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Three-dimensional structure of vitamin D ligand-receptor complex and its intracellular interaction

Research Project

Project/Area Number 10671985
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemical pharmacy
Research InstitutionTokyo Medical and Dental University

Principal Investigator

SHIMIZU Masato  Tokyo Medical and Dental University, Institute of Biomaterials and Bioengineering, Associate Professor, 生体材料工学研究所, 助教授 (50126231)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Keiko  Tokyo Medical and Dental University, Institute of Biomaterials and Bioengineering, Instructor, 生体材料工学研究所, 助手 (90147017)
YAMADA Sachiko  Tokyo Medical and Dental University, Institute of Biomaterials and Bioengineering, Professor, 生体材料工学研究所, 教授 (10014078)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1999: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 1998: ¥1,000,000 (Direct Cost: ¥1,000,000)
KeywordsActive vitamin D / fluorovitamin D analog / Fluorescent-labeled vitamin D analog / Vitamin D receptor / Vitamin D-receptor complex / ィイD119ィエD1FNMR / Conformational analysis / ビタミンD-受容体複合体 / コンフォメーション / ビタミンD-受容体コンプレックス
Research Abstract

Biological responses mediated by the active vitamin D are regulated at the level of gene expression by binding of the vitamin D receptor (VDR)-ligand complex to the target gene. The key factor in this gene transactivation is the three-dimensional structure of VDR dependent on the ligand conformation. In this research project, to directly examine the vitamin D conformation binding to the VDR, we proposed the use of ィイD119ィエD1F-NMR with fluorinated vitamin D analogs as probe compounds. In addition, we investigate the intracellular interaction of vitamin D-VDR using fluorescent-labeled vitamin D analogs.
The low temperature ィイD119ィエD1F-NMR spectra of successfully synthesized 4,4-difluoro- and 19-fluorovitamin D analogs showed separated signals ascribed to two-A-ring conformations and those analogs were shown to bind to the VDR with high affinity (Kd= ca. 10ィイD1-9ィエD1M) indicating to be useful probe to analyze the VDR-bound A-ring conformation of vitamin D. The VDR protein was expressed in … More E. coli BL21(DE3) transfected with pET-14b plasmid vector containing rat cDNA insert. The A-ring of vitamin D adopts two chair conformations, the α- and β-form. The ィイD119ィエD1F-NMRspectrum of VDR-19-fluorovitamin D complex showed that the A-ring adopts a chair α-conformation. Recently, X-ray crystal structure of the active vitamin D-mutant VDR complex was determined and in the complex, the natural ligand occupies β-conformation . More detail investigations are required to determine the active form of the A-ring conformation associated with the expression of biological activities.
We designed and successfully synthesized two novel fluorescent-labeled vitamin D analogs. Though the binding affinity of those analogs for VDR was small (0.1%) relative to the natural ligand, the VDR-bound form is estimated to be still exclusive (B/F : ca. 10ィイD18ィエD1) on the basis of Kd of the natural ligand. Visual observation of the whole cell-ligand interaction is currently progressing through the use of the fluorescent analogs. Less

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Yamada S: "Conformation-Function Relationship of Vitamin D : Conformational Analysis Predicts Potential Side Chain Structure"J. Med. Chem.. 41. 1467-1475 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yamamoto K.: "Stereochemical and Mechanistic Studies on Conjugate of Organocuprates to Acyclic Enones and Enoates : Simple Rule for Diasterofacial Selectivity"J. Org. Chem.. 63. 4449-4458 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Seko Y: "Retinoic Acid Increases in the Retina of the Chick with Form Deprivation Myopia"Ophthalmic Res. 30. 361-367 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] 清水正人: "ビタミンD代謝物の高感度同時蛍光アッセイ法と臨床への応用"医用器材研究所年報. 32. 23-36 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shimizu M.: "4,4-Difluoro-1α,25-Dihydroxyvitamin D_3 : Analog to Probe-A-Ring Conformation in Vitamin D-Receptor Complex"Tetrahedron Lett.. 40. 1697-1670 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Yamamoto K: "Tree-dimensional Structure-Function Relationship of Vitamin D : Side Chain Location and Various Activities"Bioorg. Med. Chem. Lett.. 9. 1041-1046 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Yamada: "Conformation-Function Relationship of Vitamin D : Conformational Analysis Predicts Potential Side Chain Structure."J. Med. Chem.. 41. 1467-75 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yamamoto: "Stereochemical and Mechanistic Studies on Conjugate Addition of Organocuprate to Acyclic Enones and Enoates : Simple Rule for Diasterofacial Selectivity."J. Org. Chem.. 63. 4449-58 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Y. Seko: "Retinoic Acid Increases in the Retina of the Chick with Form Deprivation Myopia."Ophthalmic Res.. 30. 361-7 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Shimizu: "Highly Sensitive, Multiple Fluorimetric Assay for Vitamin D Metabolites and Its Application to Clinical Studies."Rep. Inst. Med. Dent. Eng.. 32. 23-36 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] H. Iwasaki: "Stereoselective Synthesis and Structural Establishment of (25S)-24,24-Difluoro-1α,25-dihydroxyvitamin DィイD23ィエD2."Tetrahedron. 54. 14705-24 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] M. Shimizu: "4,4-Difluoro-1α,25-dihydroxyvitamin DィイD23ィエD2 : Analog to Probe-A-Ring Conformation in Vitamin D-Receptor Complex."Tetrahedron Lett.. 40. 1697-70 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] K. Yamamoto: "Three-dimensional Structure-Function Relationship of Vitamin D : Side Chain Location and Various Activities."bioorg. Med. Chem.. 9. 1041-1046 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] S. Yamada: "Three-Dimensional Structure-Function Relationship of Vitamin D"Vitamin. 73. 511-525 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Shimizu,M.: "4,4-Difluoro-1α,25-Dihydroxyvitamin D_3: Analog to Probe-A-Ring Conformation in Vitamin D-Receptor Complex."Tetrahedron Lett.. 40. 1697-1670 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamamoto,K.: "Tree-dimensional Structure-Function Relationship of Vitamin D: Side Chain Location and Various Activities."Bioorg.Med.Chem.Lett.. 9. 1041-1046 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 清水正人: "蛍光性ジエノフィルDMEQ-TAD: ビタミンD代謝物の高感度蛍光アッセイ法と臨床への応用"CHROMAROGRAPHY. 20. 212-215 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 山田幸子: "ビタミンDの三次元活性相関"ビタミン. 73. 511-525 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 山田幸子: "新しいビタミンD誘導体と構造活性相関"BIO Chimica. 14. 31-37 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamada,S.: "Conformation-Function Relationship of Vitamin D : Conformational Analysis Predicts Potential Side Chain Structure." J.Med.Chem.41. 1467-1475 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yamamoto,K.: "Stereochemical and Mechanistic Studies on Conjugate Addition of Organocuprates to Acyclic Enones and Enoates : Simple Rule for Diastereofacial Selectivity." J.Org.Chem.63. 4449-4458 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yuko,S.: "Retinoic Acid Increases in the Retina of the Chick with Form Deprivation Myopia." Ophthalmic Res.30. 361-367 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 清水 正人: "ビタミンD代謝物の高感度同時蛍光アッセイ法と臨床への応用" 医用器材研究所年報. 32. 23-36 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Shimizu,M.: "4,4-Difluoro-lα,25-Dihydroxyvitamin D_3 : Analog to Probe A-Ring Conformation in Vitamin D-Receptor Complex." Tetrahedron Lett.40. 1697-1700 (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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