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Vesicle formation and recycling in the secretory pathway - from yeast to higher plants

Research Project

Project/Area Number 10215210
Research Category

Grant-in-Aid for Scientific Research on Priority Areas (B)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionRIKEN

Principal Investigator

NAKANO Akihiko  RIKEN, Molecular Membrane Biology Lab.,Chief Scientist, 生体膜研究室, 主任研究員 (90142140)

Project Period (FY) 1998 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥116,100,000 (Direct Cost: ¥116,100,000)
Fiscal Year 2001: ¥25,200,000 (Direct Cost: ¥25,200,000)
Fiscal Year 2000: ¥27,000,000 (Direct Cost: ¥27,000,000)
Fiscal Year 1999: ¥32,400,000 (Direct Cost: ¥32,400,000)
Fiscal Year 1998: ¥31,500,000 (Direct Cost: ¥31,500,000)
Keywordsprotein secretion / membrane traffic / ARF1 / RER1 / SEC12 / Ara6 / bulb / gravitropism / SAR1 / RER2 / ARA6 / RMA1 / ARE1 / SAY1 / GFP / ARA4
Research Abstract

Studies on yeast :
1) We analyzed ts alleles of Arf1 GTPase and isolated multicopy suppressors. We suggested that different GEFs and GAPs are involved in an allele-specific manner. 2) We demonstrated that Rer1p is a sorting receptor in the Golgi that retrieves a subset of ER membrane proteins. We also identified the Golgi-localization signals of Rer1p and showed that they interact with COPI components. 3) We identified ER-localization signals of Sec12p and Sec71p. We also crystalized Sec12p and analyzed its 3-D structure. 4) We showed that ergosterol is essential for targeting of the tryptophan permease Tat2p to the plasma membrane. 5) We demonstrated that both Rer2p and its homologue Srt1p have the cis-prenyltransferase activity but show different characteristics.
Studies on plants :
1) We introduced dominant negative mutants of AtARF1 into plant cells and showed that its expression inhibits ER-Golgi traffic. 2) We identified Ara6 and Ara7 as new members of the Rab GTPase family and showed that they function in endosomes. We showed that Ara6 has uniques features distinct from other conventional Rab GTPases. 3) We showed that Arabidopsis RMA1, originally isolated as a suppressor of the yeast sec15 mutant, encodes a novel membrane-bound ubiquitin ligase. 4) We showed that vacuole membranes of Arabidopsis plants as visualized by γTIP-GFP display very dynamic and complex structures. 5) We demonstrated from the analysis of Arabidopsis shoot gravitropism mutants that vacuole biogenesis plays very important roles in the sensing of the gravity.

Report

(5 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (56 results)

All Other

All Publications (56 results)

