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Development of Systems for Comprehensive Genetic Diagnosis of Human Cancers and for Early Detection of Cancer-patients.

Research Project

Project/Area Number 10470040
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Pathological medical chemistry
Research InstitutionOKAYAMA UNIVERSITY

Principal Investigator

SHIMIZU Kenji  OKAYAMA UNIVERSITY, MEDICAL SCHOOL, Professor, 医学部, 教授 (10037286)

Co-Investigator(Kenkyū-buntansha) FUJIWARA Tazuko  OKAYAMA UNIV., MEDICAL SCHOOL, Research Associate, 医学部, 助手 (70108166)
ODA Megumi  OKAYAMA UNIV., MEDICAL SCHOOL, Professor, 医学部, 教授 (50160875)
OUCHIDA Mamoru  OKAYAMA UNIV., MEDICAL SCHOOL, Associate Professor, 医学部, 助教授 (80213635)
KAKU Shunkou  OKAYAMA UNIV., HOSPITAL, Medical Associate, 医学部・附属病院, 医員
SAKAI Akiko  OKAYAMA UNIV., MEDICAL SCHOOL, Research Associate, 医学部, 助手 (60205698)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥5,700,000 (Direct Cost: ¥5,700,000)
Fiscal Year 2000: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 1999: ¥2,900,000 (Direct Cost: ¥2,900,000)
Keywordsp107 gene / HD-PTP ; Tyrosine-phosphatase gene / Chromosome 3p21 / Tumor suppressor genes / ING1 gene / loss of heterozygosity (LOH) / Chromosome 13q34 / Genetic diagnosis with peripheral blood / ヘテロ接合性消失 / 融合遺伝子特異的分子診断 / 活性化変異特異的遺伝子診断 / 遺伝子内欠失 / チロシンホスファターゼ / AKT遺伝子 / 活性化変異特異的診断 / K-ras遺伝子
Research Abstract

We have found a novel tumor-specific mutation in the gene encoding E2F4 transcription regulator in a subset of genetically unstable (MI+) colorectal cancers in 1996. The mutation was found to be a result of the inactivating frame-shift mutation of the hMSH3 gene, a DNA mismatch-repair gene. Thus, the E2F4 gene was identified, for the first time, as a target of the defective mismatch repair function involving hMSH3 protein. This notion has been confirmed bv many supporting papers. Relevant to this result, we have found an interstitial deletion within the human p107 gene, a close relative of the tumor suppressor gene RB, in a diffuse-large B cell lymphoma cell line. We found the deletion was raised by a recombination between two Alu-repeats encompassing about 15 kbp. By our genomic scanning method, we found a novel region of loss of heterozygosity (LOH) at chromosome 14q24-31 in about 30% of renal cell carcinomas and identified two candidate tumor suppressor genes (TSG) in this narrow re … More gion. By conventional microsatellite analysis, we found a high incidence of LOH at chromosome 13q34 in human head and neck cancers. The known candidate TSG, ING1, resides at this site. We clarified the whole genomic structure of the ING1 gene and found 3 inactivating point mutations in 3 primary head and neck cancers with 13q34 LOH.These are the first evidence indicatins that the p107 and ING1 genes function as TSG.Further, we discovered a novel protein tyrosine-phosphatase gene, HD-PTP, as a novel TSG candidate. The gene resides at chromosome 3p21.3, the region thought to contain multiple TSG for many types of human cancer. By similar approaches we found at least 10 TSG candidates at 8 chromosomal regions in 7 cancer/tumor groups. In addition to TSG, we isolated a cDNA encoding a novel POZ-Zn-Finger protein, whose expression led the recipient cells to malignant phenotype, suggesting that the gene is a novel oncogene. The gene locates on 3q26-27 and related to the known oncogene, Bcl-6.
As to the molecular diagnosis of cancer, we reported a systematic method for detecting tumor-specific, fused-gene mRNAs in several bone/soft-tissue sarcomas. We have developed a new strategy to quantitate the amounts of free DNA in sera/plasma with a very high sensitivity (about ten thousand-fold higher than conventional methods). Cancer-specific genetic alterations, like as K-ras and p53 mutations, could be detected in these serum-DNA.Thus, promising strategies for early detection of potential cancer-patients were developed with free DNA in plasma/serum. Less

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (61 results)

All Other

All Publications (61 results)

