• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Generation and characterization of enhancer trap lines in rice

Research Project

Project/Area Number 10556003
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Breeding science
Research InstitutionNatiomal Institute of Genetics

Principal Investigator

KURATA Nori  Natiomal Institute of Genetics, Genetic Strains Research Center, Associate Professor, 系統生物研究センター, 助教授 (90178088)

Co-Investigator(Kenkyū-buntansha) NONOMURA Kenichi  Natiomal Institute of Genetics,Experimental Farm,Assistant Professor, 実験圃場, 助手 (10291890)
ITO Yukihiro  Natiomal Institute of Genetics,Genetic Strains Research Center,Assistant Professor, 系統生物研究センター, 助手 (70280576)
Project Period (FY) 1998 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥12,200,000 (Direct Cost: ¥12,200,000)
Fiscal Year 2001: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 2000: ¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 1999: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 1998: ¥3,400,000 (Direct Cost: ¥3,400,000)
Keywordsキーワード無し / エンハンサートラップ / Ac / Ds / GUS遺伝子 / 転移系統 / Dsトランスポゾン / 形質転換体 / Ds-GUS転移 / 染色体挿入シリーズ / エンハンサースクリーニング
Research Abstract

(1) Generation of transgenic rice lines having single copy (42 lines) or double copies (above 50 lines) of Ds-GUS sequences and 6 lines possesing 35S-Ac transposase genes were generated. Examination for DsGUS transposition frequencies by screening F2 plants derived from cross combinations between four DsGUS and six 35S-Ac TPase lines with PCR method showed average frequency was 6% (675 / 10, 524 plants). (2) The 35S-Ac TPase line which showed higest activity to traspose Ds-GUS element was crossed with 22 Ds-GUS lines. A part ofF2 progenies, 926 out of 3277 F2 plants, exhibited transposition and average frequency of Ds-GUS transposition was calculated 28%. (3) We next screened 540 F2 transposants for GUS expression by staining almost all tissues in different developmental stages ; leaf blade, leaf sheath, auricle, ligule, root, node, rachis, papillae, style, ovary, anther, filament, lodicle, palea, lemma, upper glume, lower glume etc. Between 10 to 20 % of the transposants examined so far revealed to show trapped enahancer-GUS activity in any tissue. (4) To detect original and transposed insertion sites of Ds-GUS elememt, we isolated flanking genome sequences of the insertion positions and sequenced. A part of the flanking sequences (about 100) isolated and sequenced could be mapped through homology searching against chromosome assigned genome sequences. Remaining clones will be soon mapped on the fully aligned genome sequences

Report

(5 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (42 results)

All Other

All Publications (42 results)

