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Development of medaka models for comprehensive assessment of environmental factors

Research Project

Project/Area Number 10558089
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section展開研究
Research Field 環境影響評価(含放射線生物学)
Research InstitutionUniversity of Tokyo

Principal Investigator

NONAKA Masaru  University of Tokyo, Graduate School of Science, Professor, 大学院・理学系研究科, 教授 (40115259)

Co-Investigator(Kenkyū-buntansha) SHIGEOKA Tadayoshi  Mitsubishi Chemical Safety Institute LTD.Research Head, 安全科学研究所, 部長(研究職)
KIMURA Hiroshi  Shiga University of Medical Sciences, Professor, 医学部, 教授 (00110560)
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥12,700,000 (Direct Cost: ¥12,700,000)
Fiscal Year 2000: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 1999: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1998: ¥5,300,000 (Direct Cost: ¥5,300,000)
KeywordsMedaka / MHC / Environmental assessment / Genome structure / DNA ligase / Toxicity test / Complement / Innate immunity / RNAi / 免疫系 / リガーゼIV / 補体 / 化学物質
Research Abstract

Nonaka : Medaka cDNA and genomic DNA clones possibly involved in adaptive and innate immunity were isolated and characterized. The medaka major histocompatibility complex (MHC) genes were dispersed on several chromosomes in contrast to the centralized mammalian MHC.However, the class IA genes and the some genes involved in class I antigen presentation were linked, possibly representing the core region of the vertebrate MHC.Several overlapping BAC clones covering the medaka MHC class I region were isolated, and the entire nucleotide sequence of one BAC clone wa determined. This BAC clone contained an about 200 kb insert, and 16 genes were identified on this clone. Comparison of the order and orientation of these genes with those of fugu and zebrafish indicated the extensive gene rearrangement even among teleost species. In addition, the complement genes, such as C3, C4 and Bf, involved in innate immunity were isolated. The medaka C3 genes were found to be amplified into about 10 copies, suggesting that innate immunity plays an essential role in body defense of telesots, whose adaptive immunity seems to be ineffective compared to mammals.
Kimura : Medaka DNA ligases involved in repair DNA damages and DRP genes involved in signal transduction in neuronal cells were analyzed. The five DRP genes isolated from medaka showed one-to-one correspondence to the human genes, indicating the phylogenetic conservation of these genes throughout the vertebrate evolution. Availability of the RNAi method to medaka was also assessed using the GFP gene.
Shigeoka : Efficient assay system for chemical toxicity was established. In addition, culture cell line were established from medaka fibroblasts, enabling toxicity test at the cell level.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Endo,Y.: "Two lineages of mannose binding lectin-associated serine protease (MASP) in vertebrate"J.Immunol.. 161. 4924-4930 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kitamura,K.: "Characterization of the human dihydro-pyrimidinase-related protein 2(DRP-2) gene"DNA Res.. 6. 291-297 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kuroda,N.: "Molecular cloning and linkage analysis of complement C3 and C4 genes of the Japanese medaka fish."Immunogenetics. 51. 117-128 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakao,M.: "Molecular cloning and protein analysis of divergent forms of the complement component C3 from a bony fish, the common carp (Cyprinus carpio)"Eur.J.Immunol.. 30. 858-866 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nonaka,M.: "Evolution of the complement system"Curr.Opin.Immunol.. 13. 69-73 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Terado,T.: "Occurrence of structural specialization of the serine protease domain of complement factor B at the emergence of jawed vertebrates"Immunogenetics. (In press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Endo, Y., Takahashi, M., Nakao, M., Saiga, H., Sekine, H., Matsushita, M., Nonaka M.& Fujita, T.: "Two lineages of mannose binding lectin-associated serine protease (MASP) in vertebrate."J.Immunol.. 161. 4924-4930 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kitamura, K., Takayama, M., Hamajima, N., Nakanishi, M., Sasaki, M., Endo, Y., Takemoto, T., Kimura, H., Iwaki, M.& Nonaka, M.: "Characterization of the human dihydro-pyrimidinase-related protein 2 (DRP-2) gene."DNA Res.. 6. 291-297 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kuroda, N., Naruse, K., Shima, A., Nonaka, M., Sasaki, M., & Nonaka, M.: "Molecular cloning and linkage analysis of complement C3 and C4 genes of the Japanese medaka fish."Immunogenetics. 51. 117-128 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakao, M., Mutsuro, J., Obo, R., Fujiki, K., Nonaka, M., & Yano, T.: "Molecular cloning and protein analysis of divergent forms of the complement component C3 from a bony fish, the common carp (Cyprinus carpio) : The presence of variants lacking the catalytic histidine."Eur.J.Immunol.. 30. 858-866 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nonaka, M.: "Evolution of the complement system."Curr.Opin.Immunol.. 13. 69-73 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Terado, T., Smith, S.L., Nakanishi, T., Nonaka, M.I., Kimura, H., & Nonaka, M.: "Occurrence of structural specialization of the serine protease domain of complement factor B at the emergence of jawed vertebrates and adaptive immunity."Immunogenetics. (In press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakao,M.: "Molecular cloning and protein analysis of divergent forms of the complement component C3 from a bony fish, the common carp (Cyprinus carpio)"Eur.J.Immunol.. 30. 858-866 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nonaka,M.: "Evolution of the complement system"Curr.Opin.Immunol.. 13. 69-73 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Takemoto,T.: "Cloning and characterization of the Caenorhabditis elegans CeCRMP/DHP-1and-2;Common ancestors of CRMP and Dihydropyrimidinase?"Gene. 261. 259-267 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Miyazawa,S.: "Cloning and characterization of integrin a subunits from the solitary ascidian,Halocynthia roretzi"J.Immunol.. 166. 1710-1715 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nonaka,M.I.: "Novel androgen-dependent promoters direct expression of the C4 binding protein a-chain gene in epididymis."J.Immunol.. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Terado,T.: "Occurrence of structural specialization of the serine protease domain ofcomplement factor B at the emergence of jawed vertebrates"Immunogenetics. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nonaka, M.: "Opsonic complement component C3 in the solitary ascidian, Halocynthia roretzi"J. Immunol.. 162. 387-391 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kitamura, K.: "Characterization of the human dihydroprymidinase-related protein 2 (DRP-2) gene"DNA Res.. 6. 291-297 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kuroda, N.: "Molecular cloning and linkage analysis of complement C3 and C4 genes of the Japanese medaka fish"Immunogenetics. 51. 117-128 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nonaka, M: "Trans-species polymorphism of the MHC-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus"Immunogenetics. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Naruse, K.: "A detailed linkage map of medaka, Oryzias latipes : Comparative genomics and genome evolution"Genetics. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Salter-Cid,L.: "Expression of MHC class Ia and class Ib during ontogeny : high expression in epithelia and co-regulation of class Ia and lmp7 genes" J.Immunol.160. 2853-2861 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nakao,M.: "Two diverged complement factor B/C2-like cDNA sequences from a teleost,carp (Cyprinus carpio)" J.Immunol.161. 4811-4818 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Endo,Y.: "Two lineages of mannose binding lectin-associated serine protease (MASP) in vertebrate" J.Immunol.161. 4924-4930 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nonaka,M.: "Molecular genetics of the complement C3 convertases in lower vertebrates" Immunol.Rev.166. 59-65 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nonaka,M.: "Opsonic complement component C3 in the solitary ascidian,Halocynthia roretzi" J.Immunol.162. 387-391 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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