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Microscopic imaging and analysis of single molecular function and inter molecular synchronization in Super molecular system

Research Project

Project/Area Number 10308030
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionWaseda University

Principal Investigator

ISHIWATA Shinichi  Waseda University, School of Science and Engineering, Professor, 理工学部, 教授 (10130866)

Co-Investigator(Kenkyū-buntansha) FUJITA Hideaki  ibid, Postdoctoral Fellow of Japan Society for Promotion of Science, 特別研究員(PD) (50318804)
FUNATSU Takashi  Waseda University, School of Science and Engineering, Associate Professor, 理工学部, 助教授 (00190124)
Project Period (FY) 1998 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥35,860,000 (Direct Cost: ¥34,300,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2001: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2000: ¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 1999: ¥5,600,000 (Direct Cost: ¥5,600,000)
Fiscal Year 1998: ¥17,400,000 (Direct Cost: ¥17,400,000)
KeywordsSupra molecular system / Single molecular function / Microscopic imaging / Molecular motors / SPOC / Molecular synchronization / Kinesin / Actomyosin / ミオシンV運動メカニズム / 分子シンクロ / 力学酵素 / キネシン運動メカニズム / キネシン結合様式 / 心拍周期 / 心筋再構成系 / 心筋収縮系 / シャペロニン / シャペニロン
Research Abstract

The contractile system of striated muscle, i.e., skeletal and cardiac muscle, spontaneously oscillates under the conditions intermediate between relaxation and contraction. We call this phenomenon SPOC (Spontaneous Oscillatory Contraction), in which each sarcomere oscillates in a thaw-tooth wave form composed of rapid yielding and slow shortening phase. Also, the length oscillation of sarcomere length propagates to the adjacent sarcomeres as a SPOC wave. (1) We found that the oscillation of sarcomere length is synchronized with the external mechanical impulse. When the repetitive stretching and shortening of rectangular wave form were externally imposed on a myofibril with an amplitude of about 10 nm every half-sarcomere, all the sarcomeres began to yield in phase following not only quick stretching but also quick shortening of myofibril. This result demonstrates that myosin motors, which function as a stochastic molecular machine on a single molecular level, are synchronized with the external mechanical impulse. This may be a typical example showing inter-molecular synchronization of proteins (enzymes) in an organized system (MS in prep.). (2) Kinesin is a processive molecular motor that carries organelles towards a plus end of a microtubule (MT) in a cell. We examined the unbinding force of kinesin from MT by using optical tweezers that trap the plastic bead on which single kinesin molecule was attached The unbinding force was measured by pulling a bead along the MT at a constant velocity. We found that, in the presence of 1 mM ADP, the unbinding force distribution showed only one peak at about 3pN. Hence, we could show that the single-headed binding in the presence of ADP was weak according to the model analysis. Combining the results obtained last year, we conclude that kinesin takes either single-headed or double-headed binding depending on the nucleotide state, which is consistent with the hand-over-hand mechanism (MS in prep.).

Report

(5 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (68 results)

All Other

All Publications (68 results)

