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PHYSICO-CHEMICAL STUDY ON PHARAONIS PHOBORHODOPSIN USING ITS RECOMBINANT PROTEIN

Research Project

Project/Area Number 10470473
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

KAMO Naoki  Hokkaido Univ., Grad. School of Pharmaceutical Sci., Prof., 大学院・薬学研究科, 教授 (10001976)

Co-Investigator(Kenkyū-buntansha) SUMI Masato  Hokkaido Univ., Grad. School of Pharmaceutical Sci., Inst., 大学院・薬学研究科, 助手 (30281819)
NARA Toshifumi  Hokkaido Univ., Grad. School of Pharmaceutical Sci., Inst., 大学院・薬学研究科, 助手 (30241350)
MIYAUCHI Seiji  Hokkaido Univ., Grad. School of Pharmaceutical Sci., Asso. Prof., 大学院・薬学研究科, 助教授 (30202352)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥10,600,000 (Direct Cost: ¥10,600,000)
Fiscal Year 1999: ¥4,900,000 (Direct Cost: ¥4,900,000)
Fiscal Year 1998: ¥5,700,000 (Direct Cost: ¥5,700,000)
Keywordspharaonis phoborhodopsin / expression system / bacteriorhodosin / absorption wavelength / M-intermediate / the decay rate of photo-intermediate / schiff base / Natronobacterium pharaonis / 発現系の構築 / バクテリオロドプシン / プロトンの移動 / ph測定 / 大腸菌での発現系 / 分子動力学計算
Research Abstract

1. We eastblishied an expression system of pharaonis phoborhodopsin (ppR).
2. A decay of a M-intermediate is very slow, but was accelerated 300-fold by an addition of 100 mM azide.
3. A possible reason of the slow M-decay was proposed and was confirmed experimentally.
4. A possible mechanism of color tuning was considered.
5. Molecular dynamics calculation of ppR was done.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (41 results)

All Other

All Publications (41 results)

  • [Publications] M.Iwamoto他3名: "Positioning proton-donating residues to the Schiff-base accelerates the M-decay of pharaonis phoborhodopsin"Biophysical Chem.. 79. 187-192 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M.Iwamoto他4名: "Proton uptake and release of pharaonis Phoraonis Phoborhodopsin detected by a photoelectrochemical cell"J.Phys.Chem.Part B. 103. 10311-10315 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y.Mukai他5名: "Light-induced denaturation of bacteriorhodopsin solubilized by octyl-β-glucoside"Protein Eng. 12. 755-759 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.Baba他5名: "Formation and characterization of planar lipid bilayer membranes from synthetic phytanyl-chained glycolipids"Biochim.Biopys.Acta. 1421. 91-102 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C.Nakazaki他5名: "Effect of detergents on light-induced denaturation of solubilized bacteriorhodopsin"J.Bioscience. 24. 68-68 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Q.Yang他5名: "Partitioning of triphenylalkylphosphonium homologues in gel bead-immobilized liposomes"Biochim.Biopys.Acta. 1417. 122-130 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.Hirayama他7名: "Photoinactivation of vesicular stomatitis virus with fullerene conjugated with methoxy polyethelene glycol amine"Biol.Pharm.Bull.. 22. 1106-1109 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M.Komatsubara他3名: "Cimetidine enhances the antiproliferative effect of 5-fluorouracil on colon caarcinome SW620"Anticancer Res.. 19. 1153-1157 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H.Abe他5名: "Conjugation of dipeptide to fluorescent dyes enhances its affinity for a dipeptide transporter (PEPT1) in human intestinal Caco-2 cells"Bioconjugate Chem.. 10. 24-31 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Koyama他3名: "Photoelectric response of halorhodopsin from Natronobacterium pharaonis"Bioelectrochem.Bioenerg.. 46. 289-292 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J.Hirayama他7名: "Virus inactivation in superoxide dismutase preparations by ultraviolet light irradiation"Biol.Pharm.Bull. 21. 621-623 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.Ueno他4名: "Control of the unidirectional topological orientation of a cross-linked complex composed of the bacterial photosynthestic reaction center and horse cytochrom c reconstituted into proteoliposomes"J.Biochem.. 124. 485-490 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Takao他3名: "Azide accelerates the decay of M-intermediate of pharaonis phoborhodopsin"Biophys.Chem.. 73. 145-153 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K.Shimono他3名: "V108 mutant of pharaonis phoborhodopsin : Substitution caused no absorption change but affected its M-state"J.Biochem.. 124. 404-409 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Kurosawa他5名: "Peroxidase-mimic activity of plasma-polymerized Fe-phthalocyanine derivatives"J.Photopolymer Sci.Tech.. 11. 313-314 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Kurosawa et al.: "Peroxidase-mimic activity of plasma-polymerized Fe-phthalocyanine derivatives."J. Photopolymer Sci.. 11. 313-314 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Shimono et al.: "Vl08 mutant of pharaonis phoborhodopsin : Substitution caused no absorption change but affected its M-state."J. Biochem.. 124. 404-409 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Takao et al.: "Azide accelerates the decay of M-intermediate of pharaonis : phoborhodopsin."Biophys. Chem.. 73. 145-153 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Ueno et al.: "Control of the unidirectional topological orientation of a cross-linked complex composed of the bacterial photosynthestic reaction center and horse cytochrom c reconstituted into proteoliposomes."J. Biochem.. 124. 485-490 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J. Hirayama et al.: "Virus inactivation in superoxide dismutase preparations by ultraviolet light irradiation."Biol. Pharm. Bull.. 21. 621-623 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Koyama et al.: "Photoelectric response of halorhodopsin from Natronobacterium pharaonis."Bioelectrochem. Bioenerg.. 46. 289-292 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Abe et al.: "Conjugation of dipeptide to fluorescent dyes enhances its affinity for a dipeptide transporter (PEPT I) in human intestinal Caco-2 cells. Bioconjugate Chem. 10:24-31"Bioconjugate Chem.. 10. 24-31 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Q. Yang et al.: "Partitioning of triphenylalkylphosphonium homologues in gel bead-immobilized liposomes : chromatographic measurement of their membrane partition coefficients."Biochim. Biophys. Acta. 1417. 122-130 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Iwamoto et al.: "Positioning proton-donating residues to the Schiff-base accelerates the M-decay of pharaonis phoborhodopsin expressed in Escherichia coli."Biophysical Chem.. 79. 187-192 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Komatubara et al.: "Cimetidine enhances the antiproliferative effect of 5-fluorouracil on colon carcinome SW620."Anticancer Res.. 19(2A). 1153-1157 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Mukai et al.: "Light-induced denaturation of bacteriorhodopsin solubilized by octy1-β-glucoside."Protein Eng.. 12. 755-759 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Iwamoto et al.: "Proton uptake and release of pharaonis Phoborhodopsin detected by a photo-electrochemical : cell."J. Phys. Chem. Part B. 103. 10311-10315

