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Rapid identification of races and species-specific pathotypes using DNA-fingerprinting

Research Project

Project/Area Number 10556011
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 植物保護
Research InstitutionKobe University

Principal Investigator

MAYAMA Shigeyuki  Kobe University, Faculty of Agriculture, Professor, 農学部, 教授 (00112251)

Co-Investigator(Kenkyū-buntansha) TOSA Yukio  Kobe University, The Graduate School of Science and Technology, Associate Professor, 自然科学研究科, 助教授 (20172158)
中屋敷 均  神戸大学, 農学部, 助手 (50252804)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥8,700,000 (Direct Cost: ¥8,700,000)
Fiscal Year 1999: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 1998: ¥5,400,000 (Direct Cost: ¥5,400,000)
Keywordsblast fungus / Magnaporthe grisea / race / DNA-fingerprinting
Research Abstract

DNA fingerprinting with miltilocus probes, MAGGY and MGR586, were conducted to investigate the population structure of the rice blast fungus, Magnaporthe grisea in Japan. Analyses of ca. 300 isolates revealed that two discrete lineages exist in the current rice blast population in Japan. They were designated as JL1 and JL2. There two lineages corresponded to two of the five lineages previously detected in collections made before 1960, suggesting that the structure of the rice blast population in Japan had drastically changed during 1960-1976. Rice blast population in Vietnam were also subjected to DNA fingerprinting with MAGGY probe and the pathotype analysis. These analyses revealed that the blast population in the northern region of Vietnam is genetically more diverse than that in the southern region. In both populations no relationships were detected between lineages and races, suggesting that the "lineage exclusion hypothesis" is not applicable to those populations.
DNA fingerprinting experiments were carried out for establishing a system of DNA-diagnosis of six host-specific subgroups of M. grisea ; Oryza isolates, Triticum isolates, Panicum isolates, Setaria isolates, Eleusine isolates, and Digitaria isolates. We propose the following formulas for distinguishing those subgroups.
(1)HindIII+MGR583 : to identify each group
(2)SalI+MAGGY : to identify the Oryza and the Setaria isolates
(3)EcoRV+MGR583 : to identify the Triticum isolates
(4)HindIII+Pot2 : to identify the Digitaria isolates

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (15 results)

All Other

All Publications (15 results)

  • [Publications] Don et al.: "Population structure of the rice blast pathogen in Vietnam"Ann. Phytopathol. Soc. Jpn.. 65. 475-479 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Don et al.: "Population structure of the rice blast fungus in Japan examined by DNA fingerprinting"Ann. Phytopathol. Soc. Jpn.. 65. 15-24 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kusaba et al.: "Natural infection of wild grass species with rice blast fungus suggested by DNA fingerprinting"Ann. Phytopathol. Soc. Jpn.. 64. 125-128 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kusaba et al.: "Genetic Diversity in Pyricularia isolates from various blast revealed by portmorphisms of nuclear ribosomal DNA and -"Ann. Phytopathol. Soc. Jpn.. 65. 588-596 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Urashima et al.: "Molecular analysis of the wheat blast population in Brazil with a homolog of retrotransposon MGR583"Ann. Phytopathol. Soc. Jpn.. 65. 429-436 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Don,L.D., Y.Tosa, H.Nakayashiki and S.Mayama: "Population structure of the rice blast pathogen in Vietnam"Ann. Phytopathol. Soc. Jpn.. 65. 475-479 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Don,L.D., M.Kusaba, A.S.Urashima, Y.Tosa, H.Nakayashiki and S.Mayama: "Population structure of the rice blast fungus in Japan examined by DNA fingerprinting"Ann. Phytopathol. Soc. Jpn.. 65. 15-24 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kusaba,M., L.D.Don, A.S.Urashima, Y.Eto, Y.Tosa, H.Nakayashiki, M.Yamamoto, and S.Mayama: "Natural infection of wild grass species with rice blast fungus suggested by DNA fingerprinting"Ann. Phytopashol. Soc. Jpn.. 64. 125-128 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kusaba,M., Y.Eto, L.D.Don, N.Nishimoto, Y.Tosa, H.Nakayashiki and S.Mayama: "Genetic diversity in Pyricularia isolates from various hosts revealed by polymorphisms of nuclear ribosomal DNA and the distribution of the MAGGY retrotransposon"Ann. Phytopathol. Soc. Jpn.. 65. 588-596 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Urashima,A.S., Y.Hashimoto, L.D.Don, M.Kusaba, Y.Tosa, H.Nakayashiki and S.Mayama: "Molecular analysis of the wheat blast population in Brazil with a homolog of retrotransposon MGR583"Ann. Phytopathol. Soc. Jpn.. 65. 429-436 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Don et al.: "Population structure of the rice blast pathogen in Vietnam"Ann.Phytopathol.Soc.Jpn.. 65. 475-479 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Don et al.: "Population structure of the rice blast funcgen in Japan examined by DNA fingerprinting"Ann.Phytopathol.Soc.Jpn.. 65. 15-24 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kusaba et al.: "Genetic diversity in Pyricolaria isolates from various hosts revealed by polymorphism of nuclear ribosomal-"Ann.Phytopathol.Soc.Jpn.. 65. 588-596 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Urashima et al.: "Molecular analysis of the wheat blast population in Bra2'l with a homelog of retrotranspos on MGR583"Ann.Pluytopathol.Soc.Jpn.. 65. 429-436 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] L.D.DON: "Population structure of the rice blast fungus in Japan examined by DNA fingerprinting" 日本植物病理学会報. 65(in press). (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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