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In situ study of protein crystallization at the molecular level using atomic force microscopy

Research Project

Project/Area Number 10304023
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 固体物性Ⅰ(光物性・半導体・誘電体)
Research InstitutionTOHOKU UNIVERSITY

Principal Investigator

DARBIN Stephen d.  Inst for Materials Research, Tohoku University, Assoc. Prof., 金属材料研究所, 助教授 (10301045)

Co-Investigator(Kenkyū-buntansha) SAZAKI Gen  Inst for Materials Research, Tohoku University, Research Assoc., 金属材料研究所, 助手 (60261509)
MIYASHITA Satoru  Inst for Materials Research, Tohoku University, Research Assoc., 金属材料研究所, 助手 (00219776)
吉川 彰  東北大学, 金属材料研究所, 助手 (50292264)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥27,000,000 (Direct Cost: ¥27,000,000)
Fiscal Year 1999: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1998: ¥24,500,000 (Direct Cost: ¥24,500,000)
Keywordsprotein / atomic force microscope / crystal growth / タンパク質結晶
Research Abstract

The goal of this work has been to extend the investigation of protein crystallization mechanisms to the level of individual molecules. Within this area, the research followed several directions : 1) use of atomic force microscopy (AFM) to follow the kinetics of protein crystal growth in situ, relating the observable parameters such as step velocity to molecular scale quantities such as bond energies ; 2) development of a modification of the conventional AFM technique to directly monitor single-molecule events during crystal growth, such as surface diffusion and incorporation ; 3) use of optical techniques to monitor properties which might be related to molecular level phenomena, such as alignment effects due to extremely high magnetic field, or changes in molecular hydration under high pressure. In addition, other research on crystal growth was carried out using the AFM and therefore considered to be indirectly supported. Regarding 1), AFM observation was used to elucidate the mechanis … More m of impurity action in inhibiting crystal growth of tetragonal form lysozyme, which can be understood in terms of a step-blocking model. AFM was also used to investigate the kinetics of step motion on monoclinic lysozyme crystals, which could be related to the intermolecular "macrobonds" which determined the morphology of the crystal. In connection with 2), we developed a modified commercial atomic force microscope combined with a high-speed data acquisition system to pursue more direct single-molecule measurements. The AFM, operated in tapping mode without scanning, gave a signal representing sample height changes due to motion of the topmost protein molecule under the tip. A much improved signal-to-noise ratio can be obtained by using very small cantilevers ; with these, the system should be capable of the ultimate goal of single-molecule observation. As for area 3), fluorescence microscopy observations were used to demonstrate the role of molecular charge and crystal growth rate on impurity incorporation, and polarization rotation and in situ optical microscopy were used to study magnetic field effects, which could be understood via the observed reduction of solution convection, but had at most small influence on molecular-scale parameters such as alignment. Meanwhile, understanding of the action of ever-present impurities and means of optimizing crystal morphology through solution conditions and external fields have already enabled the production of higher quality crystals for structure determination at higher resolution Less

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report

Research Products

(37 results)

All Other

All Publications (37 results)

