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Mechanism of rejoining of double-strand breaks in DNA in mammalian cells

Research Project

Project/Area Number 10216206
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

TACHIBANA Akira  Kyoto University, Radiation Biology Center, Associate Professor, 放射線生物研究センター, 助教授 (20188262)

Co-Investigator(Kenkyū-buntansha) EJIMA Yosuke  Kyoto University, Radiation Biology Center, Associate Professor, 放射線生物研究センター, 助教授 (50127057)
SASAKI Masao  Kyoto University, Radiation Biology Center, Professor, 放射線生物研究センター, 教授 (20013857)
TODO Takeshi  Kyoto University, Radiation Biology Center, Professor, 放射線生物研究センター, 教授 (90163948)
Project Period (FY) 1998 – 2002
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥31,100,000 (Direct Cost: ¥31,100,000)
Fiscal Year 2002: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 2001: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 2000: ¥6,200,000 (Direct Cost: ¥6,200,000)
Fiscal Year 1999: ¥6,600,000 (Direct Cost: ¥6,600,000)
Fiscal Year 1998: ¥9,500,000 (Direct Cost: ¥9,500,000)
KeywordsDNA rejoining / Bloom syndrome / DNA double-strand breaks / chromosome instability / RecQ hellcase / radiation damage / ataxia-telangiectasia / deletion mutation / 放射線適応応答 / p53 / 染色体異常 / 細胞内情報伝達系 / 非相同的組換え / DNA2本鎖切断修復 / 高発癌性劣性遺伝病 / p53遺伝子 / 相同的組換え
Research Abstract

Repair of DSBs is important to prevent chromosomal fragmentation, translocations and deletions. To investigate the process of NHEJ, we have established an in vitro system to clarify the measurement and analysis of the efficiency and the fidelity of rejoining of DSBs, and applied the method to investigate NHEJ in human cells derived from patients suffering from cancer-prone hereditary diseases. The efficiency of rejoining in the nuclear extract from an ataxia-telangiectasia (A-T) cell line was comparable to that from a control cell line. However, the accuracy of rejoining was much lower for the A-T cell extract than for the control cell extract. All mutations were deletions, most of which contained short direct repeats at the breakpoint junctions. The deletion spectrum caused by the A-T nuclear extract was distinct from that by the control extract. These results indicate that A-T cells have certain deficiencies in end-joining of double-strand breaks in DNA. The extract from Bloom syndro … More me cells also showed the similar activity and the lower fidelity of rejoing compared to that from normal cells. From the sequencing analysis of the junction o. DSBs, it is speculated that the defect in the BLM helicase might cause irregular rejoining of DSBs. Radioadaptive response is the acquirement of cellular resistance to ionizing radiation by prior exposure to low dose. We investigated the in vitro end-joining activity of DNA ends in radioadaptive cells. Both the efficiency and the fidelity of rejoining in the cells pre-exposed to low dose are increased comparing to those without pre-exposure. We also found that in p53-deficient cells, pre-irradiation caused no apparent alteration in both the efficiency and fidelity of end-joining. These results suggest that the exposure to low dose activates a cellular function to repair DSBs efficiently, which is dependent on p53. These results indicate that NHEJ pathway is regulated by many factors ; genetic regulation by ATM and BLM, and physiological conditions such as irradiation with ionizing radiation. The observations also suggest that in some occasions p53 might play a key role in NHEJ. Less

