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Interaction between the replicational initiator DnaA and the DNA polymerase components

Research Project

Project/Area Number 10680616
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

KATAYAMA Tsutomu  Kyushu University, Graduate school of Pharmaceutical Sciences, Assistant Professor, 薬学研究科, 助手 (70264059)

Co-Investigator(Kenkyū-buntansha) MIKI Takeyoshi  Kyushu University, Graduate school of Pharmaceutical Sciences, Professor, 薬学研究科, 教授 (40037586)
SEKIMIZU Kazuhisa  University of Tokyo, Graduate school of Pharmaceutical Sciences, Professor, 薬学研究科, 教授 (90126095)
Project Period (FY) 1998 – 1999
Project Status Completed (Fiscal Year 1999)
Budget Amount *help
¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 1999: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1998: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordschromosome / DNA replication / ATP / DnaA / DNA polymerase / Sliding clamp / Replicational initiation / Cell cycle / スライディング・クランプ / 染色体複製 / otiC / 大腸菌
Research Abstract

In E. coli, DnaA protein forms a complex with the chromosomal replication origin (oriC). In this complex, DnaA opens the duplex DNA. This initiation activity of DnaA protein depends on ATP binding. On the generated single stranded region, DNA polymerase III, the replicase of chromosome, is loaded.
We recently revealed that the hydrolysis of ATP bound to DnaA is accelerated by interaction with the sliding clamp of DNA polymerase III and a partially purified IdaB protein fraction. The sliding clamp is a ring-like configuration that is comprised from a dimer of the β subunit of the replicase and tethers DNA strand to the replicase. By this reaction, the ADP form of DnaA, an inactive form for initiation, is rapidly generated. We named this system RIDA for Regulatory Inactivation of DnaA, and suggested that RIDA is a main system to prevent extra initiations for maintaining the frequency of initiation only once per chromosome per cell cycle. Indeed, certain DnaA mutant proteins that are insensitive to a RIDA causes overinitiation of chromosomal replication. Moreover, we had in vivo evidence that RIDA depends on genes necessary for DNA replication. Content of the ATP form of DnaA in randomly dividing cells is 15 - 30% of total ATP/ADP-bound DnaA molecules, and when genes required for DNA replication were inactivated, the ATP-DnaA level increased up to 80%. These results suggest that the ATP-DnaA level is restrained during the cell cycle depending on DNA replication, which may be a key event to control the initiation cycle of chromosomal replication.

Report

(3 results)
  • 1999 Annual Research Report   Final Research Report Summary
  • 1998 Annual Research Report
  • Research Products

    (25 results)

All Other

All Publications (25 results)

  • [Publications] 片山 勉: "DNAポリメラーゼの新機能:染色体複製開始の負の制御"蛋白質 核酸 酵素. 44. 845-853 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Katayama, T., Kvbota, T., Kukam., K, Cvorka, E., Sekimizv, K,: "The initiator function of DnaA prrotein is negatively regulated by thesliding clamp of the E. coli chromosomal replicase."Cell. 94. 61-71 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Mizushine, T., Takaki, T., Kvbota, T., Tvchiya, T. Miki, T., Kuthyama, T., Sekimizv, K.: "Site-directed mutational analysis for the ATP binding of DnaA protein: functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo"J. Biol. Chem.. 273. 20847-20851 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kvbota, T., Mizushine, T., Tsuchiya, T., Sekimizv, K.: "Astimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli."Biochem. Biophys. Res. Commun.. 243. 90-95 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kuokama, K., Nishida, S., Emoto, A., Sekimizv, K., Katayama, T.: "Replication cyde-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli"EMBO J.. 18. 6642-6652 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Gvo, L., Katayama, T., Sekimizv, K., Miki, T.: "Isolation and characterization of novel cold-sensitive dnaA mutants of Escherichia coli."FEMS Microbiol Lett.. 176. 357-366 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Katayama, T., Sekimizv, K: "Inactivation of Escherichia coli DnaA protein by DNA polymerase III, and negative regulations for initiation of chromosomal replication."Biochimie. 81. 835-840 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takata, M., Gvo, L. Katayama, T., Seyama, Y., Milci, T., