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Mathematical Research on Most-Parsimonious Reconstruction Problems in Phylogeny

Research Project

Project/Area Number 10640136
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field General mathematics (including Probability theory/Statistical mathematics)
Research InstitutionTokai University Junior College

Principal Investigator

NARUSHIMA Hiroshi  Tokai University Junior College, Professor, 教授 (90056200)

Co-Investigator(Kenkyū-buntansha) HANAZAWA Masazumi  Tokai University, Science, Professor, 理学部, 教授 (50008851)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 1999: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1998: ¥1,700,000 (Direct Cost: ¥1,700,000)
KeywordsPhylogeny / Evolutionary tree / ancestral character-state / Most-parsimonious reconstruction / ACCTRAN reconstruction / MPR-poset / complete distributivity of MPR-poset / MPR-problems on unicycle graphs / σ(r)-version MPR-poset
Research Abstract

A mathematical theory for the subject on ancestral character-state reconstructions under the maximum parsimony in phylogeny has been developing. Recently, a clear method for the subject under a given el-tree has been presented by Hanazawa and Narushima (1995, 1997).
In the framework based on the method, Narushima and Misheva have refined and generalized the ACCTRAN reconstruction originated with Farris (1970) and defined more explicitly by Swofford and Maddison (1987), which is considered a more meaningful and useful one of the many possible most-parsimonious reconstructions (abbreviated to MPRs). Then Narushima and Misheva have showed the subtree-complete maximum-parsimonity of ACCTRAN reconstructions, and Narushima has showed another remarkable property, that is, the extremal property, of ACCTRAN reconstructions.
Furthermore, Miyakawa and Narushima have mathematically defined and generalized the MPR-poset of all MPRs, which is introduced by Minaka (1993), and then have showed the following theorems on MPR-posets : 1) an usual MPR-poset is a complete distributive lattice, 2) a σ (r)-version MPR-poset is a lower-complete semilattice, 3) any interval poset of a σ (r)-version MPR-poset is a complete distributive lattice. And also, some properties of the distortion index on all MPRs have been clarified with the ACCTRAN reconstruction.
On the other hand, Hanazawa and Narushima have given an efficient algorithm for MPR-problems on unicycle graphs.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] 成嶋弘: "祖先形質の最節約復元順序集合について-On MPR-posets in phylogeny-"数理解析研究所講究録. 1041. 44-49 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 宮川幹平、成嶋弘: "最節約復元順序集合の極値問題について"数理解析研究所講究録. 1041. 50-55 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 花沢正純、成嶋弘: "非樹形グラフにおける部分付値の最軽拡張問題I"東海大学理学部紀要. 34. 89-104 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hiroshi NARUSHIMA: "On Extremal Properties of ACCTRAN Reconstructions in Phylogeny"The Proc. of the 1st Japanese-Hungarian Symposium on Discrete Mathematics and Its Applications. 127-132 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 宮川幹平、成嶋弘: "On Extremal Problems of MPR-posets II"数理解析研究所講究録. 1093. 57-61 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Masazumi HANAZAWA Hiroshi NARUSHIMA: "The lightest totalization of an endnode labelling of a non-tree graph II"Proc. Sch. Sci., Tokai Univ. (東海大学理学部紀要). 35. 7-19 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Narushima, H.: "On MPR-posets in phylogeny"RIMS Koukyuuroku. 1041. 44-49 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyakawa, K., Narushima, H.: "On extremal problems of MPR-posets"RIMS Koukyuuroku. 1041. 50-55 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hanazawa, M., Narushima, H.: "The lightest totalization of an endnode labelling of a non-tree graph"Proc. Sch. Sci. Tokai Univ.. 34. 89-104 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Narushima, H.: "On Extremal Properties of ACCTRAN Reconstructions in Phylogeny"The Proc. Of the 1st Japanese-Hungarian Symposium on Discrete Mathematics and Its Applications. 127-132 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Miyakawa, K., Narushima, H.: "On extremal problems of MPR-posets II"RIMS Koukyuuroku. 1093. 57-61 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Hanazawa, M., Narushima, H.: "The lightest totalization of an endnode labelling of a non-tree graph II"Proc. Sch. Sci. Tokai Univ.. 35. 7-19 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 成嶋弘: "祖先形質の最節約復元順序集合について-on MPR-posets in phylogeny-"数理解析研究所講究録. 1041. 44-49 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] 宮川幹平、成嶋弘: "最節約復元順序集合の極値問題について"数理解析研究所講究録. 1041. 50-55 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] 花沢正純、成嶋弘: "非樹形グラフにおける部分付値の最軽拡張問題I"東海大学理学部紀要. 34. 89-104 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hiroshi NARUSHIMA: "On Extremal Properties of ACCTRAN Reconstructions in Phylogeny"The Proc.of the 1st Japanese-Hungarian Symposium on Discrete Mathematics and Its Applications. 127-132 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 宮川幹平、成嶋弘: "On Extremal Problems of MPR-posets II"数理解析研究所講究録. 1093. 57-61 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Masazumi HANAZAWA,Hiroshi NARUSHIMA: "The lightest totalization of an endnode labelling of a non-tree graph II"Proc.Sch.Sci.,Tokai Univ.(東海大学理学部紀要). 35. 7-19 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] 成嶋 弘: "祖先形質の最節約復元順序集合について-on MPR-poset in phylogeny-" 数理解析研究所講究録. 1041. 44-49 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 宮川 幹平、成嶋 弘: "最節約復元順序集合の極値問題について" 数理解析研究所講究録. 1041. 50-55 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 花沢 正純、成嶋 弘: "非樹形グラフにおける部分付値の最軽拡張問題I" 東海大学理学部紀要. 34. 89-104 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Hiroshi NARUSHIMA: "On Extremal Properties of ACCTRAN Reconstructions in Phylogeny" The Proc.of the 1st Japanese-Hungarian Symposium on Discrete Mathematics and Its Applications. 127-132 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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