  • [Publications] Yatsuki,H.: "Cloning of the Xenopus laevis aldolase C gene and analysis of its promoter function in developing Xenopus embryos and A6 cells."Biochim.Biophys.Acta.. 1442. 199-217 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sawai,N.: "Thrombopoietin enhances theproduction of myeloid cells, but not megakaryocytes, in juvenile chronic myelogenous leukemia."Blood. 91. 4065-4073 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shibuya,K.: "Physical and functional association of αLβ2 integrin (LFA-1) with DNAM-1 adhesion molecule."Immunity. 11. 1-20 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tanino,M.: "Transforming Activity of the RL-akt Gene, a c-akt Gene Activated by Long Terminal Repeat Insertion in Murine Leukemia RL♂1 Cells."Mol.Carcinogenesis. 26. 286-297 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Iwanaga,A.: "Functional mutation of DNA polymerase β found in human gastric cancer-inability of the base excision repair in vitro."Mutation Res.. 435. 121-128 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kukita,A.: "Osteoclast-derived zinc finger (OCZF) protein with POZ domain, a possible transcriptional repressor, is involved in osteoclastogenesis."Blood. 94. 1987-1997 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nishiyama,M.: "11p15 translocations involving the NUP98 gene in childhood therapy-related acutemyeloid leukemia/myelodysplastic syndrome."Genes Chromoso.Cancer. 26. 215-220 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yabe,Y.: "Human papillomavirus-5b DNA integrated in a metastatic tumor : cloning, nucleotide sequence and genomic organization."Int.J.Cancer. 80. 334-335 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 渡辺和英: "CYP2C遺伝子型判定における制限酵素消化の陽性対照の設計"TMD研究. 17(1). 17-23 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ichimura,K.: "Structure of the human retinoblastoma-related p107 gene and its intragenic deletion in a B-cell lymphoma cell line."Gene. 251. 37-43 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Gunduz,M.: "Genomic structure of the human ING1 gene and tumor- specific mutations detected in head and neck squamous cell carcinomas."Cancer Res.. 60. 3143-3146 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Naito,N.: "A reverse transcriptase-polymerase chain reaction assay in the diagnosis of soft tissue sarcomas."Cancer. 89(8). 1992-1998 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Matsubara,N.: "Multiple tumors and a novel E2F-4 mutation ; a case report."Digestion. 62(2-3). 213-216 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tsukuda,K.: "A novel activating mutation of the K-ras gene in human primary colon adenocarcinoma."Biochem.Biophys.Res.Commun.. 278(3). 653-658 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Toyooka,S.: "HD-PTP : A novel protein tyrosine phosphatase gene on human chromosome 3p21.3."Biochem.Biophys.Res.Commun.. 278(3). 671-678 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Horibe,K.: "Prognostic Factors in Childhood Acute Lymphoblastic Leukemia in Japan."Intern.J.Hematol.. 72. 61-68 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Isomura,H.: "Suppressive effect of human herpesvirus-6 on thrombopoietin-inducible megakaryocytic colony formation in vitro."J.Gen.Virol.. 81. 663-673 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Imashuku,S.: "Management of severe neutropenia with cyclosporin during initial treatment of Epstein-Barr virus-related hemophagocytic lymphohistiocytosis."Leukemia Lymphoma. 36(3-4). 339-346 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ito,S.: "A novel WD40 repeat protein, WDC146, highly expressed during spermatogenesis in a stage-specific manner."Biochem.Biophys.Res.Commun.. 280(3). 656-663 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 清水憲二: "ミスマッチ修復機構と発癌"医学のあゆみ. 194(9). 661-665 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yatsuki, H., et al: "Cloning of the Xenopus laevis aldolase C gene and analysis of its promoter function in developing Xenopus embryos and A6 cells."Biochim.Biophys.Acta. 1442. 199-217 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sawai, N., et al: "Thrombopoietin enhances the production of myeloid cells, but not megakaryocytes, in juvenile chronic myelogenous leukemia."Blood. 91. 4065-4073 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shibuya, K., et al: "Physical and functional association of αLβ2 integrin (LFA-1) with DNAM-1 adhesion molecule."Immunity. 11. 1-20 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tanino, M., et al: "Transforming Activity of the RL-akt Gene, a c-akt Gene Activated by Long Terminal Repeat Insertion in Murine Leukemia RL♂1 Cells."Mol.Carcinogenesis. 26. 286-297 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Iwanaga, A., et al: "Functional mutation of DNA polymerase β found in human gastric cancer- inability of the base excision repair in vitro."Mutation Res.. 435. 121-128 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kukita, A., et al: "Osteoclast-derived zinc finger (OCZF) protein with POZ domain, a possible transcriptional repressor, is involved in osteoclastogenesis."Blood. 94. 1987-1997 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nishiyama, M., et al: "11p15 translocations involving the NUP-98 gene in childhood therapy-related acute myeloid leukemia/myelodysplastic syndrome."Genes Chromoso.Cancer. 26. 215-220 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yabe, Y., et al: "Human papillomavirus-5b DNA integrated in a metastatic tumor : cloning, nucleotide sequence and genomic organization."Int.J.Cancer. 80. 334-335 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Watanabe, K., et al: "Construction of positive control vectors in restriction digestion for CYP2C genotyping."TMD-Res.. 17(1) (in Japanese). 17-23 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ichimura, K., et al: "Structure of the human retinoblastoma-related p107 gene and its intragenic deletion in a B-cell lymphoma cell line."Gene. 251. 