• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Interaction of human Spt4 Spt5 with transcription machinery

Research Project

Project/Area Number 10044250
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionTokyo Institute of Technology

Principal Investigator

HANDA Hiroshi  Frontier Collaborative Research Center Tokyo Institute of Technology Professor, フロシティア創造共同研究センター, 教授 (80107432)

Co-Investigator(Kenkyū-buntansha) WADA Tadashi  Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology Assistant Prof., 大学院・生命理工学研究科, 助手 (60262309)
BURATAUSKI S  ハーバード大学, 医学部, 助教授
WINSTON Fred  ハーバード大学, 医学部, 教授
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥5,800,000 (Direct Cost: ¥5,800,000)
Fiscal Year 2000: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1999: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1998: ¥2,600,000 (Direct Cost: ¥2,600,000)
KeywordsRNA Polymerase II / RNA / DSIF / DRB / Spt5 / Spt4 / NELF / P-TEF6 / RNAポリメラーゼII / 転写 / 欠失変異体 / 酵母遺伝学 / 転写装置 / ドミナントネガティブ
Research Abstract

Transcription of protein coding genes is carried out by RNA polymerase II (RNAPII) and the general transcription factors (GTFs) TFIIB, TFIID, TFIIE, TFIIF, and TFIIH (Orphanides et al., 1996). The transcription process can be divided mechanistically into different steps. The binding of the GTFs to a promoter results in the recruitment of RNAPII and the initiation of transcription. This is followed by promoter clearance, elongation, and, finally, transcription termination. Spt4 forms a protein complex with Spt5 to regulate transcription elongation in vivo (Hartzog et al., 1996, 1998). Recently, our biochemical analysis revealed that human cells contain a counterpart to the Spt4/Spt5 complex.
We report that the chromatin-specific transcription elongation factor FACT functions in conjunction with the RNA polymerase II CTD kinase P-TEFb to alleviate transcription inhibition by DSIF (DRB sensitivity-inducing factor) and NELF (negative elongation factor). We find that the kinase activity of TFIIH is dispensable for this activity, demonstrating that TFIIH-mediated CTD phosphorylation is not involved in the regulation of FACT and DSIF/NELF activities. Thus, we propose a novel transcriptional regulatory network in which DSIF/NELF inhibition of transcription is prevented by P-TEFb in cooperation with FACT.This study uncovers a novel role for FACT in the regulation of transcription on naked DNA that is independent of its activities on chromatin templates. In addition, this study reveals functional differences between P-TEFb and TFIIH in the regulation of transcription.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (43 results)

All Other

All Publications (43 results)

