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In-house X-ray intensity data-collection system for macromolecular complex crystals

Research Project

Project/Area Number 10359003
Research Category

Grant-in-Aid for Scientific Research (A).

Allocation TypeSingle-year Grants
Section展開研究
Research Field 広領域
Research InstitutionNara Institute of Science and Technology

Principal Investigator

HAKOSHIMA Toshio  Nara Institute of Science and Technology, Department of Molecular Biology, Professor, バイオサイエンス研究科, 教授 (00164773)

Co-Investigator(Kenkyū-buntansha) HIGASHI Tsuneyuki  Rigaku Co., X-ray Institute, Executive Director, X腺研究所, 部長(研究職)
清水 敏之  奈良先端科学技術大学院大学, バイオサイエンス研究科, 助手 (30273858)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥24,000,000 (Direct Cost: ¥24,000,000)
Fiscal Year 2000: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 1999: ¥8,700,000 (Direct Cost: ¥8,700,000)
Fiscal Year 1998: ¥11,000,000 (Direct Cost: ¥11,000,000)
Keywordstranscription / signal transduction / G protein / protein / DNA / molecular complex / X-ray / structural biology / 光学系 / ミラー / イメージングプレート / 構造生物学
Research Abstract

An in-house system for X-ray intensity data collection from bio-macromolecular crystals was developed. The system consists of a new X-ray detector(RAXIS-IV)and an improved fine focused(0.1 mm x 1.0 mm)X-ray generator(FR-C). Using two large(300 mm x 300 mm)imaging plates, the detector was designed to yield a short read-out time with high sensitivity. The X-ray beam was focused with Supper's double-mirror. The system was used for data collections of several protein-DNA complex protein-ligand complex and protein-protein crystals and structure determinations of these crystals were performed using the intensity data obtained. These are the mouse transcription factor IRF-2 complexed with DNA, the fission yeast transcription factor Papl complexed with DNA, mouse hippocampal serine protease neuropsin, the human small G protein RhoA in the GTP γS-Mg^<2+> bound form and its complex with the effector protein PKN, and the mouse radixin FERM domain in the free, IP3-bound, and ICAM-2-bound forms.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (48 results)

All Other

All Publications (48 results)

