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Analyses of mechanisms of protein import into mitochondria by using unnatural amino acids.

Research Project

Project/Area Number 10480156
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionNagoya University

Principal Investigator

ENDO Toshiya  Nagoya University, Faculty of Science, Professor, 大学院・理学研究科, 教授 (70152014)

Co-Investigator(Kenkyū-buntansha) NISHIKAWA Shun-ichi  Nagoya University, Faculty of Science, Associate Professor, 大学院・理学研究科, 助教授 (10252222)
YOSHIHISA Tohru  Nagoya University, R.C.M.S., Associate Professor, 物質科学国際研究センター, 助教授 (60212312)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥13,600,000 (Direct Cost: ¥13,600,000)
Fiscal Year 2000: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 1999: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 1998: ¥7,500,000 (Direct Cost: ¥7,500,000)
Keywordstranslocation across the membranes / mitochondria / yeast / suppressor tRNA method / photocrosslinking / unnatural amino acid
Research Abstract

Most mitochondrial proteins are synthesized as precursor proteins in the cytosol and imported into mitochondria with the aid of protein translocation machineries in the outer and the inner membranes called the TOM complex and the TIM complex, respectively. In the present study, artificially aminoacylated suppressor tRNAs were used to introduce photoreactive unnatural amino acids into model mitochondrial precursor proteins to map interactions between precursor proteins and translocation machineries along the import pathway.
A model precursor protein, pSu9-DHFR, was arrested at two distinct stages, stage A (accumulated at 0℃) and stage B (accumulated at 30℃), in the translocation across the outer membrane and interactions between the arrested precursor protein and TOM proteins were analyzed at high resolution not achieved previously. Although the stage-A and the stage-B intermediates were previously assigned to the forms bound to the cis site and the trans site of the TOM complex, respect … More ively, the results of crosslinking indicate that the presequence of the intermediates at both stage A and stage B is already on the trans side of the outer lembrane. The mature domain is unfolded and bound to Tom40 at stage B while it remains folded at stage A. After dissociation from the TOM complex, translocation of the stage-B intermediate, but not of the stage-A intermediate, across the inner membrane was promoted by the intermembrane-space domain of Tom22. These results indicate that translocation of the presequence and unfolding of the mature domain are not necessarily coupled.
We have also applied the approach of site-specific photocrosslinking to trie processes of carrier proteins transport to the mitochondrial inner membrane. Photoreactive unnatural amino acids were introduced at various positions of ADP/ATP carrier (AAC), which was arrested at various stages along its import pathway to the mitochondrial inner membrane. Subsequent photcrosslinking rexperiments evealed that AAC interacts with Tom70 and Tom40 in the outer membrane, Tim9 and Tim 10 in the intermembrane space, and Tim22 in the inner membrane in a stage-dependent manner. Less

Report

(4 results)
  • 2001 Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (58 results)

All Other

All Publications (58 results)