  • [Publications] Sentoku, N., sato, Y., Kurata, N., Ito, Y., Kitano, H., Matsuoka, M.: "ARegional expression of the rice KN1-type homeobox gene family during embryo, shoot and flower development"Plant Cell. 11. 1651-1664 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Eiguchi, M., Kurata, N.: "KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice"Genesis. vol.30. 231-238 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Miyoshi, K., Kurata, N., Nonomura, K.I.: "Detection of the pre-meiotic DNA synthesis in pollen mother cells by immunofluorescence technique in rice"Rice Genet. Newsl. 18(in press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harushima, Y., Nakagahra, M., Yano, M., Sasaki, T., Kurata, N.: "A genome-wide survey of reproductive barriers in an intraspecific hybrid"Genesis. 159. 883-892 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ahn, B.O., Miyoshi, K., Itoh, J.I., Nagato, Y., Kurata, N.: "A genetic and physical mapping of the region containing plastochron1, a heterochronic gene, in rice"Theor. Appl. Genet.. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Hirochika, H., Kurata, N.: "Organ specific alternative transcripts of KNOX family class 2 homeobox genes of rice"Gene. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kurata, N., Fukui K.: "'Monograph in genus Oryza.'"Chromosome research in genus Oryza(in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nonomura, K-I and Kurata, N.: "Organization of 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes"Mol. Gen. Genet. 261. 1-10 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "Expression of novel homeobbx series in early embryogenesis in rice"Bidcliim. Biophys. Acta. 1444. 445-450 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ashikawa, L, Kurata, N., Saji, S., Umehara, Y. and Sasaki, T.: "Application of restriction fingerprinting with a rice microsatellite sequence to assembling rice YAC clones."Genome. 42. 330-337 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sentoku, N., Sato, Y., Kurata, N., Kitano, H and Matsuka, M: "Regional expression of the rice KN1-type homeobox gene family during embryo, shoot and flowerDevelopment"Plant Cell. 11. 1651-1664 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Miyoshi, K and Kurata, N.: "Cloning of two cDNAs encoding theHAP3 subunit protein from developing rice seeds."Rice Genet. Newsl. 16. 103-104 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ahn, B. O., Miyoshi, K., Itoh, J-L Nagatp Y and Kurata, N: "Mapping of a rice heterochronic gene PJal regulating the plastochron and the duration of vegetative phase."Rice Genet. Newsl. 16. 36-37 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "Somatic and germinal transposition of a maize transposable element Ds in rice."Rice Genet. Newsl. 17. 110-111 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nonomura, K-I and Kurata, N.: "The centromere composition of multiple repetitive sequences on rice chromosome 5."Chromosoma. 110. 284-291 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "KNOX home box genies are sufficient in maintaining cultured cells in an undifferentiated state in rice."Genesis. 30. 231-238 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harushima, Y, Nakagahra, M., Yano, M., Sasaki, T, and Kurata, N: "A genome-wide survey of reproductive barriers in an infeaspebific hybrid"Genome. 159. 883-892 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Miyoshi, K., Kurata, N. and Nononiura, Kl: "Detection of the pre-meiotic DNA synthesis in pollen mother cells division in the anther and ovule of rice"Rioe Genft Newsl. 18. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nonomura. K.I., Miyoshn K.J Eigucbi, M., Miyapi A Hirochika, H and Kurata, N: "acdl mutant aberrant for archesporial cell division in the anther and ovule of rice."Rice Genet.Newsl.. 18. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harushima, Y., Nakagahara, M., Yano, M., Sasaki, T, and Kurata, N.: "Diverse variation of reproductive barriers in three intraspecific rice crosses"Genetics. 160. 313-322 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ahn, B. O., Miyoshi, K., Itoh, J. L Nagato, Y arid Kurata, N: "A genetic and physica I mapping of the region containing plastochronl, a heterochronic gene, in rice"Thecr, Appl Gent. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kurata, N., Nonomura K-L and Harushima, Y: "Rice genome organization focusing on centromere and genome interaction studies."Biological Briefings. Anals of Botany. 86 ; (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kurata N. and Fukui K: "Chromosome research in geniis Oryza."Monograph in genus Oryza. ' Nanda JS ed Springer,. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Hirochika, H. and Kurata, N.: "Organ specific alternative transcripts of KNOX family classs 2 homeobox genes of rice."Gene. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ito, Y., Eiguchi, M., Kurata, N.: "KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice"Genesis. vol.30. 231-238 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Miyoshi, K., Kurata, N., Nonomura, K.I.: "Detection of the pre-meiotic DNA synthesis in pollen mother cells by immunofluorescence technique in rice"Rice Genet. Newsl. 18(in press). (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Harushima, Y., Nakagahra, M., Yano, M., Sasaki, T, Kurata, N.: "A genome-wide survey of reproductive barriers in an intraspecific hybrid"Genetics.. 159. 883-892 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ahn, B.0., Miyoshi, K., Itoh, J.I.Nagato, Y, Kurata, N.: "A genetic and physica I mapping of the region containing plastochronl, a heterochronic gene, in rice"Theor. Appl. Genet.. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ito, Y., Hirochika, H., Kurata, N.: "Organ specific alternative transcripts of KNOX family classs 2 homeobox genes of rice"Gene,. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kurata N., Fukui K.: "'Monograph in genus Oryza.'"Chromosome research in genus Oryza. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ito,Y.,Eiguchi,M.and Kurata,N.: "Somatic and germinal Transposition of a maize transposable element Ds in rice."Rice Genetics Newsletter. vol.17(in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nonomura,K.I.and Kurata,N.: "The centromere composition of multiple repetitive sequences on rice chromosome 5."Chromosoma. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nonomura, K.I. And Kurata, N: "Organization of 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes"Molecular and General Genetics. 261. (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ito, Y., Eiguchi, M. and Kurata, N.: "Expression of novel homeobox genes in early embryogenesis in rice"Biochim. Biophys. Acta. 1444. 445-450 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ashikawa, I., Kurata, N. et al.: "Application of restriction fingerprinting with a rice microsatellite sequence to assembling rice YAC clones"Genome. 42. 330-337 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sentoku, N. et al.: "Regional expression of the rice KN1-type homeobox gene family during embryo, shoot and flower development"The Plant Cell. 11. 1651-1664 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Miyoshi, K and Kurata, N.: "Cloning of two cDNAs encoding the HAP3 subunit protein from developing rice seeds"Rice Genetics Newsletter. 15(in press). (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.R.Rajyashri,et al.: "Isolation and FISH mapping of Yeast Artificial Chromosomes(YACs)encompassing an allele of the Gm2 gene for gall midge resistance in rice." Theoretical and Applied Genetics. 97. 507-514 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] J.Wu,et al.: "Physical mapping of duplicated genomic regions of two chromosome ends in rice." Genetics. 150. 1595-1603 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] K.I.Nonomura and N.Kurata: "Organization of 1.9-kb repeat unit RCE1 in the centromeric region of rice chromo-somes." Molecular and General Genetics. 261. 1-10 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Ito,et al.: "Expression of novel homeobox genes in early embryogenesis in rice." Biochimica et Biophysica Acta. in press. (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] I.Ashikawa,et al.: "Application of restriction fingerprinting with a rice microsatellite sequence to assem-bling rice YAC clones" Genome. 42(in press). (1999)

    • Related Report
      1998 Annual Research Report

URL: 

Published: 1998-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi