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Structure and Function of the Boundaries of Imprinted Genome Domains

Research Project

Project/Area Number 10672137
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Human genetics
Research InstitutionNational Institute of Genetics (1999)
Kyushu University (1998)

Principal Investigator

SASAKI Hiroyuki  National Institute of Genetics, Department of Integrated Genetics, Professor, 総合遺伝研究系, 教授 (30183825)

Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 1999: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 1998: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordsgenomic imprinting / genome domain / boundary element / insulator / transgenic mouse / enhancer / エンハンサー / ゲノムドメイン / ゲノム刷り込み
Research Abstract

Imprinted genes of mammals are clustered at certain regions of the genome and forms "imprinted genome domains". However, it is unknown how each imprinted domain is defined or delimited. We investigated the structure and function of the centromeric boundary (H19-L23mrp intergenic region) of the large imprinted domain on distal chromosome 7, and obtained the following results. 1 . A non-imprinted transcripts with no large ORF (Nctc 1) was identified in the intergenic region. 2. A sequence comparison between human and mouse revealed ten evolutionarily conserved segments, and seven of these worked as tissue-specific enhancers in transgenic mice. 3. Since L23mrp does not utilize the enhancers in vivo, we linked an L23mrp transgene to the enhancers and examined whether the enhancers can activate the L23mrp promoter in transgenic mice. However, the activity of the promoter itself was too high to assess the effect of the enhancers on the promoter. 4. The presence of non-coding transcripts and the clustered organization of the enhancers resembled the locus control region (LCR) of the globin locus. Since the globin LCR is known to contain a boundary element or an insulator, it is possible that a similar mechanism operates in this boundary region.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (15 results)

All Other

All Publications (15 results)

  • [Publications] Ishihara, K.: "Sequence of a 42-kb mouse region containing the imprinted H19 locus : identification of a novel muscle-specific transcription unit showing biallelic expression"Mammalian Genome. 9. 775-777 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kato, R.: "Sequence-ready 1-Mb YAC, BAC and consmid contigs covering the distal imprinted region of mouse chromosome 7"DNA Research. 6. 401-405 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishihara, K.: "Comparative genomic sequencing identifies novel tissue-specific enhancers and elements for methylation-sensitive factors implicated in lgf2/H19 imprinting"Genome Research. (印刷中). (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sasaki, H.: "Mechanisms of lgf2/H19 imprinting : DNA methylation, chromatin and long-distance gene regulation"Journal of Biochemistry. (印刷中). (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishihara, K. et al.: "Sequence of a42-kb mouse region containing the imprinted H19 locus: identification of a novel muscle-specific transcription unit showing biallelic expression."Mammalian Genome. 9. 775-777 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kato, R. et al.: "Sequence-ready 1-Mb YAC, BAC and cosmid contigs covering the distal imprinted region of mouse chromosome 7."DNA Research. 6. 401-405 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Ishihara, K. et al.: "Comparative genomic sequencing identifies novel tissue-specific enhancers and elements for methylation-sensitive factors implicated in lgf2/H19 imprinting."Genome Research. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Sasaki, H. et al.: "Mechanisms of lgf2/H19 imprinting: DNA methylation, chromatin and long-distance gene regulation."Journal of Biochemistry. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kato, R.: "Sequence-ready 1-Mb YAC, BAC and cosmid contigs covering the distal imprinted region of mouse chromosome 7"DNA Research. 6. 401-405 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ishihara, K.: "Comparative genomic sequencing identifies novel tissue-specific enhancers and elements for methylation-sensitive factors implicated in lgf2/H19 imprinting"Genome Research. (印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sasaki, H.: "Mechanisms of lgf2/H19 imprinting : DNA methylation, chromatin and long-distance gene regulation"Journal of Biochemistry. (印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hatano,N.: "Enhancer-dependent, locus-wide regulation of the imprinted mouse insulin-like growth factor II gene" J. Biochem.123. 984-991 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Shibata,H.: "A methylation imprint mark in the imprinted gene Grf1/Cdc25^<Mm> locus shares a common feature with the U2afbp-rs gene" Genomics. 49. 30-37 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ishihara,K.: "Sequence of a 42-kb mouse region containing the imprinted H19 locus" Mamm. Genome. 9. 775-777 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kato,R.: "Quick identification and localization of CpG islands in large genomic fragments by partial digestion with HpaII and HbaI" DNA Res.5. 287-295 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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