  • [Publications] 野原哲也, 遠藤斗志也: "in vitro転写・翻訳系を用いたタンパク質合成"細胞工学別冊. 9. 37-45 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Oka et al.: "Loss of hsp7O-hsp4O chaperone activity causes abnormal nuclear distribution and aberrant microtubule formation in M-phase of Saccharomyces cerevisiae"J. Biol. Chem.. 273. 29727-29737 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S.Nishikawa, T.Endo: "Reinvestigation of the functions of the hydrophobic segment of Jem1p, a yeast endoplasmic reticulum membrane protein mediating nuclear fusion"Biochem. Biophys. Res. Commun.. 244. 785-789 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Kubo et al.: "Two distinct mechanisms opearte in reactivation of heat-denatured proteins by the mitochondrial Hsp7O/Mdjlp/Ygelp chaperone system"J. Mol. Biol.. 286. 447-464 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Yoshida et al.: "Dynamics and regulation of the stress response : meeting report on the stress response and molecular chaperones from Kyoto"Cell Stress & Chaperones. 4. 66-74 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Kanamori et al.: "Uncoupling of transfer of the presequence and unfolding of the mature domain in precursor translocation across the mitochondrial outer membrane"Proc. Natl. Acad. Sci. USA. 96. 3634-3639 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M.Esaki et al.: "Two distinct mechanisms drive protein translocation across the mitochondrial outer membrane in the late step of the cytochrome b_2 import pathway"Proc. Natl. Acad. Sci. USA. 96. 11770-11775 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Asai et al.: "Sec-dependent pathway and ΔpH-dependent pathway do not share a common translocation pore in thylakoidal protein transport"J. Biol. Chem.. 274. 20075-20078 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 吉久 徹, 遠藤斗志也: "葉緑体への蛋白質輸送"蛋白質核酸酵素. 45. 139-146 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Abe et al.: "Structural basis of presequece recognition by the mitochondrial protein import receptor Tom20"Cell. 100. 551-560 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Saeki et al.: "Identification of mammalian TOM22 as a subunit of the preprotein translocase of the mitochondrial outer membrane"J. Biol. Chem.. 275. 31996-32002 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西川周一, 遠藤斗志也: "細胞内におけるタンパク質の品質管理"化学. 56. 58-59 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Nakatsukasa et al.: "Mnl1p. an α-mannosidase-like protein in yeast Saccharomyces cerevisiae, is required for endoplasmic reticulum-associated degradation of glycoproteins"J. Biol. Chem. (Communication). 276. 8635-8638 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Muto et al.: "NMR identification of the Tom20 binding element in mitochondrial presequences"J. Mol. Biol.. 306. 137-143 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S.Nishikawa et al.: "Molecular chaperones in the yeast ER maintain the solubility of proteins for retro-translocation and degradation"J. Cell. Biol.. 153. 1061-1039 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Kawai et al.: "Loss of the mitochondrial Hsp7O functions causes aggregation of mitochondria in yerast cells"J. Cell Science. 114. 3565-3574 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Endo, D.Kohda: "Functions of outer membrane receptprs in mitochondrial protein import"Biochem. Biophys. Acta. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 遠藤斗志也: "オルガネラ形成と分子シャペロン:細胞が用意したタンパク質支援システム"生物の科学 遺伝別冊「ゲノムから見た細胞の世界」. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西川周一, 遠藤斗志也 (分担執筆): "酵母ラボマニュアル:酵母分子細胞生物学実験法 (山本正幸, 大矢禎一編) シュプリンガーフェアラーク (東京)"オルガネラの機能解析:ミトコンドリア. 191-211 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西川周一, 遠藤斗志也 (分担執筆): "新版 微生物学実験法 (大和田紘一, 黒岩常祥, 杉村純多, 高橋秀夫, 徳田 元, 渡辺 信編) 高段者サイエンティフィック (東京)"酵母の細胞内構造体の調製法. 121-125 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 遠藤斗志也 (分担執筆): "細胞内物質輸送のダイナミズム (米田悦啓, 中野明彦編) シュプリンガーフェアラーク東京"葉緑体への輸送. 65-73 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西川周一, 遠藤斗志也 (分担執筆): "生物化学実験法シリーズ (江尻慎一郎, 平 秀晴, 堤 賢一, 志村憲介編) 学会出版センター"無細胞蛋白質生合成系:蛋白質生産システム. 257-264 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 遠藤斗志也 (分担執筆, 編者): "タンパク質の一生〜タンパク質の誕生, 成熟から死まで (中野明彦, 遠藤斗志也 編)"プロテイントラフィックの第一歩〜生まれたタンパク質は, どこに, どうやって行けばよいのか. 62-74 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西川周一, 遠藤斗志也 (分担執筆): "分子シャペロンによる細胞機能制御 (永田和宏, 森正敬, 吉田賢右 編)"輸送:小胞体. 66-74 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 河合明美, 西川周一, 遠藤斗志也: "日本臨壯 増刊「ミトコンドリアとミトコンドリア病」(in press)"ミトコンドリアの生態学(in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Oka et al.: "Loss of hsp70-hsp40 chaperone activity causes abnormal nuclear distribution and abberrant microtubule formation in M-phase of Sarrharamvces cerevisiae"J. Biol. Chem.. 273. 29727-29737 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Nishikawa and T. Endo: "Reinvestigation of the functions of the hydrophobic segment of Jemlp, a yeast endoplasmic reticulum membrane protein mediating nuclear fusion"Biochem. Biophys. Res. Commun.. 244. 785-789 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Kubo et al.: "Two distinct mechanisms operate in reactivation of heat-denatured proteins by the mitochondrial Hsp70/Mdjlp/Ydgelp chaperone svstem"J. Mol. Biol.. 286. 447-464 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Yoshida et al: "Dynamics and regulation of the stress response : meeting reoort on the stress response and mlecular chacerones from Kyoto"Cell Stress & Chaperones. 4. 66-74 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Kanamori et al.: "Uncoupling of transfer of the presequence and unfolding of the mature domain in precursor translocation across the mitochondrial membrane"Proc. Natl. Acad. Sci. USA.. 96. 3634-3639 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Esaki et al.: "Two distinct mechanisms drive protein translocation across te mitochondrial outer membrane in the late step of the cytochrome b_2 import pathway"Proc. Natl. Acad. Sci. USA,. 