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Genomic analysis in oral squamous cell carcinoma detected by restriction landmark genomic scanning

Research Project

Project/Area Number 10671899
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Surgical dentistry
Research InstitutionNara Medical University

Principal Investigator

SUGIMURA Masahito  Nara Medical University, Department of Oral and Maxillofacial Surgery, Professor, 医学部, 教授 (20028749)

Co-Investigator(Kenkyū-buntansha) KONISHI Noboru  Nara Medical University, Second Department of Pathology, Associate Prof., 医学部, 助教授 (20145832)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1999: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1998: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsOral / Squamous cell carcinoma / Genome / RLGS / DNA
Research Abstract

Although a considerable amount of cytogenetic and molecular data on oral squamous cell carcinoma (OSCC) has accumulated over the last few years, the picture is still incomplete in terms of how genetic alterations are involved in tumor initiations and progression. We, therefore, examined genetic abnormalities in OSCC using restriction landmark genomic scanning (RLGS), a method of two-dimensional gel analysis allowing detection of amplifications and other aberrations in genomic DNA. At first, DNA extracted from each of four oral carcinoma cell lines (Ca9-22, HO-1-u-1, HSC-2, KB) was examined. Isolated cell line and normal oral epithial DNAs were sequentially cleaved with specific restriction enzymes, radiolabelled and separated in two-dimensional gel electrophoresis. Thirteen distinct fragments were commonly amplified in the oral cancer cell lines, six of which were evident in all samples. Secondly, eleven cases of OSCC were also examined in the same manner. Five fragment/spots were found and amplified in at least 64% (7/11) (chromosomenos.4,9-12 or 22) of carcinomas, with one of these sports amplified in 100% (chromosome no.4) of tumor samples. In addition, six other spots were frequently reduced in at least 55% (chromosome nos.15 or 9-12) of tumor tissues. Then, the question of whether the DNA alterations involve not only genetic but also epigenetic change was examined using cell lines-Ca9-22, HO-1-u1, HSC-2 and KB-and treatment with a demethylating agent, 5-aza-2'-deoxycytidine (5-AzaCDR). Intensities of two of the reduced sports were amplified in the cell lines by the 5-AzaCDR treatment, showing that they were due to altered DNA methylation. The current studies provide clear evidence that epigenetic changes, like the methylation are related to oral carcinogenesis.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (5 results)

All Other

All Publications (5 results)

  • [Publications] Yamamoto K., Konishi, N., Sugimura, M. et. al.: "Geneomic alterations in oral squamous cell carcinoma cell lines detected by two-dimensional gel analysis"Oral Onclo.. 34. 508-512 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yamamoto, Ke., Konishi, N., Sugimura, M. et. al.: "DNA alterations in human oral squamous cell carcinomas detected by restriction landmark genomic scanning"J. Oral. Pathol. Med.. 28. 102-106 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yamamoto,K.,Konishi,N.,Sugimura,M.et.al.: "Genomic alterations in oral squamous cell carcinoma cell lines detected by two-dimensional gel analysis"Oral Oncol.. 34. 508-512 (1998)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamamoto,K.,Konishi,N.,Sugimura,M.et.al.: "DNA alterations in human oral squamous cell carcinomas detected by restriction landmark genomic scanning"J.Oral.Pathol.Med.. 28. 102-106 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamamoto,K.,Konishi,N.,Sugimura,M.et al: "Genomic alterations in oral souamous cell carcinoma cell lines detected by two-dimensional gel analysis" Oral Oncology. 34. 508-512 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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