  • [Publications] T.Wada,T.Takagi,H.Handa, et al.: "DSIF, a novel negative transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs."Genes Dev.,. 12. 343-356 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] G.A.Hartzog,T.Wada,H.Handa, et al.: "Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae."Genes Dev.,. 12. 357-369 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Wada,T.Takagi,H.Handa, et al.: "Evidence that p-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro."EMBO J.. 17. 7395-7403 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Yamaguchi,T.Wada,H.Handa, et al.: "NELF, a multiple complex containing RD, cooperates with DSIF to repress RNA plymerase II elongation."CELL. 97. 41-51 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Wada,H.Handa, et al.: "FACT relieves DSIF/NELF-mediated inhibition of transcription elongation and reveals functional differences between P-TEFb and TFIIH."Mol.CELL. 5. 1067-1072 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] S.Guo,Y.Yamaguchi,T.Wada,H.Handa, et al.: "A regulator of transcriptional elongation controls vertebrate neuronal development"Nature. 408. 366-369 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Nagata,H.Handa (Eds.): "Real-Time Analysis of Biomolecular Interactions Application of BIACORE"Springer. 256 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 半田宏,石井俊輔,山本雅之,藤井義明 共編: "ゲノムからの情報発現-転写因子とその機能"シュプリンガー・フェアラーク東京. 238 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Wada, T.Takagi, Y.Yamaguchi, A.Ferdous, T.Imai, S.Hirose, S.Sugimoto, K.Yano, G.A.Hartzog, F.Winston, S.Buratowski and H.Handa.: "DSIF, a novel negative transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs."Genes Dev.. 12. 343-356 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] G.A.Hartzog, T.Wada, H.Handa and F.Winston: "Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae."Genes Dev.. 12. 357-369 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Yamaguchi, T.Wada and H.Handa.: "Drawing a new view of DRB : Interplay between positive and negative elongation factors."Genes Cells. 3. 9-15 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] I.Vassias, U.Hazan, Y.michel, C.Sawa, H.Handa, L.Gouya and F.Morinet.: "Regulation of human B19 parvovirus promoter expression by hGABP (E4TF1) transcription factor."J.Biol.Chem.. 273. 8287-8293 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Yamaguchi, T.Wada, F.Suzuki, T.Takagi, J.Hasegawa and H.Handa.: "Casein kinase II interacts with the bZip domains of several transcription factors."Nucleic Acids Res.. 26. 3854-3861 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Wada, T.Takagi, Y.Yamaguchi, D.Watanabe and H.Handa.: "Evidence that p-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro."EMBO J.. 17. 7395-7403 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Yamaguchi, T.Takagi, T.Wada, K.Yano, A.Furuya, S.Sugimoto, J.Hasegawa and H.Handa.: "NELF, a multiple complex containing RD, cooperates with DSIF to repress RNA plymerase II elongation."Cell. 97. 41-51 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Yamaguchi, T.Wada, D.Watanabe, T.Takagi, J.Hasegawa and H.Handa.: "Structure and function of the human transcription elongation factor DSIF."J.Biol.Chem.. 274. 8085-8092 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] N.Azuma, Y.Yamaguchi, H.Handa and N.Azuma.: "Missense mutation in the alternative splice region of the PAX6 gene in eye anomalies."Am.J.Hum.Genet.. 65. 656-663 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] J.A.Kim, Y.Yamaguchi, T.Wada, H.Handa and P.A.Sharp.: "Tat-SF1 Protein associates with RAP30 of TFIIF and hSPT5 Protein."Mol.Cell.Biol.. 19. 5960-5968 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Tsutsui, C.Geltinger, T.Murata, K.Itakura, T.Wada, H.Handa and K.K.Yokoyama.: "The DNA-binding and transcriptional activities of MAZ, a Myc-associated zinc finger protein, are regulated by casein kinase II."Biochem.Biophysic.Res.Commun.. 262. 198-205 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Wada, G.Orphanides, J.Hasegawa, D-K.Kim, D.Shima, Y.Yamaguchi, A.Fukuda, K.Hisatake, S.Oh, D.Reinberg and H.Handa.: "FACT relieves DSIF/NELF-mediated inhibition of transcription elongation and reveals functional differences between P-TEFb and TFIIH."Mol.Cell. 5. 1067-1072 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] S.Guo, Y.Yamaguchi, S.Schilbach, T.Wada, J.Lee, A.Goddard, D.French, H.Handa and A.Rosenthal.: "A regulator of transcriptional elongation controls vertebrate neuronal development."Nature. 408. 366-369 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] M.Takayama,H.Handa, et al.: "Transfer of SV40 temperature-sensitive early gene into human epidermal keratinocytes by the recombinant adenovirus vector"In Vitro Cell.Dev.Biol.. 36. 110-116 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Araki-Sasaki,H.Handa, et al.: "Sabstance P-Induced cadherin expression and its signal transduction in a cloned human corneal epithelial cell line"J.Cell.Physiol.. 182. 371-376 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Wada,Y.Yamaguchi.H.Handa, et al.: "FACT relieves DSIF/NELF-mediated inhibition of transcription elongation and reveals functional differences between P-TEFb and TFIIH"Mol.Cell. 5. 1067-1072 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Shimizu,H.Watanabe,H.Handa, et al.: "High-performance affinity beads for identifying drug receptors"Nature Biotechnology. 18. 877-881 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Guo,Y.Yamaguchi,T.Wada,H.Handa, et al.: "A regulator of transcriptional elongation controls vertebrate neuronal development"Nature. 408. 366-369 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K-I,Ishizu,H.Watanabe,H.Handa,et al.: "Roles of Disulfide Linkage and Calcium Ion-Mediated Interactions in Assembly and Disassembly by Virus-Like Particles Composed of Siman Virus 40 VP1 Capsid Protein"Journal of Virology. 75. 61-72 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Nagata,H.Handa (Eds.): "Real-Time Analysis of Biomolecular Interactions Application of BIACORE"Springer. 256 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 半田宏,石井俊輔,山本雅之,藤井義明 共編: "ゲノムからの情報発現-転写因子とその機能"シュプリンガー・フェアラーク東京. 238 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Yamaguchi et al.: "NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation"Cell. 97. 41-51 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] B.R.Cairns et al.: "Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains"Mol. Cell. 45. 715-723 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] A.M.Dudley,C.Ragelle,& F.Winston.: "The Spt components of SAGA facilitate TBP binding to a promotor at a post-activator-binding step in vivo"Genes Dev.. 13・22. 2940-2945 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] P.B.Kamarutsky,B.Michel & S.Buratowski: "TFIIO-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo"Genes Dev.. 13. 2484-2489 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] C.R.Rodriguez et al.: "Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II"Mol. Cell. Biol.. 20. 104-112 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] J.B.Kim.et.al.: "Tat-SF1 protein associates with Rap30 and hSpt5 proteins"Mol. Cell. Biol.. 19. 5960-5968 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 半田宏 共著: "環境ホルモン汚染対策〜測定・評価から企業対応まで〜"株)エヌ・ティー・エス. 426 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 村松正実 山本雅 編: "実験医学別冊新訂新遺伝子工学ハンドブック 改訂大版"羊土社. 360 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Yamaguchi,T.Takagi,T.Wada 他5名: "NELF,a multisubunit complex containing RD,cooperates with DSIF to rapress RNA polymerase II elongation." Molecular Cell. 印刷中. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Yamaguchi,T.Wada, 他4名: "Structure and function of the human transcription elongation factor DSIF." J.Biol.Chem.印刷中. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Wada,T.Takagi, 他3名: "Evidence that P-TEFb alleriates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro." EMBO J.17巻24号. 7395-7403 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] BR.Cairns, 他4名: "Two actin-related proteins are shared functional compenents of the chromatin-remodeling complexes RSC and SWI/SNF." Mol.Cell. 2巻5号. 639-651 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] B.Michel, 他2名: "Histone-like TAFs are essential for transcription in vivo." Mol.Cell. 2巻. 663-673 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] EJ.Cho,CR.Moore, 他2名: "Allosteric interactions between capping enzyme suburits and the RNA polymerase II C-terminal domain." Genes Dev.12巻. 3482-3487 (1998)

    • Related Report
      1998 Annual Research Report

URL: 

Published: 1998-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi