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Development of Resource-saving Process for the Production of Useful Amino Acids Using the Metabolisms and Enzymes Specific to C1 Microorganisms

Research Project

Project/Area Number 10556021
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section展開研究
Research Field 応用微生物学・応用生物化学
Research InstitutionTottori University

Principal Investigator

IZUMI Yioshikazu  Tottori University, Faculty of Engineearing, Professor, 工学部, 教授 (40026555)

Co-Investigator(Kenkyū-buntansha) YOSHIDA Toyokazu  Gifu University, Faculty of Engineearing, Associate Professor, 工学部, 助教授 (90220657)
OHSHIRO Takashi  Tottori University, Faculty of Engineearing, Research Associate, 工学部, 助手 (00233106)
下西 学  国立循環器病センター研究所, 薬理部, 研究員 (70300978)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥13,900,000 (Direct Cost: ¥13,900,000)
Fiscal Year 2000: ¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 1999: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 1998: ¥5,400,000 (Direct Cost: ¥5,400,000)
KeywordsC1 microorganism / serine pathway / isocitrate lyase / serine-glyoxylate aminotransferase / hydroxypyruvate reductase / 速度論的酵素の特性分析 / serin-glyoxylate aminotransfdeseDszA / 有用アミノ酸生産 / ヒドロキシピルビン酸レグクターゼ / 結晶化 / X線構造解析 / HPR遺伝子 / Hyphomicrobium methylovorum / メチロトローフ / メタノール資化性細菌 / L-セリン / メタノール脱水素酵素 / mxaF遺伝子
Research Abstract

The research results of this study are summarized as follows.
(1) Using methanol as a carbon source and energy source, which is promissing and desirable for the microbial industries, we developd a resource-saving process for the production of useful amino acids by the C1 microorganisms whichh we have already isolated.
(2) Crystallization of novel enzymes specific for C1 microorganisms and X-ray crystallographic analyses : As for hydroxypyruvate reductase (HPR), a holo-enzyme which had the coenzyme NAD was crystallized (bipyramidal form) according to the crystallization procedures of the apo-enzyme which we have already established. As a result of X-ray crystallography of the holo-enzyme crystals. NAD was found to be bound to the site of the enzyme as we expected. Moreover, on the contrary to our expectation that there must be a change in angle of the cleft between the catalytic site and substrate binding site of the apo-enzyme, the structure of the holo-enzyme was unchaged as compared to that of the apo-enzyme. We succeeded in obtaining crystallization of the ternary complex of the enzyme (substrate-alalog- NAD and enzyme), so X-ray crystallographic analyses are now underway. As for the SGAT, we have obtained crystals of rhombus plate form by using the hanging drop method with Crystal Screen I.
(3) Kinetic studies of pa novel enzyme, SGAT, specific for C1 microorganisms : As for SGAT, kinetic studies were carried out by the stopped-flow method and by use of the isotope-labelled substrates, and revealed that the enzyme catalyzed the reaction through a different reaction mechanism form other known aminotransfereases.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report

Research Products

(26 results)

All Other

All Publications (26 results)