  • [Publications] Sato, K.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer"J. Cell Biol.. 152. 935-944 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Matsuda, N.: "Rma1, a novel type of RING-finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase"J. Cell Sci.. 114. 1949-1957 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Dumon-Seignovert, L.: "Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Sec12D protein, a guanine nucleotide exchange factor involved in vesicle transport"Acta Cryst. D.. 57. 893-895 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, M.: "Yeast Saccharomyces cerevisiae has two cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis"Genes to Cells. 6. 495-506 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umebayashi, K.: "Activation of the Ras-cAMP signal transduction pathway inhibits the proteasome-independent degradation of misfolded protein aggregates in the ER lumen"J. Biol. Chem.. 276. 41444-41454 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueda, T.: "Ara6, a plant-unique novel-type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana"EMBO J.. 20. 4730-4741 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Morita, M.T.: "Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis"Plant Cell. 14. 47-56 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Saito, C.: "A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis"Plant J.. 29. 245-255 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K.: "Emp47p and its close homologue Emp46p have a tyrosine-containing ER exit signal and function in glycoprotein secretion in Saccharomyces cerevisiae"Mol. Biol. Cell. 13. 2518-2532 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takeuchi, M.: "Arf1 GTPase plays roles in the protein traffic between the endoplasmic reticulum and the Golgi apparatus in tobacco and Arabidopsis cultured cells"Plant J.. 31. 499-515 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Geldner, N.: "The Arabidopis ARF-GEF GNOM recycles PIN1 through endosomes and mediates auxin transport and auxin-dependent plant growth"Cell. 112. 219-230 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K.: "Oligomerization of a cargo transport receptor directs protein sorting into COPII-coated transport vesicles"Mol. Biol. Cell. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K.: "Distinct transmembrane determinants for Rer1p-dependent ER localization and multivesicular body sorting"Mol. Biol. Cell. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umebayashi, K.: "Ergosterol synthesis is required for targeting of tryptophan permease to the yeast cell surface"J. Cell Biol.. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K. et al.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer"J. Cell Biol.. 152. 935-944 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Matsuda, N. et al.: "Rma1, a novel type of RING-finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase"J. Cell Sci.. 114. 1949-1957 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Dumon-Seignovert, L. et al.: "Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Secl2D protein, a guanine nucleotide exchange factor involved in vesicle transport"Acta Cryst. D.. 57. 893-895 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, M. et al.: "Yeast Saccharomyces cerevisiae has two cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis"Geme to Cells. 6. 495-506 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umebayashi, K. et al.: "Activation of the Ras-cAMP signal transduction pathway inhibits the proteasome-independent degradation of misfolded protein aggregates in the ER lumen"J Biol. Chem.. 276. 41444-41454 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ueda, T. et al.: "Ara6, a plant-unique novel-type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana"EMBL J.. 20. 4730-4741 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Morita, M.T. et al.: "Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis"Plant Cell. 14. 47-56 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Saito, C. et al.: "A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis"Plant J.. 29. 245-255 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K., and Nakano, A.: "Emp47p and its close homologue Emp46p have a tyrosine-containing ER exit signal and function in glycoprotein secretion in Saccharomyces cerevisiae"Mol. Biol. Cell. 13. 2518-2532 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takeuchi, M. et al.: "Arf1 GTPase plays roles in the protein traffic between the endoplasmic reticulum and the Golgi apparatus in tobacco and Arabidopsis cultured cells"Plant J.. 31. 499-515 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Geldner, N. et al.: "The Arabidopis ARF-GEF GNOM recycles PIN1 through endosomes and mediates auxin transport and auxin-dependent plant growth"Cell. 112. 219-230 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K., and Nakano, A.: "Oligomerization of a cargo transport receptor directs protein sorting into COPII-coated transport vesicles"Mol Biol. Cell. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K. et al.: "Distinct transmembrane determinants for Rer1p-dependent ER localization and multivesicular body sorting"Mol Biol. Cell. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Umebayashi, K., and Nakano, A.: "Ergosterol synthesis is required for targeting of tryptophan permease to the yeast cell surface"J. Cell Biol.. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sato, K.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer"J. Cell Biol.. 152. 935-944 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Matsuda, N.: "Rmal, a novel type of RING-finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase"J. Cell Sci.. 114. 