  • [Publications] Kinoshita, Jr., K. et al.: "F_1 ATPase : a rotary motor made of a single molecule"Cell. 93. 21-24 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, H., Ishiwata, S.: "Spontaneous Oscillatory Contraction without Regulatory Proteins in Actin Filament-Reconstituted Fibers"Biophys.J.. 75. 1439-1445 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N. et al.: "Regulatory roles of MgADP and calcium in tension development of skinned cardiac muscle"J.Muscle Res.Cell Motil.. 19. 909-922 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishiwata, S. et al.: "Contractile Propertiles of Thin (Actin) Filament-Reconstituted Muscle Fibers"Adv.Exp.Med.Biol.. 453. 319-328 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N., Ishiwata S.: "Effects of pH on Spontaneous Tension Oscillation in Skinned Bovine Cardiac Muscle"Pflugers Arch.-Eur.J.Physiol. 438. 125-132 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kato, H. et al.: "Imaging of thermal activation of actomyosin motors"Proc.Natl.Acad. Sci.USA. 96. 9602-9606 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, H., Ishiwata, S.: "Tropomyosin modulates pH dependence of isometric tension"Biophys.J.. 77. 1540-1546 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N. et al.: "Effects of MgADP on length dependence of tension generation in skinned rat cardiac muscle"Circ.Res.. 86. e1-e6 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harada, Y. et al.: "Single-Molecule Imaging of RNA Polymerase-DNA Interactions in Real Time"Biophys.J.. 76. 709-715 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishii, Y. et al.: "Fluorescence resonance energy transfer between single fluorophores attached to a coiled-coil protein in aqueous solution"Chemical Physics. 247. 163-173 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yasuda, K. et al.: "Focal extraction of surface-bound DNA from a microchip using photo-thermal denaturation"Biotechniques. 28. 1006-1011 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawai, M. et al.: "Temperature change does not affect force between single actin filaments and HMM from rabbit muscles"Biophys.J.. 78. 3112-3119 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okano, K. et al.: "Position-specific release of DNA from a chip by using photothermal denaturation"Sensors & Actuators B. 64. 88-94 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K., Ishiwata, S.: "Temperature dependence of force, velocity and processivity of single kinesin molecules"Biochem.Biophys.Res.Comm.. 272. 895-899 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishizaka, T. et al.: "Characterization of single actomyosin rigor bonds -Load-dependence of lifetime and mechanical properties-"Biophys.J.. 79. 962-974 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K., Ishiwata, S.: "Nucleotide-dependent single-to double-headed binding of kinesin"Science. 291. 667-669 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K., Ishiwata, S.: "Thermal activation of single kinesin molecules with temperature pulse microscopy"Cell Motil.Cytoskel.. 49. 41-47 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 岡野和宣: "DNAプローブアレイを用いたDNA断片回収"電気学会論文誌. 121-E. 181-186 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N. et al.: "Acidosis and inorganic phosphate enhance length dependence of tension generation in skinned rat cardiac muscle"J.Physiol.. 536. 153-160 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N. et al.: "Length dependence of tension generation in rat skinned cardiac muscle : Role of titin in the Frank-Starling mechanism of the heart"Circulation. 104. 1639-1645 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, H. et al.: "Elementary steps of the cross-bridge cycle in bovine myocardium with and without regulatory proteins"Biophys.J.. 82. 915-928 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uemura, S. et al.: "Kinesin-microtubule binding is dependent on both nucleotide state and loading direction"Proc.Natl.Acad.Sci.USA.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishiwata, S. et al.: "Molecular interactions of actin"Springer Verlag. 79-94 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kinosita,Jr.,K., Yasuda,R., Noji,H., Ishiwata,S. and Yoshida,M.: "F1-ATPase : A rotary motor made of a single molecule"Cell. 93. 21-24 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita,H. and Ishiwata,S.: "Spontaneous oscillatory contraction without regulatory proteins in actin filament-reconstituted fibers"Biophys.J.. 75. 1439-1445 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishiwata,S., Funatsu,T. and Fujita,H.: "Contractile properties of thin (actin) filament-reconstituted muscle fibers"Adv.Exp.Med.Biol.. 453. 319-329 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda,N., Fujita,H., Fujita,T. and Ishiwata,S.: "Regulatory roles of MgADP and calcium in tension development of skinned cardiac muscle"J.Muscle Res.Cell Motil.. 19. 909-921 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda,N. and Ishiwata,S.: "Effects of pH on spontaneous tension oscillation in skinned bovine cardiac muscle"Pflugers Arch.. 438. 125-132 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kato,H., Nishizaka,T., Iga,T., Kinosita,Jr.,K. and Ishiwata,S.: "Imaging of thermal activation of actomyosin motors"Proc. Natl. Acad. Sci. USA. 96. 9602-9606 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita,H. and Ishiwata,S.: "Tropomyosin modulates pH dependence of isometric tension"Biophys. J.. 77. 1540-1546 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda,N., Kajiwara,H., Ishiwata,S. and Kurihara,S.: "Effects of MgADP on length dependence of tension generation in skinned rat cardiac muscle"Circ. Res.. 86. e1-e6 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yasuda,K., Okano,K. and Ishiwata,S.: "Focal extraction of surface-bound DNA from a microchip using photo-thermal denaturation"Biotechniques. 28. 1006-1011 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawai,M., Kawaguchi,K., Saito,M. and Ishiwata,S.: "Temperature change does not affect force between single actin filaments and HMM from rabbit muscles"Biophys. J.. 78. 3112-3119 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okano,K., Yasuda,K. and Ishiwata,S.: "Position-specific release of DNA from a chip by using photothermal denaturation"Sensors & Actuators B. 64. 88-94 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi,K. and Ishiwata,S.: "Temperature dependence of force, velocity and processivity of single kinesin molecules"Biochem. Biophys. Res. Comm.. 272(3). 