96. 11770-11775 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Asai et al: "Sec-depedent pathway and DpH-dependent pathway do not share commontranslocation pore in thylakoidal protein ransport"J. Biol. Chem.. 274. 20075-20078 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Abe et al.: "Structural basis of presequence recognition by the mitocondrial import receptor Tom20"Cell. 100. 551-560 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Saeki, H. Suzuki, M. Tsuneoka, M. Naeda, R. Iwamoto, H. Hasuwa, S. Shida, T. Takahashi, M. Sakaguchi, T. Endo, Y. Miura, E. Mekada, and K. Mihara: "Identification of mammalian Tom22 as a subunit of the preprotein translocase of the mitochondrial outer membrane"J. Biol. Chem. 275. 31996-32002 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. Nakatsukasa, S. Nishikawa, N. Hosokawa, K. Nagata, and T. Endo: "Mnl1p, an α-mannosidase-like protein in yeast Saccharomyces cerevisiae, is required for endoolasmic reticulum-associated degradation of glycoprotein"J Biol. Chem.. 276. 8635-8638 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Muto, T. Obita, Y. Abe, T. Shodai, T. Endo, D. Kohda: "NMR identification of the Tom20 binding element in mitochondnal presequences"J. Mol. Biol.. 306. 137-143 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Nishikawa, S. W. Fewell, Y. Kato, J. L. Brodsky, and T. Endo: "Molecular chaperones in the yeast ER maintain the solubility of proteins for retro-translocation and degradation"J. Cell Biol.. 153. 1061-1039 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A. Kawai, S. Nishikawa, A. Hirata, and T. Endo: "Loss of the mitochondrial HSP70 functions causes aggregation of mitochondria in yeast cells"J. Cell Science. 114. 3565-3574 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Endo and D. Kohda: "Functions of outer membrane receptprs in mitochondrial protein import"Biochim. Biophys. Acta.. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.Nakatsukasa et al.: "Mnllp, an α-mannosidase-like protein in yeast Saccharomyces cerevisiae, is required for endoplasmic reticulum-associated degradation of glycoproteins."J.Biol.Chem.(Communication). (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Muto et al.: "NMR identification of the Tom20 binding element in mitochondrial presequences."J.Mol.Biol.. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Saeki et al.: "Identification of mammalian TOM22 as a subunit of the preprotein translocase of the mitochondrial outer membrane."J.Biol.Chem.. 275. 31996-32002 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Abe et al.: "Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20"Cell. 100. 551-560 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 西川周一,遠藤斗志也: "細胞内におけるタンパク質の品質管理"化学. 56. 58-59 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 遠藤斗志也(分担執筆,編者): "タンパク質の一生〜タンパク質の誕生,成熟から死まで(中野明彦,遠藤斗志也 編)"プロテイントラフィックの第一歩〜生まれたタンパク質は,どこに,どうやって行けばよいのか. 62-74 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Abe et al.: "Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20"Cell. 100(in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Kubo et al.: "Two distinct mechanisms operate in the reactivation of heat-denatured proteins by the mitochondrial Hsp70/Mdj1p/Yge1p chaperone system."J. Mol. Biol.. 286. 447-464 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Kanamori et al.: "Uncoupling of transfer of the presequence and unfolding of the mature domain in precursor translocation across the mitochondrial outer membrane."Proc. Natl. Acad. Sci. USA. 96. 3634-3639 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M.Esaki et al.: "Two distinct mechanisms drive protein translocation across the mitochondrial outer membrane in the late step of the cytochrome b2 import pathway"Proc. Natl. Acad. Sci. USA. 96. 11770-11775 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Asai et al.: "Sec-dependent pathway and DpH-dependent pathway do not share a common translocation pore in thylakoidal protein transport"J. Biol. Chem.. 274. 20075-20078 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 西川周一,遠藤斗志也(分担執筆): "新版 微生物学実験法(大和田紘一,黒岩常祥,杉山純多,高橋秀夫,徳田 元,渡辺 信編)"酵母の細胞内構造体の調製法. 121-125 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 遠藤斗志也(分担執筆): "細胞内物質輸送のダイナミズム(米田悦啓、中野明彦編)学会出版センター"葉緑体への輸送. 65-73 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Kanamori et al.: "Uncoupling of transfer of the presequence and unfolding of the mature domain in precursor translocation across the mitochondorial outer membarne." Proc.Natl.Acad.Sci.USA. 96(in press). (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Kubo et al.: "Two distinct mechanisms operate in the reactivation of heat-denatured proteins by the mitochondrial Hsp70/Mdjlp/Ygelp chaperone system." J.Mol.Biol.286. 447-464 (1997)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Oka et al.: "Loss of hsp70-hsp40 chaperone activity causes abnormal nuclear distribution and aberrant microtubule formation in M-phase of Saccharomyces cerevisiae" J.Biol.Chem.273. 29727-29737 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] S.Nishikawa and T.Endo: "Reinvestigation of the functions of the hydrophobic segment of Jemlp,a yeast endoplasmic reticulum membrane protein mediating nuclear fusion" Biochem.Biophys.Res.Commun.244. 785-789 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Nohara et al.(分担執筆): "Proceedings of the XIth International Congress on Photosynthesis (G.Gerab and J.Pusztai,eds.)" Cloning and characterization of chloroplast Sec Y proteins (in press), (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] 西川周一,遠藤斗志也 (分担執筆): "新版 微生物学実験法 (大和田紘一,黒岩常祥,杉山純多,高橋秀夫,徳田 元,渡辺 信,eds.)" 酵母の細胞内構造体の調製法 (印刷中), (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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