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Capture of transposons utilizing mutable chlorophyll mutant in rice and tomato

Research Project

Project/Area Number 10556002
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Breeding science
Research InstitutionOkayama University

Principal Investigator

MAEKAWA Masahiko  Res. Inst. for Biores., Okayama University, Associate Professor, 資源生物科学研究所, 助教授 (00142703)

Co-Investigator(Kenkyū-buntansha) SAKAMOTO Wataru  Res. Inst. for Biores., Okayama University, Associate Professor, 資源生物科学研究所, 助教授 (20222002)
MASUDA Masaharu  Fac. Agr., Okayama University, Professor, 農学部, 教授 (90026617)
OGURA Yutaka  Res. Inst. for Biores., Okayama University, Assistant Professor, 資源生物科学研究所, 助手 (60224193)
OKUMOTO Yutaka  Grad. Sch. Agr., Kyoto Univ., Associate Professor, 大学院・農学研究科, 助教授 (90152438)
HASEGAWA Hiroshi  Sch. Env. Sci., Univ. Shiga Pref., Professor, 環境科学部, 教授 (00090457)
本吉 總男  岡山大学, 資源生物科学研究所, 教授 (90230052)
Project Period (FY) 1998 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥12,400,000 (Direct Cost: ¥12,400,000)
Fiscal Year 2001: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2000: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1999: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1998: ¥4,700,000 (Direct Cost: ¥4,700,000)
Keywordsmutability / variegation / chlorophyll mutant / transposition / transposon / rice / tomato
Research Abstract

For isolating a new transposon in higher plants, the selection of mutants resistant to hydroxyproline (a proline analog) was conducted, because some mutants resistant to an amino acid analog have been controlled by curious genetic behavior. However, through the study no evidence for transposable elements was obtained. (Hasegawa).
Unlike most other cut-and-paste type transposons, the transposition frequency of Tam3 in Antirrhinum is tightly controlled by temperature : Tam3 transposes rarely at 25 ℃, but much more frequently at 15 ℃. We found that temperature shift induced a remarkable change of the methylation state of the Tam3 end regions : higher temperature resulted in hyper-methylation, while lower temperature resulted in reduced methylation (kishima).
We carried out PCR with primers specific to the TIRs of a 1.3-kb transposon-like element Lyt1 from tomato to search for new members of the Lyt family. Among the amplified products, one fragment had a 2.7-kb insertion in a sequence corre … More sponding to Lyt1 and the putative Lyt element containing this sequence was termed Lyt2. The copy number of Lyt2-related sequences in the tomato genome was estimated to be approximately 20 by Southern blot analysis (Ogura and Masuda).
The mutable slender glume gene (slg), a recessive mutant gene induced from rice variety Gimbozu, was assumed to be controlled by a newly found transposon (named Sairyu, meaning slender glume in Japanese) belongs to MITEs family in rice, we suggest that slg is inactivated Rurm1 due to the insertion of Sairyu and that reverse mutation of slg is ascribed to the reactivation of Rurm1 caused by the deletion of Sairyu (Okumoto).
An Arabidopsis variegated mutant was isolated by T-DNA tagging. Cloning and molecular characterization of the VAR2 locus revealed that it potentially encodes a chloroplastic homologue of FtsH, an ATP-dependent metalloprotease that belongs to a large protein family involved in various cellular functions (Sakamoto). A mutable chlorophyll mutant was induced from stable chlorophyll mutants by carbon ion beam irradiation. This mutability of the induced mutant was inherited, suggesting that cryptic silent transposon might be reactivated by ion beam irradiation (Maekawa and Tanaka). Less

Report

(5 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (66 results)

All Other

All Publications (66 results)

