since then, we succeeded in generating large crystals suitable for X-ray crystallography and expected to solve the structure at an atomic resolution within two years or so. Therefore, we shifted the stress on considering on the utilization of mutants for structural studies and asked Prof. Inesi of the University of Maryland to join, because his group was the only one that-succeeded in making large quantity of this membrane protein. This collaboration went out extremely well and produced one review and one original research paper (submitted to Biochemistry). The mutational studies agreed very well with the structure revealed by x-ray crystallography (submitted to Nature) and provided insights into the conformational changes required for active transport. On the other hand, the structure was indispensable to interpret the biochemical and mutational results correctly. Altogether, this project became a very good example of international collaboration. The next step is obviously to make crystals of mutants. For this purpose, the purification procedure used for SR CaィイD12+ィエD1-ATPase has turned out to be insufficient. We are now improving the methods for cultured cells in collaboration with Prof. Inesi.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (38 results)

All Other

All Publications (38 results)

  • [Publications] C. Toyoshima: "Structure determination of tubular crystals of membrane proteins ,I. Indexngof diffraction patterns"ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yonekura: "Structure determination of tubular crystals of membrane proteins.II. Averaging of tubular crystals of different helical classes."ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yonekura: "Structure determination of tubular crystals of membrane proteins. III. Solvent flattening"ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 小川治夫: "チャネルの立体構造決定法I"脳の科学. 21. 997-1004 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 小川治夫: "チャネルの立体構造決定法II"脳の科学. 21. 1121-1128 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 豊島 近: "イオンチャネル、ポンプの構造と機能"蛋白質・核酸・酵素. 44. 557-565 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 小川治夫: "膜蛋白質の構造解析"ファルマシア. 35. 33-38 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] P. Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8A resolution."Nature. 392. 835-839 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Ogawa: "Structure of the Ca2+ pump of sarcoplasmic reticulum: Aview along the lipid bilayer at 9-A resolution."Biophys. J.. 75. 41-52 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Mayanagi: "Three-dimensional electron microscopy of the photosystem II cor complex."J. Struct. Biol.. 123. 211-224 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 米倉功治: "P型イオンポンプの立体構造"細胞工学. 17. 1270-1271 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Carafoli and Krebs: "Topics in Biological Inorganic Chemistry Vol. 3"Springer. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H.A.C. Benavides and M.J.Yacaman: "Electron Microscopy 1998"Institute of Physics Publishing, Bristol and Philadelphia. (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C. Toyoshima: "Structure determination of tubular crystals of membrane proteins. I. Indexing of diffraction patterns"Ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yonekura: "Structure determination of tubular crystals of membrane proteins. II. Averaging of tubular crystals of different helical classes."Ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yonekura: "Structure determination of tubular crystals of membrane proteins. III. Solvent flattening."Ultramicroscopy. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G. Inesi: "The CaィイD12+ィエD1pump of sarco-and endoplasmic reticulum membranes."In "Topics in Biological Inorganic Chemistry Vol. 3" "Calcium Homeostasis", eds. Carafoli/Krebs. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Ogawa: "Methods for structure determination of channels I."Brain Science. 21 (in Japanese). 997-1004 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Ogawa: "Methods for structure determination of channels II"Brain Science. 21 (in Japanese). 1121-1128 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C. Toyoshima: "Structures and functions of ion channels and pumps."Protein, Nucleic Acid and Enzyme. 44 (in Japanese). 557-565 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Ogawa: "Structural analysis of membrane proteins"Pharmacia. 35 (in Japanese). 33-38 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] P. Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8Å resolution."Nature. 392. 835-839 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Ogawa: "Structure of the CaィイD12+ィエD1 pump of sarcoplasmic reticulum : A view along the lipid bilayer at 9-Å resolution."Biophys. J.. 75. 41-52 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C. Toyoshima: "Electron crystallography of thin protein crystals."In "Electron Microscopy 1998", eds. H. A. C. Benavides and M. J. Yacaman, Institute of Physics Publishing, Bristol and Philadelphia. 395-396 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Mayanagi: "Three-dimensional electron microscopy of the photosystem II core complex."J. Struct. Biol.. 123. 211-224 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yonekura: "Three-dimensional structure of P-type ion pump."Cell Technology. 17 (in Japanese). 1270-1271 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C.Toyoshima: "Structure determination of tubular crystals of membrane proteins.I. Indexing of diffraction patterns."Ultramicroscopy. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Yonekura: "Structure determination of tubular crystals of membrane proteins.II. Averaging of tubular crystals of different helical classes."Ultramicroscopy. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Yonekura: "Structure determination of tubular crystals of membrane proteins.III. Solvent flattening."Ultramicroscopy. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] 小川治夫: "チャネルの立体構造決定法 I"脳の科学. 21. 997-1004 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 小川治夫: "チャネルの立体構造決定法 II"脳の科学. 21. 1121-1128 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 豊島 近: "イオンチャネル、ポンプの構造と機能"蛋白質・核酸・酵素. 44. 557-565 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 小川治夫: "膜蛋白質の構造解析"ファルマシア. 35. 33-38 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Carafoli and Krebs: "Topics in Biological Inorganic Chemistry Vol.3"Springer. (in press)

    • Related Report
      1999 Annual Research Report
  • [Publications] P.Zhang: "Structure of the calcium pump from sarcoplasmic reticulum at 8_<Å >resolution" Nature. 392. 835-839 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] H.Ogawa: "Structure of the Ca^<2+> pump of sarcoplasmic reticulum: A view along the lipid bilayer at 9-_Å resolution" Biophys.J.75. 41-52 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Mayanagi: "Three-dimensional electron microscopy of the photosystem II core complex." J.Struct.Biol.123. 211-224 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 米倉功治: "P型イオンポンプの立体構造" 細胞工学. 17. 1270-1271 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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