37-43 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Gunduz, M., et al: "Genomic Structure of the Human ING1 Gene and Tumor-specific Mutations Detected in Head and Neck Squamous Cell Carcinomas."Cancer Res.. 60. 3143-3146 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Naito, N., et al: "A Reverse Transcriptase-Polymerase Chain Reaction Assay in the Diagnosis of Soft Tissue Sarcomas."Cancer. 89(8). 1992-1998 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Matsubara, N., et al: "Multiple tumors and a novel E2F-4 mutation. a case report."Digestion. 62(2-3). 213-216 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tsukuda, K., et al: "A novel activating mutation of the K-ras gene in human primary colon adenocarcinoma."Biochem.Biophys.Res.Commun.. 278(3). 653-658 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Toyooka, S., et al: "HD-PTP : A Novel Protein Tyrosine Phosphatase Gene on Human Chromosome 3p21.3."Biochem.Biophys.Res.Commun.. 278(3). 671-678 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Horibe, K., et al: "Prognostic Factors in Childhood Acute Lymphoblastic Leukemia in Japan."Inter.J.Hematol.. 72. 61-68 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Isomura, H., et al: "Suppressive effect of human herpesvirus-6 on the thrombopoietin-inducible megakaryocytic colony formation in vitro."J.Gen.Virol.. 81. 663-673 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Imashuku, S., et al: "Management of Severe Neutropenia with Cyclosporin During Initial Treatment of Epstein-Barr Virus-Related Hemophagocytic Lymphohistiocytosis."Leukemia Lymphoma. 36 (3-4). 339-346 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ito, S., et al: "A Novel WD40 Repeat Protein, WDC146, Highly Expressed during Spermatogenesis in a Stage-specific Manner."Biochem.Biophys.Res.Commun.. 280. 656-663 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shimizu, K: "Mismatch repair and tumorigenesis."IGAKUNOAYUMI. 194(9) (A review in Japanese). 661-665 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 渡辺和英: "CYP2C遺伝子型判定における制限酵素消化の陽性対照の設計"TMD研究. 17(1). 17-23 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ichimura,K.: "Structure of the human retinoblastoma-related p107 gene and its intragenic deletion in a B-cell lymphoma cell line."Gene. 251. 37-43 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Gunduz,M.: "Genomic structure of the human ING1 gene and tumor- specific mutations detected in head and neck squamous cell carcinomas."Cancer Res.. 60. 3143-3146 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Naito,N.: "A reverse transcriptase-polymerase chain reaction assay in the diagnosis of soft tissue sarcomas."Cancer. 89(8). 1992-1998 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Matsubara,N.: "Multiple tumors and a novel E2F-4 mutation ; a case report."Digestion. 62(2-3). 213-216 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tsukuda,K.: "A novel activating mutation of the K-ras gene in human primary colon adenocarcinoma."Biochem.Biophys.Res.Commun.. 278(3). 653-658 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Toyooka,S.: "HD-PTP: A novel protein tyrosine phosphatase gene on human chromosome 3p21.3."Biochem.Biophys.Res.Commun.. 278(3). 671-678 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Horibe,K.: "Prognostic Factors in Childhood Acute Lymphoblastic Leukemia in Japan."Intern.J.Hematol.. 72. 61-68 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Isomura,H.: "Suppresive effect of human herpesvirus-6 on thrombopoietin-inducible megakaryocytic colony ormation in vitro."J.Gen.Virol.. 81. 663-673 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Imashuku,S.: "Management of severe neutropenia with cyclosporin during initial treatment of Epstein-Barr virus-related hemophagocytic lymphohistiocytosis."Leukemia Lymphoma. 36(3-4). 339-346 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ito,S.: "A novel WD40 repeat protein, WDC146, highly expressed during spermatogenesis in a stage-specific manner."Biochem.Biophys.Res.Commun.. 280(3). 656-663 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 清水憲二: "ミスマッチ修復機構と発癌"医学のあゆみ. 194(9). 661-665 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tanino Motohiko: "Transforming activity of the RL-akt gene, a c-akt gene activated by long terminal repeat insertion in murine leukemia RL♂1 cells"Mol. Carcinogenesis. 26. 286-297 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Shibuya Kazuko: "Physical and functional association of αLβ2 integrin(LFA-1) with DNAM-1 adhesion molecule"Immunity. 11. 1-20 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kukita Akiko: "Osteoclast-derived zinc finger(OCZF) protein with POZ domain, a possible transcriptional repressor, is involved in osteoclastogenesis"Blood. 94. 1987-1997 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Iwanaga Akinari: "Functional mutation of DNA polymerase β found in human gastric cancer - inability of the base excision repair in vitro"Mutation Res.. 435. 121-128 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 渡辺和英: "CYP2C遺伝子型判定における制限酵素消化の陽性対照の設計"TMD研究. 17(1). 17-23 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nishiyama Mayumi: "11p15 translocations involving the NUP98 gene in childhood therapy-related acute myeloid leukemia/myelodysplastic syndrome"Genes Chromosomes Cancer. 26. 215-220 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takimoto Hidetaka: "Genetic alterations in the retinoblastoma protein-related p107 gene in human hematologic malignancies." Biochem.Biophys.Res.Commun.251. 264-268 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 清水憲二(共著): "がん遺伝子・がん抑制遺伝子" 中外医学社(東京)渋谷正史、山本雅 編, 317 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 清水憲二(共著): "癌化のメカニズムを解く" 羊土社(東京)横田淳 編, 125 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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