895-899 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishizaka,T., Seo,R., Tadakuma,H., Kinosita,Jr.,K. and Ishiwata,S.: "Characterization of single actomyosin rigor bonds - Load-dependence of lifetime and mechanical properties-"Biophys. J.. 79(2). 962-974 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K. and Ishiwata, S.: "Nucleotide-dependent single- to double-headed binding of kinesin"Science. 291. 667-669 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okano, K., Chen, G., Kohara, Y., Kajiyama, T., Yasuda, K. and Ishiwata, S.: "Recovery of DNA fragment from a DNA probe array"Trans. IEE of Japan. vol.121-E, No.4. 181-186 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K. and Ishiwata, S.: "Thermal activation of single kinesin molecules with, temperature pulse microscopy"Cell Motil. Cytoskel.. 49. 41-47 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N., O-Uchi, J., Kajiwara, H., Sasaki, D., Ishiwata, S. and Kurihara, S.: "Acidosis and inorganic phosphate enhance length dependence of tension generation in skinned rat cardiac muscle"J. Physiol.. 536. 153-160 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuda, N., Sasaki, D., Ishiwata, S. and Kurihara, S.: "Length dependence of tension generation in rat skinned cardiac muscle : Role of titin in the Frank-Starling mechanism of the heart"Circulation. 104. 1639-1645 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, H., Sasaki, D., Ishiwata, S. and Kawai, M.: "Elementary steps of the cross-bridge cycle in bovine myocardium with and without regulatory proteins"Biophys. J.. 82. 915-928 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Uemura, S., Kawaguchi, K., Yajima, J., Edamatsu, M., Toyoshima, Y. and Ishiwata, S.: "Kinesin-microtubule binding is dependent on both nucleotide state and loading direction"Proc. Natl. Acad. Sci. U.S.A.. In press. (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishiwata,S., Tadashige,J., Masui,I., Nishizaka,T. and Kinosita,Jr.,K., eds. C.G. dos Remedios and D.D. Thomas: "Microscopic analysis of polymerization and fragmentation of individual actin filaments, Molecular Interactions of Actin : Actin Structure and Actin-binding Proteins"Springer Verlag, Heidelberg, 79-94. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawaguchi, K., Ishiwata, S: "Thermal activation of single kinesin melecules with temperatnre pulse microscopy"Cell Motil. Cytoskel. 49. 41-47 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 岡野和宣: "DNAプローブアレイを用いたDNA断片回収"電気学会論文誌. 121-E. 181-186 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fukuda, N. et al.: "Acidosis and inorganic phosphate enhance length dependence of tension generation in skinned rat cardiac muscle"J. Physiol. 536. 153-160 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fukuda, N. et al.: "Length dependence of tension generation in rat skinned cardiac muscle. Role of titin with Frank-Starling mechamism of the heart"Circulation. 104. 1639-1645 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fujita, H. et al.: "Elementary steps of the crose-bridge cycle in bovine myocardium with and without regulatory proteins"B.&phys. J.. 82. 915-928 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Uemura, S. et al.: "Kinesin-microtribute bonding is dependent on both nucleotide state and loading direction"Proc. Natl. Acad. Sci. USA. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yasuda,K, et al.: "Focal extraction of surface-bound DNA from a microchip using photo-thermal denaturation."Biotechniques. 28. 1006-1011 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawai et al.: "Temperature change does not affect force. between single actin filaments and HMM from rabbit muscles."Biophys.J.. 78. 3112-3119 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Okano,K. et al.: "Position-specfic release of DNA from a chip by using photothermal denaturation."Sensors and Actuators. B64. 88-94 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawaguchi,K.& Ishiwata,S.: "Temperature dependence of force, velocity and processivity of single kinesin molecules."Biochem.Biophys.Res.Comm.. 272. 895-899 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nishizaka,T. et al.: "Characterization of single actomyosin rigor bonds.-Load-dependence of life time and mechanical properties-"Biophys.J.. 79. 962-974 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawaguchi,k.& Ishiwata,S.: "Nucleotide-dependent single-to double-headed binding of kinesin."Science. 291. 667-669 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ishiwata,S. et al.: "Molecular Interactions of Actin (eds.C.G.dos Remedios & D.D.Thomas)"Springer Verlag, Heidelberg. 269 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fukuda,N. & Ishiwata,S.: "Effects of pH on spontaneous tension oscillation in skinned bovine cardiac muscle."Pfliigers Arch.-Enr.J.Physiol.. 438. 125-132 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kato.H.et al.: "Imaging of thermal activation of actomyosin motors"Proc.Natl.Acad.Sci.USA. 96. 9602-9606 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Fujita,H. & Ishiwata,S.: "Tropomyosin modnlates pH dependence of isometric tension."Biophys.J.. 77. 1540-1546 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Fukuda,N.et al.: "Effeets of MgADP on lenpth dependence of tension generation in skinned rat cardiac muscle."Circ.Res.. 86. e1-e6 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Harada,Y.et al.: "Single molecule imaging of RNA polymerase-DNA intoractions in real time."Biophys.J.. 76. 709-715 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ishii,Y.et al.: "Fluorescenu resonance energy framsfer Eedween single Jluorophores wttached to a coiled-coil protein in agueous solution."Chemical Physics. 247. 163-173 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kinosita, Jr., K.: "F_1-ATPase:A rotary motor made of a single molecule" Cell. 93. 21-24 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Fujita, H.: "Spontaneous oscillatory contraction without regulatory proteins in actin filament-reconstituted fibers" Biophys.J.75. 1439-1445 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Fukuda, N.: "Regulatory roles of MgADP and calcium in tansion development of skinned cardiac muscle." J.Muscle Res.Cell Motil.19. 909-922 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ishiwata, S.: "Contractile Properties of thin(actin)filament-reconstituted muscle fibers." Adv.Exp.Med.Biol.453. 319-328 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Harada, Y.: "Single molecule imaging of RNA polymerase-DNA interactions in real time." Biophys.J.76. 709-715 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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