  • [Publications] K.Hamada: "Structural basis of the membrane-targeting"EMBO J.. 19(17). 4449-4462 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Fujii: "Structural basis for the DNA recognition"Nature Struct.Biol.. 7(10). 889-893 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Shimizu: "An open conformation of switch I"J.Biol.Chem.. 275(24). 18311-18317 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Hamada: "Crystallographic characterization of the"Acta Crystallogr.D. 56. 922-923 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Ihara: "Crystallization and preliminary"Acta Crystallogr.D. 56. 1042-1044 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kato, M., Mizuno, T., and Hakoshima, T.: "Crystallization and Preliminary X ray Analysis of the chemotaxis response regulator CheY complexed with the HPt Domain of the Anaerobic Sensor Protein ArcB."Acta Crystallogr.D.Biol.Crystallogr.. 54(1). 140-142 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ihara, K., Muraguchi, S., Kato, M., Shimizu, T., Kuroda, S., Kaibuchi, K., and Hakoshima, T.: "Crystal structure of human RhoA in a dominantly active form complexed with GTP analogue"J.Biol.Chem.. 273(6). 9656-9666 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kusumoto, M., Fujii, Y., Tsukuda, Y., Ohhira, T., Uegaki, K., Kyougoku, Y., Taniguchi, T., and Hakoshima, T.: "Crystallographic characterization of the DNA binding domain of interferon regulatory factor-2 complexed with DNA."J.Struct.Biol.. 121(3). 363-366 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujii, Y., Ohira, T., Kyougoku, Y,.Toda, T., Yanagida, M., and Hakoshima, T.: "Crystallographic characterization of Papl-DNA complex."Acta Crystallogr.D.Biol.Cristallogr.. 54(5). 1014-1016 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ueno, A., Ohashi, H., Nakano, T., Kimura, K., Shimizu, T., Hakoshima, T., and Iijima, H.: "Crystal structure of sulochrin derivatives."Chem.Pharm.Bull.. 46(12). 1929-1931 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sugimoto, Y., Kato, M., Shimizu, T., Hakoshima, T., and Isogai, A.: "Dechloroacutumine from cultured roots of Menispermum Dauricum."Phytochemistry. 49(5). 1293-1297 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kishi, T., Koto, M., Shimizu, T., Kato, K., Matsumoto, K., Yoshida, S., Shiosaka, S., and Hakoshima, T.: "Crystal structure of neurospin, a serine protease expressed in the limibic system of brain."Photon Factory Activity Report B. 15. 29 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hamada, K., Kato, M., Mizuno, T., and Hakoshima, T.: "Crystallographic characterization of a novel protein SixA that exhibits phospho-histidine phosphatase activity in the multistep His-Asp phosphorelay."Acta Crystallogr.D, Biol.Crystallogr. 55(1). 269-271 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kishi, T., Kato, M., Shimizu, T., Kato, K., Matsumoto, K,.Yoshida, S., Shiosaka, S., and Hakoshima, T.: "Crystal structure of neuropsin, a hippocampal protease involved in kindling epileptogenesis."J.Biol.Chem.. 274(7). 4220-4224 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kato, M., Mizuno, T., Shimizu, T., and Hakoshima, T.: "The crystal structure of the histidine containing phosphotransfer(HPt)domain of the anaerobic sensor kinase ArcB complexed with the chemotaxis response regulator CheY."Acta Crystallogr.D, Biol.Crystallogr.. 55(7). 1257-1263 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kato, M., Mizuno, T., Shimizu, T., and Hakoshima, T.: "The refined crystal structure of the histidine-containing phosphotransfer(HPt)domain of the anaerobic sensor kinase ArcB from Escherichia coli.at 1.57Å resolution."Acta Crystallogr.D, Biol.Crystallogr.. 55(11). 1842-1849 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Takahashi, N., Tsukamoto, Y., Shiosaka, S., Hakoshima, T., Arata, Y., Yamaguchi, Y., Kato, K., and Shimada, I.: "N-Glycan structure of murine hippocampus serine protease, neuropsin, produced in Trichoplusia ni cells."Glycoconjugate J.. 16. 405-414 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hirotsu, S., Abe, Y., Iwahara, S., Hori, H., Nishino, T., Okada, K., and Hakoshima, T.: "Crystallographic characterizationof a stress-induced multifunctional proteins, rat HBP23."J.Struct.Biol.. 126(1). 80-83 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hirotsu, S., Abe, Y., Okada, K., Nagahara, N., Hori, H., Nishino, T., and Hakoshima, T.: "Crystal structure of a stress-induced multifunctional 2-Cys peroxiredoxin, heme-binding protein 23kDa/proliferation-associated gene product."Proc.Natl.Acad.Sci.USA. 96(22). 12333-12338 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujii, Y., Shimizu, T., Kusumoto, M., Tsukuda, Y., Ohhira, T., Uegaki, K., Kyougoku, Y., Taniguchi, T.and Hakoshima, T.: "Crystal structure of an IRF/DNA complex reveals a novel DNA recognition and cooperactive binding to a tandem repeat of the core sequence."EMBO J.. 18(18). 5028-5041 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tomita, K., Ohishi, H., Nakanishi, I., Hakoshima, T., and Rich, A.: "Interaction between the left handed Z-DNA and polyamine -3 : The Crystal structure of a left handed Z-DNA hexisamer, d(CG)3, duplex complexed with synthetic polyamine reveals binding a polyamine in the minor groove."Nucleosides & Nucleotides. 