Report

(6 results)
  • 2003 Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Naka, K., Tachibana, A., Ikeda, K., Motoyama, N.: "Stress induced premature senescence in hTERT-expressing ataxia telangiectasia fibroblasts."Journal of Biological Chemistry. 279. 2030-2037 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tachibana, A., Sasaki, M.S.: "Characteristics of the end-joining of DNA double-strand breaks by the ataxia-telangiectasia nuclear extract"Biochemical and Biophysical Research Communications. 297. 275-281 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sasaki, M.S, Ejima, Y., Tachibana, A., Yamada, T., Ishizaki, K., Shimizu, T., Nomura, T.: "DNA damage response pathway in radioadaptive response."Mutation Research. 504. 101-118 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tachibana, A., Tatsumi, K, Furuno-Fukushi, I., Sasaki, M.S.: "High frequency of deletions at the hypoxanthine-guanine phosphoribosyltransferase locus in an ataxia-telangiectasia lymphoblastoid cell line irradiated with γ-rays"Japanese Journal of Cancer Research. 92. 1190-1196 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sonoda, E., Sasaki, M.S., Morrison, C., Yamaguchi-Iwai, Y., Takeda, M., Takeda, S.: "Sister chromatid exchanges are mediated by homologous recombination in vertebrate cells."Molecular and Cellular Biology. 19. 5166-5169 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takata, M., Sasaki, M.S., Sonoda, E., Morrison, C., Hashimoto, M., Utsumi, H., Yamaguchi-Iwai, Y., Shinohara, A., Takeda, S.: "Homologous recombination and non-homologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integlity in vertebrate cells."EMBO Journal. 17. 5497-5508 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Naka, K., Tachibana, A., Ikeda, K., Motoyama, N.: "Stress induced premature senescence in hTERT-expressing ataxia telangiectasia fibroblasts."Journal of Biological Chemistry. Vol.279, No.3. 2030-2037 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Koga, A., Iida, A., Kamiya, M., Hayashi, R., Hori, H., Ishikawa, Y., Tachibana, A.: "The medaka fish To12 transposable element can undergo excision in human and mouse cells."Journal of Human Genetics. Vol.48, No.5. 231-235 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tachibana, A., Sasaki, M.S.: "Characteristics of the end-joining of DNA double-strand breaks by the ataxia-telangiectasia nuclear extract."Biochemical and Biophysical Research Communications. Vol.297, No.2. 275-281 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sasaki, M.S., Ejima, Y., tachibana, A., Yamada, T., Ishizaki, K., Shimizu, T., Nomura, T.: "DNA damage response pathway in radioadaptive response."Mutation Research. Vol.504, No.1. 101-118 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tachibana, A., Tatsumi, K., Furuno-Fukushi, I., Sasaki, M.S.: "High frequency of deletions at the hypoxanthine-guanine phosphoribosyltransferase locus in an ataxia-telangiectasia lymphoblastoid cell line irradiated with γ-rays."Japanese Journal of Cancer Research. Vol.92, No.11. 1190-1196 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sonoda, E., Sasaki, M.S., Morrison, C., Yamaguchi-Iwai, Y., Takata, M., takeda, S.: "Sister chromatid exchanges are mediated by homologous recombination in vertebrate cells."Molecular and Cellular Biology. Vol.19, No.7. 5166-5169 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takata, M., Sasaki, M.S., Sonoda, E., Morrison, C., Hashimoto, M., Utsumi, H., Yamaguchi-Iwai, Y., Shinohara, A., Takeda, S.: "Homologous recombination and non-homologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells."EMBO Journal. Vol.17, No.18. 5497-5508 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tachibana A., Sasaki, M.S.: "Characteristics of the end-joining of DNA double-strand breaks by the ataxia-telangiectasia nuclear extract"Biochemical and Biophysical Research Communications. 297(2). 275-281 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Takahashi, A., Asakawa, I., Yuki, K., Matsumoto, T., Kumamoto, M., Kondo, N., Ohnishi, K., Tachibana, A., Ohnishi, T.: "Radiation-induced apoptosis in the scid mouse spleen after low dose-rate irradiation"International Journal of Radiation Biology. 78(8). 689-693 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sasaki, M.S., Ejima, Y., Tachibana, A., Yamada, T., Ishizaki, K., Shimizu, T., Nomura, T.: "DNA damage response pathway in radioadaptive response"Mutation Research. 504(1). 101-118 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Koga, A., Iida, A., Kamiya, M., Hayashi, R., Hori, H., Ishikawa, Y., Tachibana, A.: "The medaka fish Tol2 transposable element can undergo excision in human and mouse cells"Journal of Human Genetics. (印刷中).

    • Related Report
      2002 Annual Research Report
  • [Publications] Tachibana, A., Tatsumi, K., Furuno-Fukushi, I., Sasaki, M.S.: "High frequency of deletions at the hypoxanthine-guanine phosphoribosyltransferase locus in an ataxia-telangiectasia lymphoblastoid cell line irradiated with γ-rays"Japanese Journal of Cancer Research. 92(11). 1190-1196 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takahashi, A., Ohnishi, K., Asakawa, I., Kondo, N., Nakagawa, H., Yonezawa, M., Tachibana, A., Matsumoto, H., Ohnishi, T.: "Radiation response of apoptosis in C57BL/6N mouse spleen after whole-body irradiation"International Journal of Radiation Biology. 77(9). 939-945 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yamada,T.,Tachibana,A.,Shimizu,T.,Mugishima.H.,Okubo.M.,and Sasaki,M.S.: "Novel mutations of the FANCG gene causing alternative splicing in Japanese Fanconi anemia."Journal of Human Genetics. 45巻2号. 159-166 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Takabashi,A.,Ohnishi.K.,Tsuji,K.,Matsumoto.H.,Aoki,H.,Wang.X.,Tamamoto,T.,Yukawa.O.,Furusawa,Y.,Ejima,Y.,Tachibana,A.,and Obnishi,T.: "WAF1 accumulation by carbon-ion beam and α-particle irradiation in human glioblastoma cultured cells."International Journal of Radiation Biology. 76巻3号. 335-341 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Shimizu, T.: "Coordinated regulation of radioadaptive response by protein kinase C and p38 mitogen-activated protein kinase"Experimental Cell Research. 251巻2号. 424-432 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kaneko, Y.: "Cell cycle-dependent and ATM-independent expression of human Chk1 kinase"Oncogene. 18巻25号. 3673-3681 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tachibana, A.: "The FANCA gene in Japanese Fanconi anemia : Reports of eight novel mutations and analysis of sequence variability"Human Mutations. 13巻3号. 237-244 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamada, T.: "Novel mutations of the FANCG gene causing alternative splicing in Japanese Fanconi anemia"Journal of Human Genetics. 45巻(印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takahashi, A.: "WAF1 accumulation by carbon-ion beams and α-particle irradiation in human glioblastoma cultured cells"International Journal of Radiation Biology. (印刷中).

    • Related Report
      1999 Annual Research Report
  • [Publications] A.Tachibana: "The FANCA gene in Japanese Famoni anemia: Reports of eight novel mutations and analysis of sequence variability" Human Mutation. 13巻3号. 237-244 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Kato: "Specificity of mutations in the PMS2-deficient human tumor cell like HEC-1R" Mutation Research. 422巻2号. 279-283 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2018-03-28  

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