• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

STRUCTURAL ANALYSIS OF RS447 MEGASATELLITE DNA.

Research Project

Project/Area Number 10640602
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionRIKEN (1999)
Tokai University (1998)

Principal Investigator

GONDO Yoichi  RIKEN, Mutation Resource Exploration Team, Team Leader (Research Position), マウス変異研究チーム, チームリーダー(研究職) (40225678)

Co-Investigator(Kenkyū-buntansha) HADANO Shinji  Tokai University, The Institute of Medical Sciences, Assistant Professor, 総合医学研究所, 助手 (60281375)
MASUYA Hiroshi  RIKEN, Mutation Resource Exploration Team, Research Member (Research Position), マウス変異研究チーム, 研究員 (40321814)
INOUE Maki  RIKEN, Mutation Resource Exploration Team, Research Associate (Research Position), マウス変異研究チーム, リサーチソシエイト(研究職) (90321728)
SAITOH Yasushi  Tohoku University, Department of Agriculture, Associate Professor, 農学部, 助教授 (70287100)
池田 穰衛  東海大学, 総合医学研究所, 教授 (50266467)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1999: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1998: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordsgenome / repetitive sequence / satellite DNA / hypervariability / human genome / tandem repeat / evolution / gene conversion / 超可変性,ゲノム / メガサテライトDNA / 高等動物 / げっ歯類 / ゲノム構造 / 遺伝的不安定性 / 分子進化
Research Abstract