  • [Publications] Chen, L. et al.: "Plant regeneration via somatic embryogenesis after somatic hybridization between Lycopersicon esculentum and L. peruvian"SABRAO Journal of Breeding & Genetics. 30. 25-34 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Iwamoto, M. et al.: "Evolutionary relationship of plant catalase genes inferred from exon-intron structures : isozyme divergence after the separation of"Theor. Appl. Genet. 97. 9-19 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyl mutant"JAERI-Review. 98-016. 68-70 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "A gene for variegated albino linked to lg on chromosome 4"Rice Genet, Newslett.. 15. 107-108 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamashita, S. et al.: "Tam3 in Antirrhinum majus is exceptional transposon In resistant to alteration by abortive gap repair : identification of nested"Molecular and General Genetics. 259. 468-474 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kishima, Y. et al.: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies able to"Plant Molecular Biology. 39. 299-308 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ma, Y.et al.: "Efficient callus induction and shoot regeneration by anther culture in male sterile mutants of tomato (Lycopersicon esculentum Mill"Sci.Rep.Fac.Agric., Okayama Univ.. 88. 57-63 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "A marker line H-126, carries a genetic factor making chlorophyl mutation variegated"JAERI-Review. 99-025. 34-36 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Characterization and genetic analysis of male sterile mutant induced tomato cv.First, having mature pollen stainable with"J.Japan Soc. Hort Sci.. 68. 566-568 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okumoto, Y. et al.: "A mutable slender glume gene in rice (Oryza sativa L.)"Gamma Field Symposia. 38. 29-41 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Teraishi, M. et al.: "Identification of a mutable slender glume gene in rice (Oryza sativa L.)"Molecular and General Genetics. 261. 487-494 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamashita, S. et al.: "Resistance to gap repair of the transposon Tam3 in Antirrhinum majus : a role of the end regions"Genetics. 153. 1899-1908 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Non-segregation of albino character in rice plant heterozygous for variegated albino"Rice Genet.Newslett.. 17. 51-54 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Restoration of male sterility in seasonally dependent male sterile mutant tomato, Lycopersicon esculentum cv. First"J.Japan Soc.Hort.Sci.. 69. 557-562 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Zhao, C.-M.et al.: "A chlorate resistant mutant of rice (Oryza sativa L.) with normal nitrate uptake and nitrate reductase activity"Breed.Sci.. 50. 9-15 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, N. et al.: "The isolation and characterization of a waxy mutant of diploid wheat (Triticum monococcum L.)"Plant Sci.. 160. 595-602 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kitamura, S. et al.: "Position effect of the excision frequency of the Antirrhimun transposon Tam3 : Implication for position-dependent methylation degree in the ends"Plant Molecular Biology. 47. 475-490 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Carbon and helium ion beam irradiation effects on seedling and plant characters of tomato cv, First"JAERI-Review. 2001-039. 64-66 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyll mutant of rice"JAERI-Review. 2001-039. 42-44 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Teraishu, M.et al.: "Identification of YAC clones containing the mutable slender glume locus slg in rice (Oryza sativa L)"Genome. 44. 1-6 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Chen, L. et al.: "Plant regeneration via somatic embryogenesis after somatic hybridization between Lycopersicon esculentum and L peruvianum"SABRAO Journal of Breeding & Genetics. 30. 25-34 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Iwamoto, M. et al.: "Evolutionary relationship of plant catalase genes inferred from exon-intron structures : isozyme divergence after the separation of monocots and dicots"Theor. Appl. Genet.. 97. 9-19 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyl mutant"JAERI-Review. 98-016. 68-70 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "A gene for variegated albino linked to lg on chromosome 4"Rice Genet. Newslett.. 15. 107-108 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamashita, S. et al.: "Tam3 in Antirrhinum majus is exceptional transposon in resistant to alteration by abortive gap repair : identification of nested transposons"Molecular and General Genetics. 259. 468-474 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kishima, Y. et al.: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies able to transpose"Plant Molecular Biology. 39. 299-308 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ma, Y. et al.: "Efficient callus induction and shoot regeneration by anther culture in male sterile mutants of tomato (Lycopersicon esculentum Mill. cv. First)"J. Japan Soc. Hort. Sci.. 68. 768-773 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ma, Y. et al.: "Partial inhibition of pollen degradation by gibberellic acid in male sterile tomato mutants derived from cv. First (Lycopersicon esculentum Mill.)"Sci. Rep. Fac. Agric., Okayama Univ.. 88. 57-63 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "A marker line H-126, carries a genetic factor making chlorophyl mutation variegated"Rice Genet. Newslett.. 16. 61-62 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Possibility of induction of somatic mutation by ion beam irradiation in lethal chlorophyl mutant of rice"JAERI-Review. 99-025. 34-36 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Characterization and genetic analysis of male sterile mutant induced in tomato cv. First, having mature pollen strainable with acetocarmine"J. Japan Soc. Hort Sci.. 68. 566-568 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Okumoto, Y. et al.: "A mutable slender glume gene in rice (Oryza sativa L.)"Gamma Field Symposia. 38. 29-41 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Teraichi, M. et al.: "Identification of a mutable slender glume gene in rice (Oryza sativa L.)"Molecular and General Genetics. 2261. 