  • [Publications] W.Karsten,T.Ohshiro,Y.Izumi,and P.F.Cook: "Initial velocity, spectral and pH studies of the serine-glyoxylate aminotransferase from Hyphomicrobium methylovorum"Arch.Biochem.Biophys.. 67(印刷中). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Matsubara,T.Ohshiro,Y.Nishina,and Y.Izumi: "Purification, characterization, and overexpression of flavin reductase involved in dibenzothiophene desulfurization by Rhodococcus erythropolis D-1"Appl.Environ.Microbiol.. 67. 1179-1184 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Ohshiro and Y.Izumi: "Purification, characterization and crystallization of enzymes for dibenzothiophene desulfurization"Bioseparation. 9. 185-188 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Ishii,T.Ohshiro,Y.Aol,M.Suzuki,and Y.Izumi: "Identification of the gene encoding a NAD (P) H flavin reductase coupling with dibenzothiophene (DBT)-desulfurizing enzymes from the DBT-nondesulfurizing bacterium Paenibacillus polymyxa A-1"J.Biosci.Bioeng.. 90. 220-222 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Furuya,H.Sawada,T.Hirahara,K.Ito,T.Ohshiro,Y.Izumi: "A Novel enzyme, L-tryptophan oxidase, from a basidiomycete, Coprinus sp.SF-1 : Purification and characterization"Biosci.Biotechnol.Biochem.. 64. 1486-1493 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 和泉好計,大城隆: "微生物による石油の脱硫-実用化プロセスに有用な代謝系と酵素-"酵素工学ニュース. 44. 9-14 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] W.Karsten, T.Ohshiro, Y.Izumi and P.F.Cook: "Initial velocity, spectral and pH studies of the serine-glyoxylate aminotransferase from Hyphomicrobium methylovorum"Arch. Biochem. Biophys.. (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Matsubara, T.Ohshiro, Y.Nishina, and Y.Izumi: "Purification, characterization, and overexpression of flavin reductase involved in dibenzothiophene desulfurization by Rhodococcus erythropolis D-1"Appl. Environ. Microbiol.. 67. 1179-1184 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] M.N.Isupov, A.R.Dalby, A.A.Brindley.Y.Izumi, T.Tanabe, G.N.Murshudov, and J.A.Littlechild: "Crystal structure of dodecameric vanadium-dependent bromoperoxidase from the red algae Corallina officinalis"J.Mol. Biol.. 299. 1035-1049 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Ohshiro and Y.Izumi: "Purification, characterization and crystallization of enzymes for dibenzothiophene desulfurizatio"Bioseparation.. 9. 185-188 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Furuya, H.Sawada, T.Hirahara, K.Ito, T.Ohshiro, and Y.Izumi: "A novel enzyme, Ltryptophan oxidase, from a basidiomycete, Coprinus sp. SF-1 : Purification and characterization"Bioscl. Biotechnol. Biochem.. 64. 1486-1493 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Ishii, T.Ohshiro, Y.Aoi, M.Suzuki, and Y.Izumi: "Identification of the gene encoding a NAD(P)H flavin oxidoreductase coupling with dibenzothiophene (DBT)-desulfurizing enzymes from the DBT-nondesulfurizing bacterium Paenibacillus polymyxa A-1."J.Biosci.Bioeng.. 90. 220-222 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Ohshiro, T.Kojima, K.Torii, H.Kawasoe, and Y.Izumi: "Purification and characterization of dibenzothiophene (DBT) sulfone monooxygenase, an enzyme involved in DBT desulfurization, from Rhodococcus erythropolis D-1"J.Biosci.Bioeng.. 88. 610-616 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] W.Karsten,T.Ohshiro,Y.Izumi,and P.F.Cook: "Initial veloccity, spectrul and pH studies of the serine-glyocxylate aminotransferase from Hyphomicroblum methylovorum"Arch.Biochem.Biophys.. 67(印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Matsubara,T.Ohshiro,Y.Nishina,and Y.Izumi: "Purification, characterization, and overexpression of flavin reductase involved in dibenzothiophene desulfurization by Rhodococcus erythropolis D-1"Appl.Environ.Microbiol.. 67. 1179-1184 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Ohshiro and Y.Izumi: "Purification, characterization and crystallization of enzymes for dibenzothiophene desulfurization"Bioseparation. 9. 185-188 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Ishii,T.Ohshiro,Y.Aoi M.Suzuki,and Y.Izumi: "Identification of the gene encoding a NAD(P)H navin reductase coupling with aibenzothrophene (DBT)-desulfurizing enzymes from the DBT-nondesulfurizing bacterium Paenibacillus polymyxa A-1"J.Biosci.Bioeng.. 90. 220-222 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Furuya,H.Sawada,T.Hirahara,K.Ito,T.Ohshiro,Y.Izumi: "A Novel enzyme, L-tryptophan oxidase, from a basidiomycete, Coprinus sp.SF-1 : Purification and characterization"Biosci.Biotechnol.Biochem.. 64. 1486-1493 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 和泉好計,大城隆: "微生物による石油の脱硫-実用化プロセスに有用な代謝系と酵素-"酵素工学ニュース. 44. 9-14 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Occurence of bromoperoxidase in the marine green macro-alga,Ulvella lens,and emission of volatile brominated methan by theenzyme"Phytochemistry. 52,12. 1211-1215 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Purification and characterization of dibenzothiophene(DBT)sulfone monooxigenase involving in DBT desulfurization of Rhodococcus erythropolis"Journal of Bioscience and Biotechnology. 88,12. 610-616 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Characterization of the biotin synthase reaction from Bacillus sphaericus using the photoreduced deazaflavin sgstem" Journal of Ferrmentation and Bioengineering. 86,5. 446-450 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Cloning and expression of the gene for a vanadium-dependent bromoperoxidase from a marine macro-alga, Corallina pilulifera" FEBS Letters. 428. 105-110 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 和泉好計: "Streptomyces albulusのS-(2-アミノエチル)-L-システイン耐性変異株によるε-ポリ-L-ジン生産性の改良" 生物工学会誌. 76,12. 487-493 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Enantioselective sulfoxidation catalyzed by vanadium haloperoxidases" Inorgnic Chemistry. 37,26. 6780-6784 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yoshikazu Izumi: "Microbial desulfurization of organic sulfur compounds in petroleum" Bioscience,Biotechnology,and Biochemistry. 63,1. 1-9 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-03-31   Modified: 2016-04-21  

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