18(6&7). 1567-1569 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Maesaki, R., Shimizu, T., Ihara, K., Kuroda, S., Kaibuchi, K., and Hakoshima, T.: "Biochemical and crystallographic characterization of a Rho effector domain of the protein serine/threonine kinase N in a complex with RhoA."J.Struct.Biol.. 126(2). 166-170 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Maesaki, R., Ihara, K., M., Shimizu, T., Kuroda, S., Kaibuchi, K., and Hakoshima, T.: "The structura basis of Rho effector recognition revealed by the Crystal structure of human RhoA complexed with the effector domain of of PKN/PRK1."Molecular Cell. 4(5). 798-803 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujii, Y., Shimizu, T., Kusumoto, M., Tsukuba, Y., Ohhira, T., Uegaki, K., Kyougoku, Y., Taniguchi, T.and Hakoshima, T.: "Crystal structure of an IRF/DNA complex reveals a novel DNA recognition and cooperactive binding to a tandem repeat of the core sequence"Photon Factory Activity Report B. 16. 261 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hamada, K., Shimizu, T., Matsui, T., Tsukita, Sh., Tsukita, Sa., Hakoshima, T.: "Structural basis of the membrane-targeting and unmasking mechanisms of ERM proteins revealed by the crystal Structures of the radixin FERM domain."EMBO J.. 19(17). 4449-4462 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fuji, Y., Shimizu, T., Toda, T., Yanagida, M.and Hakoshima, T.: "Structural basis for the DNA recognition diversity of bZIP transcription factors revealed by the crystal structure of Pap1/DNA complex."Nature Struct.Biol.. 7(10). 889-893 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shimizu, T., Ihara, K., Maesaki, R., Kuroda, S., Kaibuchi, K., and Hakoshima, T.: "An open conformation of switch I revealed by the crystal structure of a Mg^<2+>-free RhoA complexed with GDP : Implication for GDP/DTP exchange mechanism."J.Biol.Chem.. 275(24). 18311-18317 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hamada, K., Matsui, T., Tsukita, Sh., Tsukita, Sa., Hakoshima, T.: "Crystallographic characterization of the membrane-binding domain of radixin."Acta Cryst.D.Biol.Crystallogr.. 56(7). 922-923 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ihara, K., Shimizu, T., Maesaki, R., Amano, M., Kaibuchi, K., and Hakoshima, T.: "Crystallization and preliminary crystallographic analysis of the Rho-binding domain of bovine Rho-kinase."Acta Cryst.D.Biol.Crystallogr.. 56(8). 1042-1044 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujii, Y., Shimizu, T., and Hakoshima, T.: "Crystal structural of Pap1-DNA complex."SPrng-8 User Experiment Report. No.4(1999B). 176 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Hamada: "Structural basis of the membrane-targeting"EMBO J.. 19(17). 4449-4462 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Fujii: "Structural basis for the DNA recognition"Nature Struct.Biol.. 7(10). 889-893 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T,Shimizu: "An open conformation of switch I"J.Biol.Chem.. 275(24). 18311-18317 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Hamada: "Crystallographic characterization of the"Acta Crystallogr.D. 56. 922-923 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Ihara: "Crystallization and preliminary"Acta Crgstallogr.D. 56. 1042-1044 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] R.Maesaki: "The structural basis of Rhoeftector"Molecular Cell. 4. 793-803 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] R.Maesaki: "Biochemical and crystallographic characterization"J.Struct.Biol. 126. 166-170 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Fujii: "Crystal structure of an IRE/DNA complex"EMBO J.. 18. 5028-5041 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Hirotsu: "Crystal structure of a stress-induced"Proc.Natl.Acad.Sci.USA. 96. 12333-12338 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Hirotsu: "Crystallo graphic characterization"J.struct.Biol.. 126. 80-83 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Tomita: "The crysatl structure of a lel-handed"Nucleosides & Nucleotides. 18. 1567-1569 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M.Kato: "Crystallization and Preliminary X-ray Analysis..." Acta Cryst.D^-. D54. 140-142 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Ihara: "Crystal Structure of human RhoA..." J.Biol.Chem.273. 9656-9666 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Kusumoto: "Crystallographic characterization of the DNA-binding..." J.Struct.Biol.121. 363-366 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Fujii: "Crystallographic characterization of Pap1-DNA..." Acta Cryst.D54. 1014-1016 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Ueno: "Crystal Structure of sulochrin derivatines" Chem.Pharm.Bull.46. 1929-1931 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Sugimoto: "Dechloroacutumine, a possible biosynthetic..." Phytochemistry. 49. 1293-1297 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 箱嶋敏雄: "遺伝子産物(タンパク質)の形を観る" クバプロ, 60 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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