  • [Publications] K.Kurihara et al.: "Incorporation of impurity to a tetragonal lysozyme crystal"J.Crystal Growth. 196. 285-290 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Yanagiya et al.: "Effect of a magnetic field on the orientation of hen egg-white lysozyme crystals"J.Crystal Growth. 196. 319-324 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.Nakada et al.: "Direct AFM observations of impurity effects on a lysozyme crystal"J.Crystal Growth. 196. 503-510 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G.Sazaki et al.: "Solubility of tetragonal and orthorhombic lysozyme crystals under high pressure"J.Crystal Growth. 196. 204-209 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Yanagiya et al.: "Effects of a magnetic field on the growth rate of tetragonal lysozyme crystals"J.Crystal Growth. 196. 319-324 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G.Sazaki et al.: "Effects of a magnetic field on protein crystallization"Surface Science(Japanese). 20. 770-776 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G.Sazaki et al.: "Magnetic damping of the temperature-driven convection in NaCl aqueous solution using a static and homogeneous field of 10T"Jpn.J.Appl.Phys.. 38. L842-L844 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A.Yoshikawa et al.: "Microstructures in oxide eutectic fibers grown by a modified micro-pulling-down method"J.Crystal Growth. 205. 305-316 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Hasegawa et al.: "Microstructure and high temperature mechanical properties of sapphire/R-Al-O(R=Y,Gd,Er,Ho,Dy)eutectic fibers grown by the micro pulling-down method"J.Korean Assoc.Cryst.Growth. 9. 432-436 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.M.Ko et al.: "Non-isomorphic ErF3 layers on Si(111)substrates grown by molecular beam epotaxy"J.Vac.Sci.Tech A. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.M.Ko et al.: "Surface characterization of NdF3 layers on Si(111)substrates grown by molecular beam epotaxy"J.Crystal Growth. (in press). (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.D.Durbin et al.: "in Nanophase and Nanocomposite Materials III"Materials Research Society(in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Kurihara, S. Miyashita, G. Sazaki, T. Nakada, S.D. Durbin, H. Komatsu, T. Ohba, and K. Ohki: "Incorporation of impurity to a tetragonal lysozyme crystal"J. Crystal Growth. 196. 285-290 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G. Sazaki, E. Nagatoshi, Y. Suzuki, S.D. Durbin, S. Miyashita, T. Nakada and H. Komatsu: "Solubility of tetragonal and orthorhombic lysozyme crystals under high pressure"J. Crystal Growth. 196. 204-209 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Yanagiya, G. Sazaki, S.D. Durbin, S. Miyashita, T. Nakada, H. Komatus, K. Watanab, and M. Motokawa: "Effect of a magnetic field on the orientation of hen egg-white lysozyme crystals"J. Crystal Growth. 196. 319-324 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T, Nakada, G. Sazaki, S. Miyashita, S.D. Durbin and H. Komatsu: "Direct AFM observations of impurity effects on a lysozyme crystal"J. Crystal Growth. 196. 503-510 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Yanagiya, G. Sazaki, S.D. Durbin, S. Miyashita, K. Nakajima, H. Komatsu, K. Watanabe and M. Motokawa: "Effects of a magnetic field on the growth rate of tetragonal lysozyme crystals"J. Crystal Growth. 208. 645-650 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G. Sazaki, S. Yanagiya, S.D. Durbine, S. Miyashita, T. Nakada, H. Komatus, K. Nakajima and M. Motokawa: "Effects of a magnetic field on protein crystallization"Surface Science (Japanese). 20. 770-776 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] G. Sazaki, S.D. Durbin, S. Miyashita, T. Ujihara, K. Nakajima, M. Motokawa: "Magnetic damping of the temperature-driven convection in NaCl aqueous solution using a static and homogeneous field of 10T"Jpn. J. Appl. Phys.. 38. L842-L844 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Yoshikawa, B.M. Epelbaum, K. Hasegawa, S.D. Durbin, and T. Fukuda: "Microstructures in oxide eutectic fibers grown by a modified micro pulling-down method"J. Crystal Growth. 205. 305-316 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Hasegawa, A. Yoshikawa, S.D. Surbine, B.M. Epelbaum, T. Fukuda and Y. Waku: "Microstructure and high temperature mechanical properties of sapphire/R-Al-O (R=Y, Gd, Er, Ho, Dy) eutectic fibers grown by the micro pulling-down method"J, Korean Assoc. Cryst. Trowth. 9. 432-436 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.M. Ko, S.D. Durbin, T. Fukuda and K. Inaba: "Non-isomorphic ErFィイD23ィエD2 layers on Si(111) substrates grown by molecular beam epitaxy"J. Vac. Sci. Tech A. in press. (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.M. Ko, S.D. Durbin, T. Fukuda and K. Inaba: "Surface characterization of NDFィイD23ィエD2 layers on Si(111) substrates grown by molecular beam epitaxy"J. Crystal Growth. in press. (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.D. Darbin A. Yoshikawa, K. Hasegawa, J.-H. Lee, B.M. Epelbaum, T. Fukuda and Y. Waku: "Microstructure and mechanical properties of oxide eutectic fibers"in Nanophase and Nanocomposite Materials III, ed. S. Komarneni et al (Mater. Res. Soc.). in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Kurihara et al.: "Incorporation of impurity to a tetragonal lysozyme crystal"J. Crystal Growth. 196. 285-290 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Yanagiya et al.: "Effect of a magnetic field on the orientation of hen egg-white lysozyme crystals"J. Crystal Growth. 196. 319-324 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Nakada et al.: "Direct AFM observations of impurity effects on a lysozyme crystal"J. Crystal Growth. 196. 503-510 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] G.Sazaki et al.: "Solubility of tetragonal and orthorhombic lysozyme crystals under high pressure"J. Crystal Growth. 196. 204-209 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Yanagiya et al.: "Effects of a magnetic field on the growth rate of tetragonal lysozyme crystals"J.Crystal Growth. 196. 319-324 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] G.Sazaki et al.: "Effects of a magnetic field on protein crystallization"Surface Science (Japanese). 20. 770-776 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] G.Sazaki et al.: "Magnetic damping of the temperature-driven convection in NaCl aqueous solution using a static and homogeneous field of 10T"Jpn. J. Appl. Phys.. 38. L842-L844 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] A.Yoshikawa et al.: "Microstructures in oxide eutectic fibers grown by a modified micro pulling-down method"J. Crystal Growth. 205. 305-316 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Hasegawa et al.: "Microstructure and high temperature mechanical properties of sapphire/R-Al-O (R=Y, Gd, Er, Ho, Dy) eutectic fibers grown by the micro pulling-down method"J. Korean Assoc. Cryst. Growth. 9. 432-436 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] J.M.Ko et al.: "Non-isomorphic ErF3 layers on Si (111) substrates grown by molecular beam epotaxy"J. Vac. Sci. Tech A.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] J.M.Ko et al.: "Surface characterization of NdF3 layers on Si (111) substrates grown by molecular beam epotaxy"J. Crystal Growth. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.D.Durbin et al.: "Microstructure and mechanical properties of oxide eutectic fibers"Mater. Res. Soc. Proc.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Nakada: "Direct AFM observations of impurity effects on a lysozyme crystal" J.Crystal Growth. 196. 503-510 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-03-31   Modified: 2020-05-15  

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