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Molecular Mechanism of Functional Expression of the Chaperonin

Research Project

Project/Area Number 10480177
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

KUWAJIMA Kunihiro  University of Tokyo ; Graduate School of Science, Professor, 大学院・理学系研究科, 教授 (70091444)

Co-Investigator(Kenkyū-buntansha) ARAI Munehito  University of Tokyo; Graduate School of Science, Research Associate, 大学院・理学系研究科, 助手 (90302801)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥13,100,000 (Direct Cost: ¥13,100,000)
Fiscal Year 1999: ¥2,900,000 (Direct Cost: ¥2,900,000)
Fiscal Year 1998: ¥10,200,000 (Direct Cost: ¥10,200,000)
KeywordsMolecular chaperone / chaperonin / GroEL / ES / Protein folding / α-lactalbumin / staphylococcal nuclease / green fluorescent protein / ATP / シャペロニン / フォールディング / 球状タンパク質 / スタフィロコッカルヌクレアーゼ / GFP
Research Abstract

The objective of the present study is to elucidate the molecular mechanism of functional expression of the Escherichia coli chaperonin GroEL/ES. For this purpose, we investigated the interactions of the chaperonin with folding intermediates of three globular proteins, α-lactalbumin (αLA), staphylococcal nuclease (SNase) and green fluorescent protein (GFP), which have very different physical properties. We also investigated physicochemically the interactions of GroEL with the nucleotides (ATP and ADP) that are indispensable for the chaperonin function and the analogs of the nucleotides (ATPγS and AMP-PNP). The following results were obtained.
(1) We used an SNase mutant, in which the refolding kinetics were significantly simplified, and apo-αLA that showed a simple single relaxation kinetics of refolding, as model target proteins of GroEL. We studied the effect of the chaperonin on the refolding kinetics of these target proteins by stopped-flow fluorescence spectroscopy. Especially for α … More LA, we succeeded the quantitative analysis of the reaction curves by computer simulations. When we added a nucleotide in the absence of GroES, only ATP was effective for reducing the affinity of GroEL for the target protein. However, when GroES was present, not only ATP but also the ATP analogs were found to effectively reduce the GroEL affinity for the target protein.
(2) We constructed E. coli expression systems for GFP and its Cycle3 mutant and studied their in vitro refolding reactions by fluorescence spectroscopy. These proteins can also be used as model target proteins of the chaperonin.
(3) We studied the interactions of GroEL with ADP and the ATP analog by titration calorimetry and fluorescence spectroscopy. In the latter method, we used the fluorescence intensity change of pyrenyl GroEL to monitor the interactions. We found that these nucleotides bound to GroEL in a non-cooperative manner and that there were two kinds of the binding sites with different affinities. Only ATP induced a cooperative fluorescence change of pyrenyl GroEL., suggesting that ATP hydrolysis was required for the cooperative change. From this results together with the above results in(1), the ATP hydrolysis and the resultant cooperative change are expected to by required for releasing the target protein form GroEL. Less

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (55 results)

All Other

All Publications (55 results)