487-494 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamashita, S. et al.: "Resistance to gap repair of the transposon Tam3 in Antirrhinum, majus : a role of the end regions"Genetics. 153. 1899-1908 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Non-segregation of albino character in rice plant heterozygous for variegated albino"Rice Genet. Newslett.. 17. 51-54 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Restoration of male sterility in seasonally dependent male sterile mutant tomato, Lycopersicon esculentum cv. First"J. Japan Soc. Hort. Sci.. 69. 557-562 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Zhao, C. -M. et al.: "A chlorate resistant mutant of rice (Oryza sativa L.) with normal nitrate uptake and nitrate reductase activity"Breed. Sci.. 50. 9-15 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fujita, N. et al.: "The isolation and characterization of a waxy mutant of diploid wheat (Triticum monococcum L.)"Plant Sci.. 160. 595-602 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kitamura, S. et al.: "Position effect of the excision frequency of the Antirrhimun transposon Tam3 : Implication for position-dependent methylation degree in the ends of the element"Plant Molecular Biology. 47. 475-490 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda, M. et al.: "Carbon and helium ion beam irradiation effects on seedling and plant characters of tomato cv, First"JAERI-Review. 2001-039. 42-44 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maekawa, M. et al.: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyll mutant of rice"JAERI-Review. 2001-039. 64-66 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Teraishi, M. et al.: "Identification of YAC clones containing the mutable slender glume locus slg in rice (Oryza sativa L)"Genome. 44. 1-6 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Masuda et al.: "Carbon and helium inon beam irradiation effects on seedling and plant characters of tomato cv, Fist"JAERI-Review. 2001-039. 42-44 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kitamura et al.: "Position effect of the excision frequency of the Antirrhimun transposon Tam3 : lmplication for position-dependent methylation degree in the ends"Plant Molecular Biology. 47. 475-490 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 貴島祐治: "植物トランスポゾンの転移機構に関する分子育種学的研究"育種学研究. 3. 169-175 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Fujta et al.: "The isolation and characterization of a waxy mutant of diploid wheat (Triticum monococcum L)"Plant Sci.. 160. 595-602 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ishikawa et al.: "The accumulation pattern in developing seeds and its relation to fatty acid variation in soybean"Plant Breed.. 120. 417-423 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Maekawa et al.: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyll Mutant of rice"JAERI-Review. 2001-039. 64-66 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Sakamoto,W., et al.: "Complex organization of the rice Purpla leaf locus involved in tissue-specific accumulation of anthocyanin."Rice Genetics IV. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Zhao,C.M., et al.: "A chlorate resistant mutant of rice (Oryza sativa L.) with normal nitrate uptake and nitrate reductase activity."Breeding Science. 50. 9-15 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Teraishi.M., et al.: "Identification of YAC clones.containing the mutable slender glume locus slg in rice (Oryza sativa L.)."Genome. 44. 1-6 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nagano,H., et al.: "Structural differences in the vicinity of the waxy locus among Oryza species with AA-genome : identification of variable region."Theoretical and Applied Genetcs. 100. 376-383 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kitamura.K., et al.: "Position effect of the excision frequency of the Antirrhirumtransposon Tam3 : Implication for position-dependent methylation degree in the ends of the element."Plant Molecular Biology. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Maekawa et al.: "Genetic mechanism of variegation of a chlorophyll mutant originated from the cross between distantly related rice varieties"Rice Genetics IV. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 坂本 亘,前川雅彦: "アントシアニン生合成の制御系"育種学最近の進歩. 41. 57-60 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takechi, K., et al.: "Characterization of a flower-specific gene encoding a putative myrosinase binding protein in Arabidopsis thaliana"Plant Cell Physiol. in press. (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takechi, K., et al.: "Establishment of in situ hybridization using Technovit resion in Arabidopsis thaliana"Plant Mol. Biol. Rep.. 17. 43-51 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamashita, S., et al.: "Resistance to gap repair of the transposon Tam3 in Antirrhinum majus. A role of the end region"Genetics. 153. 1899-1908 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nagano, H., et al.: "Genomic organization of the 260kb surrounding the waxy locus in a Japonica rice"Genome. 42. 1121-1126 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kishima, Y., et al.: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of able to transpose"Plant Mol. Biol.. 39. 299-308 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Masao Iwamoto: "Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots." Theor.Appl.Genet.97. 9-19 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Masahiko Maekawa: "Induction of somatic mutation by ion beam irradiation in lethal chlorophyl mutant." JAERI-Review. 98-016. 68-70 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 枡田正治: "トマト'ファースト'種子へのガンマー線照射によって誘発された突然変異のスペクトラム-とくに葉緑素部分欠損形質について-" 園学雑. 67. 583-588 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Masaharu Masuda: "Characterization and genetic analysis of male sterile mutant induced in tomato cv.First,having mature pollen stained normally with acetocarmine." J.Japan.Soc.Hort.,Sci.in press. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yuji Kisima: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies able to transpose." Plant Molecular Biology. in press. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] M.Teraishi: "Identification of a mutable slender glume gene in rice (Oryza sativa L.)" Mol.Gen.Genet.in press. (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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