1949-1957 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Dumon-Seignovert, L.: "Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Sec12D protein, a guanine nucleotide exchange factor involved in vesicle transport"J. Acta Cryst. D.. 57. 893-895 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Sato, M.: "Yeast Saccharomyces cerevisiae has two cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis"Genes to Cells. 6. 495-506 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Umebayashi, K.: "Activation of the Ras-cAMP signal transduction pathway inhibits the proteasome-independent degradation of misfolded protein aggregates in the ER lumen"J. Biol. Chem.. 276. 41444-41454 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ueda, T.: "Ara6, a plant-unique novel-type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana"EMBO J.. 20. 4730-4741 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Morita, M. T.: "Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis"Plant Cell. 14. 47-56 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Saito, C.: "A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis"Plant J.. 29(印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Matsuda,N.: "Overexpressioin of PLA2, a Rab/Ypt-family small GTPase from pea Pisum sativum, aggravates the growth defect of yeast ypt mutants."Cell Struct.Funct.. 25. 11-20 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ueda,T.: "Modes of interaction between the Arabidopsis Rab protein, Ara4, and its putative regulator molecules revealed by a yeast expression system."Plant J.. 21. 341-349 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Homma,K.: "Evidence for recycling of cytochrome P450 sterol 14-demethylase from the cis-Golgi compartment to the endoplasmic reticulum (ER) upon saturation of the ER-retention mechanism."J.Biochem.. 127. 747-754 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Takeuchi,M.: "A dominant negative mutant of Sar1 GTPase inhibits protein transport from the endoplasmic reticulum to the Golgi apparatus in tobacco and Arabidopsis cultured cells."Plant J.. 23. 517-525 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Saito-Nakano,Y.: "Sed4p functions as a positive regulator of Sar1p probably through inhibition of the GTPase activation by Sec23p."Genes to Cells. 5. 1039-1048 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yahara,N.: "Multiple roles of Arf1 GTPase in the yeast exocytic and endocytic pathways."Mol.Biol.Cell. 12. 221-238 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sato,K.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer."J.Cell Biol.. (印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sato, K.: "The Arabidopsis thaliana RER1 gene family : its potential role in the endoplasmic reticulum localization of membrane proteins"Plant Mol. Biol.. 41. 815-824 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Matsuda, N.: "Overexpressioin of PRA2, a Rab/Ypt-family small GTPase from Pea Pisum sativum, aggravates the growth defect of yeast ypt mutants"Cell Struct. Funct.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ueda, T.: "Modes of interaction between the Arabidopsis Rab protein, Ara4, and its putative regulator molecules revealed by a yeast expression system"Plant J.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Homma, K.: "Evidence for recycling of cytochrome P450 sterol 14-demethylase from the cis-Golgi compartment to the endoplasmic reticulum(ER)upon saturation of the ER-retention mechanism"J. Biochem.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hopkins, B. D.: "Methods in Enzymology"Academic Press (印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Matsuda, N.: "RMA1, an Arabidopsis thajiara gene whose cDNA suppresses the yeast sec15 mutation, encodes a novel protein with a RING finger motif and a membrane onther" Plant Cell Physiol.39. 545-554 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Takeuchi, M.: "Isolation of a tobacco cDNA encoding Sar1 GTP acl and analysis of its domirant mutationg in vesicnlar traffic using a yeast complementation system" Plant Cell Physiol.39. 590-599 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Saito, Y.: "Adivities of mutant Sar1 proteins in guanine nuccleotide binding, GTR hydrolysis and cell-free tranport from thc endoplasmic retiuluin to the Gdgi apparlus." J.Biochem.124. 816-823 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nakamura, N.: "Identification of potential regulatory elements for the transport of Emp 24p." Mol.Biol.Cell. 9. 3493-3503 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sato, M.: "The yeast RER2 gene, identified by endopl asmic reticulum protein localization mutations, sncedes, cis-prenyltran ferase, a key enzyme in the delichof synlkesis" Mol.Cell Biol.19. 471-483 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Saito, Y.: "Identification of SEC12, SED14, muncded SEC16 and EKS1/HRD3 as multicopy suppressors of ts mudants of Sas1 GTPasc" J.Biochem.125. 130-137 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Murakami, A.: "The inactiveform of a yeast casainkinase I suppresses the saeretory detect of the Ses12 mutnat:Implication of negative regulation by the Hov25 kinase in the vode budding from the cnlaplcmc sction" J.Biol.Chem.274. 3804-3810 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kato, J.: "E.cd:homologue of yeast Rer2, a key enzymcot dolichol synthesis, is essential for the carriey lipif formation in bacterial cell wall synthesis" J.Bacteriol.(印刷中). (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2018-03-28  

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