  • [Publications] Ikeguchi, M.: "Transition state in the folding of α-lactalbumin probed by the 6-120 disulfide bond"Protein Sci.. 7. 1564-1574 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Mizuguchi, M.: "Equilibrium and kinetics of the folding of equine lysozyme studied by circular dichroism spectroscopy"J. Mol. Biol.. 283. 265-277 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tsurupa, G.P.: "Refolding kinetics of staphylococcal nuclease and its mutants in the presence of the chaperonin GroEL"J. Mol. Biol.. 277. 733-745 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Chaudhuri, T.K.: "Effect of the extra N-terminal methionine residue on the stability and folding of recombinant α-lactalbumin expressed in Escherichia coli"J. Mol. Biol.. 285. 1179-1194 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fujiwara, K.: "Folding-unfolding equilibrium and kinetics of equine β-lactoglobulin: equivalence between the equilibrium molten globule state and a burst-phase folding intermediate"Biochemistry. 38. 4455-4463 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Koshiba, T.: "Expression of a synthetic gene encoding canine milk lysozyme in Escherichia coli and characterization of the expressed protein"Protein Eng.. 12. 429-435 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kuwajima, K.: "Molten Globule"Encyclopedia of Molecular Biology (Creighton, T.E. ed) John Wiley & Sons, Inc. New York.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Maki, K.: "Effects of proline mutations on the folding of staphylococcal nuclease"Biochemistry. 38. 2213-2223 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Makio, T.: "Chaperonin-affected refolding of α-lactalbumin: Effects of nucleotides and the co-chaperonin GroES"J. Mol. Biol.. 293. 125-137 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Terada, T.P.: "Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry: evidence for noncooperative nucleotide binding"Biochim. Biophys. Acta. 1431. 263-281 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 桑島邦博: "シャペロニン:蛋白質立体構造形成の分子機械"パリティ. 14(12). 78-81 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Motojima, F.: "Hydrophilic residues at the apical domain of GroEL contribute to GroES binding but attenuate polypeptide binding"Biochem. Biophys. Res. Commun.. 267. 842-849 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Forge, V.: "Is folding of β-lactoglobulin non-hierarchic? Intermediate with native-like β-sheet and non-native α-helix"J. Mol. Biol.. 296. 1039-1051 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Arai, M.: "The role of the molten globule state in protein folding"Adv. Protein Chem.. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Arai, M.: "Effect of an Alternative Disulfide Bond on the Structure, Stability, and Folding of Human Lysozyme"Biochemistry. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ikura, T.: "Fast folding of Escherichia coli cylophilin A. A hypothesis of a unique hydrophobic core with a phenylalanine cluster"J. Mol. Biol.. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Koshiba, T.: "Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme"Biochemistry. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kuwajima, K.: "The molten globule state - the physical picture and biological significance"Mechanisms of protein folding 2nd ed. (Pain, R.H., ed.), Oxford University Press, Oxford. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ikeguchi, M. Fujino, M., Kato, M., Kuwajima, K. & Sugai, S.: "Transition state in the folding of α-lactalbumin probed by the 6-120 disulfide bond"Protein Sci. 7. 1564-1574 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Mizuguchi, M., Arai, M., Ke, Y., Nitta, K. & Kuwajima, K.: "Equilibrium and kinetics of the folding of equine lysozyme studied by circular dichroism spectroscopy"J. Mol. Biol.. 283. 265-277 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Tsurupa, G. P., Ikura, T., Makio, T. & Kuwajima, K.: "Refolding kinetics of staphylococcal nuclease and its mutants in the presence of the chaperonin GroEL"J. Mol. Biol.. 277. 733-745 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Chaudhuri, T. K., Horii, K., Yoda, T., Arai, M., Nagata, S., Terada, T. P., Uchiyama, H., Ikura, T., Tsumoto, K., Kataoka, H., Matsushima, M., Kuwajima, K. & Kumagai, I: "Effect of the extra N-terminal methionine residue on the stability and folding of recombinant α-lactalbumin expressed in Escherichia coli."J. Mol. Biol.. 285. 1179-1194 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fujiwara, K., Arai, M., Shimizu, A., Ikeguchi, M., Kuwajima, K. & Sugai S.: "Folding-unfolding equilibrium and kinetics of equine β-lactoglobulin : equivalence between the equilibrium molten globule sate and a burst-phase folding intermediate."Biochemistry. 38. 4455-4463 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Koshiba, T., Hayashi, T., Miwako, I., Kumagai, I., Ikura, T., Kawano, K., Nitta, K. & Kuwajima, K.: "Expression of a synthetic gene encoding canine milk lysozyme in escherichia coli and characterization of the expressed protein."Protein Eng.. 12. 429-435 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Maki, K., Ikura, T., Hayano, T., Takahashi, N. & Kuwajima, K.: "Effects of proline mutations on the folding of staphylococcal nuclease."Biochemistry. 38. 2213-2223 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Makio, T., Arai, M. & Kuwajima, K.: "Chaperonin-affected refolding of α-lactalbumin : Effects of nucleotides and the co-chaperonin GroES."J. Mol. Biol.. 293. 125-137 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Terada, T. P. & Kuwajima, K.: "Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry : evidence for noncooperative nucleotide binding."Biochim. Biophys. Acta. 1431. 269-281 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Motojima, F., Makio, T., Aoki, K., Makino, Y., Kuwajima, K. & Yoshida, M.: "Hydrophilic residues at the apical domain of GroEL contribute to GroES binding but attenuate polypeptide binding."Biochem. Biophys. Res. Commun.. 