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Molecular cytogenetic study of species-specific chromosomal regions

Research Project

Project/Area Number 10554051
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section展開研究
Research Field 人類学(含生理人類学)
Research InstitutionThe University of Tokyo

Principal Investigator

HIRAI Momoki  The University of Tokyo Graduate School of Frontier Sciences Professor, 大学院・新領域創成科学研究科, 教授 (60156635)

Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥12,900,000 (Direct Cost: ¥12,900,000)
Fiscal Year 2000: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1999: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 1998: ¥6,500,000 (Direct Cost: ¥6,500,000)
Keywordschromosome / comparative genomic hybridization / chromosome 2 / chimpanzee / repeated sequence / 霊長類 / CGH / シンテニー / 核型 / ゲノム
Research Abstract

Since the draft sequences of the human genome were disclosed and publicized, this research field encounters a new phase. Gene function and biological significance of the constitution of human genome may be the main theme for further investigation. In the present study, search for the species-specific chromosomal regions has been attempted. In the present study, interests were focused on the evolutionary fusion point of human chromosome 2.
It has been known that human chromosome 2 originated from the fusion of two ancestral primate chromosomes. This has been confirmed by chromosome banding and fluorescence in situ hybridization (FISH) with human chromosome-2-specific DNA libraries. In this study, the order of 38 cosmid clones derived from the human chromosome region 2q12-q14 was exactly determined by high-resolution FISH in human chromosome 2 and its homologous chromosomes in chimpanzees (Pan trogrodyzdes, 2n=48) and cynomolgus monkeys (Macaca fascicularis, 2n=42). This region includes the telomere-to-telomere fusion point of two ancestral ape-type chromosomes. As a result of comparisons with chimpanzee and cynomolgus monkey chromosomes, human chromosome region 2q12-q14 was found to correspond to the short arms of chimpanzee chromosomes 12 and 13 and cynomolgus monkey chromosomes 9 and 15. It is noted that no difference was detected in the relative order of the cosmid clones between human and chimpanzee chromosomes. This suggests that two ancestral ape-type chromosomes fused tandemly at telomeres to form human chromosome 2, and the genomic organization of this region is thought to be considerably conserved. In the cynomolgus monkey, however, the order of clones in each homologue was inverted. Interestingly, the number of repeated arrays around the fusion point was found to exhibit polymorphism.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Kasai,F.: "Comparative FISH mapping of ancestral fusion point of human chromosome 2."Chromosome Research. 8. 727-735 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 肥田宗友: "霊長類の完全長cDNAライブラリーの作製と解析"霊長類研究. 16. 95-110 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 数藤由美子: "ヒトと類人猿の染色体レベルの違い"蛋白質 核酸 酵素. 45(16). 30-37 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nagasawa,K.: "Identification and characterization of human DNA polymerase beta 2, a DNA polymerase beta-related enzyme."J.Biol.Chem.. 275(40). 31233-31238 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kasai, F.: "Comparative FISH mapping of ancestral fusion point of human chromosome 2."Chromosome Research. 8. 727-735 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hida, M.: "Construction and preliminary analysis of full-length cDNA libraries of primates."Primate Research. 16. 95-110 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Suto, Y.: "Chromosomal difference between humans and great apes."PNE. 45(16). 30-037 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kasai,F.: "Comparative FISH mapping of ancestral fusion point of human chromosome 2."Chromosome Research. 8. 727-735 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 肥田宗友: "霊長類の完全長cDNAライブラリーの作製と解析"霊長類研究. 16. 95-110 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 数藤由美子: "ヒトと類人猿の染色体レベルの違い"蛋白質 核酸 酵素. 45(16). 30-37 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nagasawa,K.: "Identification and characterization of human DNA polymerase beta 2, a DNA polymerase beta-related enzyme."J.Biol.Chem.. 275(40). 31233-31238 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Jeong: "Identification of a novel human voltage-gated sodium channel alpha subunit gene, SCN12A"Biochem.Biophys.,Res.Com.. 267. 262-270 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] D.Choi: "Developmentally-regulated expression of mNapor encoding an apoptosis-induced ELAV-type RNA binding protein. Gene 237 : 135-142 (1999)"Gene. 237. 135-142 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] "Genomic sturcture and chromome location of RPL27A/Rpl27a, the genes encoding human and mouse ribosomal protein L27A"Cytogenet.Cell Genet.. 85. 248-251 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] J.Kusuda: "Molecular cloning of Frizzled-10, a novel member of the Frizzled gene family"Biochem.Biophys.Res.Com.. 262. 39-43 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] J.Kusuda: "cDNA cloning and chromosome mapping of the mouse casein kinase K epsilon gene (Csnk1e)"Cytogenet.Cell Genet.. 87. 99-101 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Tominaga: "Role of human Dds1(Chk2) kinase in DNA damage checkpoint and its regulation by p53"J.Biol.Chem.. 274. 31467-31 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 栗原靖之: "Non-RI実験の最新プロトコール"羊土社. 199 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] N.Sagara: "Molecular cloning differntial expression, and chromosomal localization of human Frizzled-1,Frizled-2,and Frizzled-7." Biochem.Biophys.Res.Com.252. 117-122 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Tokuhara: "Molecular cloning of human Frizzled-6." Biochem.Biophys.Res.Com.243. 622-627 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] J.Kusuda: "Cloning and chromosome mapping of the human casein kinase 1 gamma 3 gene(CSNK1G3)" Cytogenet.Cell.Genet.83. 101-103 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] D.Shiokawa: "cDNA cloning of human DNase gamma: chromosomal localization of its gene and enzymatic properties of recombinant protein" Apoptosis. 3. 89-95 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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