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] J. Hirayama et al.: "Photoinactivation of vesicular stomatitis virus with : fullerene conjugated with methoxy : polyethelene glycol amine."Biol. Pharm. Bull.. 22. 1106-1109 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T. Baba et al.: "Formation and characterization of planar lipid bilayer : membranes from synthetic phytanyl-chained glycolipids."Blochlm. Blopys. Acta. 1421. 91-102 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] C. Nakazaki et al.: "Effect of detergents on light-induced denaturation, of solubilized bacteriorhodopsin."J. Bioscience. 24. 68-68 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Mukai et al.: "Light-induced denaturation of bacteriorhodopsin solubilized by octyl-β-glucoside."J. Bioscience. 24. 68-68 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Iwamoto 他3名: "Positioning proton-donating residues to the Schiff-base accelerates the M-decay of pharaonis phborhodopsin"Biophsical Chem.. 79. 187-192 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M. Iwamoto 他4名: "Proton uptake and release of pharaonis Phoborhodopsin detected by a photoelectrochemical cell"J. phys. Chem. Part B. 103. 10311-10315 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Mukai 他5名: "Light-induced denaturation of bacteriorhodopsin solubilized by octyl-β-glucoside"Protein Eng. 12. 755-759 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T. Baba 他5名: "Formation and characterization of planar lipid bilayer membranes from synthetic phytanyl-chained glycolipids"Biochim, Biopys. Acta. 1421. 91-102 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] C. Nakazaki 他5名: "Effect of detergents on light-induced denaturation of solubilized bacteriorhodopsin"J. Bioscience. 24. 68-68 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Q. Yang 他5名: "Partitioning of triphenylalkylphosphonium homologues in gel bead-immobilized liposomes"Biochim. Biophys. Acta. 1417. 122-130 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Shimono 他4名: "V108 mutant of pharaonis phoborhodopsin: Substitution caused no absorption change but affected its M-state" J.Biochem.124. 404-409 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Takao 他3名: "Azide accelerates the decay of M-intermediate of pharaonis phoborhodopsin." Biophys.Chem.73. 145-153 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Ueno 他4名: "Control of the unidirectional topological orientation of a cross-linked complex composed of the bacterial photosynthestic reaction" J.Biochem.124. 485-490 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Koyama 他3名: "Photoelectric response of halorhodopsin from Natronobacterium pharaonis" Bioelectrochem.Bioenerg.46:289-292. 46. 289-292 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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