267. 842-849 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Forge, V., Hoshino, M., Kuwata, K., Arai, M., Kuwajima, K., Batt, C. A. & Goto, Y.: "Is folding of β-lactoglobulin non-hierarchic? Intermediate with native-like β-sheet and non-native α-helix."J. Mol. Biol.. 296. 1039-1051 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Arai, M. & Kuwajima, K.: "The role of the molten globule sate in protein folding."Adv. Protein Chem.. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Arai, M., Hamel, P., Kanaya, E., Inaka, K., Miki, K., Kikuchi, M. & Kuwajima, K.: "Effect of an Alternative Disulfide Bond on the Structure, Stability and Folding of Human Lysozyme."Biochemistry. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ikura, T., Hayano, T., Takahashi, N. & Kuwajima, K.: "Fast folding of Escherichia coli cylophilin A. A hypothesis of a unique hydrophobic core with a phenylalanine cluster."J. Mol. Biol.. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Koshiba, T., Yao, M., Kobashigawa, Y., Demura, M., Nakagawa, A., Tanaka, I., Kuwajima, K. & Nitta, K.: "Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme."Biochemistry. (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kuwajima, K.: "John Wiley & Sons, Inc., New York."Molten Globule. In Encyclopedia of Molecular Biology (Creighton, T. E., ed.). 1531-1534 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kuwajima, K. & Arai, M.: "The molten globule state-the physical picture and biological significance. In Mechanisms of protein folding 2nd ed. (Pain, R. H., ed.)"Oxford University Press, Oxford (in press). (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Fujiwara,K.,Arai,M.,Shimizu,A.,Ikeguchi,M.,Kuwajma,K.& Sugai,S.: "Folding-unfolding ebuilibrium and kinetics of equine beta-lactoglobilin : equivalence between the equibrium molten globute state and a burst-phase folding intermediate"Biochemistry. 38. 4455-4463 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Koshiba,T.,Hayashi,T.,Miwako,I..,Kumagai,I..,Ikura,T.,Kawano,K.,Nitta,K & Kuwajima,K.: "Expression of a synthetic gene encoding canine milk lysozyme in escherichia coli and characterization of the expressed protein"Protein Eng.. 12. 429-435 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Makio,T.,Arai,M & Kuwajima,K.: "Chaperonin-affected refolding of alpha-lactalbumin : Effects of nucleotides and the Co-chaperonin GroES"J.Mol.Biol.. 293. 125-137 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Terada,T.P. & Kuwajima,K.: "Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry : evidence for noncooperative nucleotide binding Biochim"Biophys.Acta. 1431. 269-281 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 桑島邦博: "シャペロニン : 蛋白質立体構造形成の分子機械"パリティ. 14・12. 78-81 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Motojima,F.,Makio,T.,Aoki,K.,Makino,Y.,Kuwajima,K.& Yoshida,M.: "Hydrophilic residues at the apical domain of GroEL contribute to groES binding but attenuate polypeptide biniding"Biochem.Biophys,Res.Commun.. 267. 842-849 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Forge,V.,Hoshino,M.Kuwata,K.,Arai,M.,Kuwajima,K.,Batt,C.A.& Goto,Y.: "Is folding of beta-lactoglobulin non-hierarchic? Intermadiate with native-like beta-sheet and non-native alpha-helix"J.Mol.Biol.. 296. 1039-1051 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Arai,M.& Kuwajima,K.: "The role of the molten globute state in protein folding"Adv.Protein Chem.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Arai,M.,Hamel,P.,Kanaya,E.,Inaka,K.,Miki,K.,Kikuchi,M.,& Kuwajima,: "Effect of an Alternative Disulfide Bond on the Structure,Stability,and Folding of Human Lysozyme"Biochemistry. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ikura,T.,Hayano,T.,Takahashi,N.& Kuwajima,K.: "Fast folding of Escherichia coli cylophilin A.A hypothesis of a unique hydrophobic core with a phenylalanine cluster"J.Mol.Biol.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Koshiba,T.,Yao,M.,Kobashigawa,Y,,Demura,M.,Nakagawa,A.,Tanaka,I..,Kuwajima,K.& Nitta,K.: "Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme"Biochemistry. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Arai,M & Kuwajima,K.: "Old and New Views of Protein Folding"Elsevier Science,Amsterdam. 318 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.P.Terada: "Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry:evidence for noncooperative nucleotide binding" Biochimica at Biophysica Acta. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Fujiwara: "Folding-unfolding equilibrium and kinetics of equine beta-lactoglobulin:Equivalence between the equilibrium molten globule state and a burst phase folding intermediate" Biochemistry. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Koshiba: "Expression fo a synthetic gene encoding canine milk lysozyme in Escherichia coli and characterization of the expressed protein" Protein Engineering. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.Maki: "Effects of Proline Mutations on the Folding of Staphpylococcal Nuclease" Biochemistry. 38. 2213-2223 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.K.Chaudhri: "Effect of the Extra N-terminal Methionine Residue on the Stability and Folding of Recombinant alpha-Lactalbumin Expressed in Escherichia coli" J.Mol.Biol.285. 1179-1194 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Mizugushi: "Equilibrium and Kinetics of the Folding of Equine Lysozyme Studied by Circular Dichroism Spectroscopy" J.Mol.Biol.283. 265-277 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Ikeguchi: "Transition state in the folding of alpha-lactalbumin probed by the 6-120 disulfide bond" Protein Science. 7. 1564-1574 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] G.P.Tsurupa: "Refolding Kinetics of Staphylococcal Nuclease and lts Mutants in the Presence of the Chaperonin GroEL" J.Mol.Biol.277. 733-745 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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