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Study on the sequence and determination of the allelic variants at the D1S80 locus

Research Project

Project/Area Number 10307011
Research Category

Grant-in-Aid for Scientific Research (A).

Allocation TypeSingle-year Grants
Section一般
Research Field Legal medicine
Research InstitutionShinshu University

Principal Investigator

FUKUSHIMA Hirofumi  Shinshu Univ. Sch.Med. Professor, 医学部, 教授 (70135218)

Co-Investigator(Kenkyū-buntansha) ASAMURA Hideki  Shinshu Univ. Sch.Med. assistant, 医学部, 助手 (80324250)
TAKAYANAGI Kayoko  Shinshu Univ. Sch.Med. assistant, 医学部, 助手 (60313847)
OTA Masao  Shinshu Univ. Sch.Med. lecturer, 医学部, 講師 (50115333)
劉 春燕  信州大学, 医学部, 助手 (80303460)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥18,700,000 (Direct Cost: ¥18,700,000)
Fiscal Year 2000: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 1999: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 1998: ¥10,500,000 (Direct Cost: ¥10,500,000)
KeywordsPCR / subtyping / paternity testing / polymorphism / DNA / D1S80 / sequence / variants / DIS80 / 蛍光色素 / 多型 / DNA / 塩基配列
Research Abstract

Through analyzing the alleles in Japanese and Chinese populations, we established a new nomenclature for the PCR-RFLP band patterns, closely relating them to their corresponding sequences so that the new types could be designated easily and accurately. The short fragments of 16 bp, 32 bp, 48 bp, 64 bp, and 80 bp contained 1,2,3,4, and 5 repeat units, respectively, and were thus named bands "1", "2", "3", "4", and "5". Excluding a flanking region, the eight kinds of long fragments of 221 bp, 237 bp, 253 bp, 269 bp, 285bp, 317 bp, 349bp, and 365 bp in length each contained 6,7,8,9,10,12,14, and 15 repeat units.
To testify whether alleles of the same length and of the same band pattern possessed the same sequences, a number of alleles were sequenced in addition to the above-sequenced samples. Of the sequenced samples which had the same lengths and the same band patterns, most shared the same sequences. However, some revealed different sequences. Because of the differences in the repeat arrays between the variants and the ladder markers, structural differences or one-sided destribution of the electrical charge led to more apparent migration in polyacrylamide gel electrophoresis.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] K.Takayanagi: "Sequence and motif analysis of "off ladder" allelic variants at the DIS80 Locus"Progress in Forensic Genetics. 8. 55-57 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] C.Liu: "Investigation of ACTBP2 mutations in the Japanese population"Legal Med. 2. 75-78 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] C.Liu: "DIS80 subtyping by DCR-RFLP : new nomenclature and further characterization"Legal Med. 1. 210-216 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Takayanagi: "Mitochondrial DNA analysis : Identification"Res.Pract.Forens.Med.. 42. 87-90 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Liu, C., Takayanagi, K., Asamura, H., Ota, M., Saito, S., Tsukada, K., Fukushima, H.: "Investigation of ACTBP2 mutations in the Japanese population."Legal Med. 2. 75-78 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Liu, C., Arakura, A., Takayanagi, K., Asamura, H., Ota, M., Fukushima, H.: "D1S80 subtyping by PCR-RFLP : new nomenclature and further characterization."Legal Med. 1. 210-216 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sano, K., Takayanagi, K., Kaneko, T., Liu, C., Kinoshita, T., Nakamura, N., Asamura, H., Ito, M., Fukushima, H., Hotchi, M.: "Application of short tandem repeat of genomic DNA and mitochondrial DNA for identification of mixed-up tissue specimens."Pathology International. 50. 1-6 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Takayanagi, K., Hanawa, K., Liu, C., Asamura, H., Ota, M., Fukushima, H.: "Mitochondrial DNA analysis : Identification performed using the shed hairs of two missing persons."Res.Pract Forens.Med.. 42. 87-90 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Arakura, A., Liu, C., Ota, M., Fukushima, H.: "Subtyping and characterization of D1S80 alleles in a Japanese and population using PCR-RFLP."Int J.Legal Med. 111. 183-187 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Takayanagi, K., Kurata, F., Kawada, K., Liu, C., Asamura, H., Ota, M., Saito, S., Ishimoto, G., Fukushima, H.: "Automated profiling of nine STR loci : Allele frequencies in a Japnese poplation and paternity cases."Res.Pract.Forens.Med.. 41. 53-56 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Takayanagi: "Sequence and motif analysis of "off ladder" allelic variants at the DIS80 Locus"Progress in Forensic Genetics. 8. 55-57 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] C.Liu: "Investigation of ACTBP2 mutations in the Japanese population"Legal Med. 2. 75-78 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] C.Liu: "DIS80 subtyping by DCR-RFLP : new nomenclature and further characterization"Legal Med. 1. 210-216 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Takayanagi: "Mitochondrial DNA analysis : Identification"Res.Pract.Foreus.Med.. 42. 87-90 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] Liu,C et al: "DIS80 subtyping by PCR-RFLP : new nomenclature and further characterization"Legal Med. 1. 210-216 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 高柳 カヨ子 他: "DIS80の16塩基繰り返し断片における泳動の比較検討"DNA多型. 7. 149-151 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 福島 弘文: "DNA鑑定技術"BIOINDUSTRY. 8. 5-12 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 福島 弘文: "DNA多型解析法-過去から未来へ-"日法医誌. 53. 276-284 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Takayanagi et al.: "Automated Profiling of Nine STR Loci : allelo Frequencies in a Japanese population and Paternity cases" Res.Pract.Forens.Med.41. 53-56 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Arakura et al.: "Subtyping and characterization of DIS80 alleles in a Japanese population using PCR-RFLP" Int J Legal Med.111. 183-187 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 新倉, 明和: "DIS80のPCR-RFLP法によるサブタイピング" DNA多型. 6. 227-229 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2025-11-20  

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