We proposed the concept of "megasatellite DNA" and it has been widely accepted. The RS447 megasatellite DNA was firstly identified on human 4p15. The unit size of 4746bp is tandemly repeated about 20 to 100 times. The copy number is highly polymorphic and indeed hypervariable. By pedigree analysis, 6 out of 60 parent-to-offspring transmission exhibited copy-number changes. This novel repetitive sequence is, however, neither junk nor selfish DNA. There is an ORF of 1590 bp that codes for an active deubiquitinase. The RS447 sequence is conserved in mammals. The RS447 homologs have been cloned from the Chinese hamster and rat. The tandemly repeated structure is well conserved in all the tested mammalian specied except the mouse. Thus, in order to elucidate the structural function and its evolution, the comparative studies of the RS447 homologs among human and those rodents has been conducted. Sequencing of independent copies RS447 of the human, Chinese hamster and rat indicated more than 99% identities within the species but much lower between the species although there are significantly high homologies. It implies the RS447 tandem repeat is homogenized within species by some mechanism(s) like concerted evolution. At this moment, it is an enigma why RS447 homologs is dispersed distributed in the mouse genome. We have constructed 12 independent transgenic mouse strains which tandemly carry the human RS447 as transgene. These transgenic mice should provide a clue to understand the RS447 structure and evolution in the mouse.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] S. Nakamura 他: "Radiation-induced mutation in the spleen and brain of lacZ transgenic mouse"Int. J. Radiation Biol.. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yamamoto 他: "Identification of two distimct transgenic for the neuronal apoptosis inhibitory protein (NAIP) gene"Biochem. Biophys. Res. Commun.. 264. 998-1006 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Muto 他: "Inhibition of henzo[a]pyrene-induced mutagenesis by (-)-Cpigallocatechin gallate in the lung of rpsL transgenic mice"Carcinognesis. 20. 421-424 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Gondo 他: "Human Megasatellite DNA RS447 : copy-number polymorphisms and interspecies conservation"Genomics. 54. 39-49 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] A. Yamada 他: "In vivo detection of mutations induced by aflatoxin B1 using human CYP3A7/HITEC hybrid mice"Biochem. Biophys. Res. Commun.. 250. 150-153 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Saitoh 他: "Human Ra447 megasatellite repeat encodes a novel deubiquitinating enzyme with factional promoter"Am J. human Genetics. 63. A191 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.shiroishi 他: "Mouse Intiatives : advanced Functional Genomics"The Jakson Laboratory. 1 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoshiyuki Shinoyama, Yoichi Gondo, Kazuki Nakao, Motoya Katsuki: "Different mutant frequencies and spectra among organs by N-methyl-N-nitrosourea in rpsL (strA) transgenic mice"Jpn. J. Cancer Res.. in press. (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Nakamura, H.Ikehaga, J.Komura, Y.Hosoi, H.Inoue, Y.Gondo, K.Yamamoto, Y.Ichimasa, T.Ono: "Radiation-induced mutation in the spleen and brain of lacZ transgenic mouse."Int. J. Radiation Biol.. in press. (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Sunahara, K.Nakamura, K.Nakao, Y.Gondo, Y.Nagata, M.Katsuki: "The oocyte-specific methylated region of the U2afbp-rs/U2af1-rs1 gene is dispensable for its imprinted methylation."Biochem. Biophys. Res. Commun.. 268. 590-595 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] T.Shiroishi, S.Wakana, T.Koide, H.Yonekawa, Y.Yamazaki, Y.Gondo, T.Noda, K.Moriwaki: "Functional mouse genomics based on polymorphisms of asian wild mice""Mouse Initiatives: Advanced Functional Genomics." total page number 1, The Jackson Laboratory, Bar Harbor, ME USA. (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kenji Yamamoto, Harumi Sakai, Shinji Hadano, Yoichi Gondo, Joh-E Ikeda: "Identification of two distinct transcripts for the neuronal apoptosis inhibitory protein (NAIP) gene."Biochem. Biophys. Res. Commun.. 264. 998-1006 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Muto, T.Yokoi, Y. Gondo, M.Katsuki, Y.Shinoyama, K.Fujita, T.Kamataki: "Inhibition of benzo(a)pyrene-induced mutagenesis by (-)-epigallocatechin gallate in the lung of rpsL transgenic mice"Carcinogenesis. 20. 421-424 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yoichi Gondo, Takeya Okada, Noriko Matsuyama, Yasushi Saitoh, Yoshiko Yanagisawa, Joh-E Ikeda: "Human megasatellite DNA RS447: copy-number polymorphisms and interspecies conservation"Genomics. 54. 39-49 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ayako Yamada, Kenichi Fujita, Takeshi Yokoi, Shigeharu Muto, A. Suzuki, Yoichi Gondo, Motoya Katsuki, Tetsuya Kamataki: "In vivo detection of mutations induced by aflatoxin B1 using human CYP3A7/HITEC hybrid mice"Biochem. Biophys. Res. Commun.. 250. 150-153 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y.Saitoh, T.Okada, N.Miyamoto, Y.Gondo, J.E.Ikeda: "Human RS447 megasatellite repeat encodes a novel deubiquintinating enzyme with functional promoter"Am. J. Human Genetics. 63. A191 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S.Nakamura他: "Radiation-induced mutation in the spleen and brain of lacZ transgenic mouse"Int.J.Radiation Biol.. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] K.Yamamoto他: "Identification of two distinct transcripts for the neuronal apoptosis inhibitory protein (NAIP) gene"Biochem.Biophys.Res.Commun.. 264. 998-1006 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Muto他: "Inhibition of benzo[a]pyrene-induced mutagenesis by (-)-epigallocatechin gallate in the lung of rpsL transgenic mice"Carcinogenesis. 20. 421-424 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Gondo他: "Human Megasatellite DNA RS447 : copy-number polymorphisms and interspecies conservation"Genomics. 54. 39-49 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] A.Yamada他: "In vivo detection of mutations induced by aflatoxin B1 using human CYP3A7/HITEC hybrid mice"Biochem.Biophys.Res.Commun.. 250. 150-153 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Saitoh他: "Human RS447 megasatellite repeat encodes a novel deubiguitinating enzyme with functional promoter"Am.J.Human Genetics. 63. A191 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Shiroishi他: "Mouse Initiatives : Advanced Functional Genomics"The Jackson Laboratory. 1 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Gondo et al.: "Human Megasatellite DNA RS447:copy-number polymorphisms and interspecies conservation" Genomics. 54. 39-49 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] A.Yamada et al.: "In vivo detection of mutations by aflatoxin Bl using human CYP3A7/HITEC hybrid mouse" Biochem.Biophys.Res.Commun.250. 150-153 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] T.Nakayama et al.: "Post-transcriptional processing and subcellular localization of neuronal apoptosis inhibitory protein(NAIP)" Am.J.Human Genetics. 63. 1070 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Saitoh et al.: "Human RS447 megasatellite repeat encodes a novel deubiguitinating enzyme with functional promoter" Am.J.Human Genetics. 63. 1091 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Gondo et al.: "Hypervariable tandemly-repeated megasatellite DNA,RS447,in human inheritance" J.Human Genetics. 43. 33 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Y.Saitoh et al.: "RS447 megasatellite tandemrepetitive sequence in human diromosome 4p15 encodes a novel deubiquitinating enzyme" J.Human Genetics. 43. 34 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 中江太治編: "生物学と医学をつなぐ分子細胞生物学" 丸善株式会社, 302 (1998)

    • Related Report
      1998 Annual Research Report

URL: 

Published: 1998-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi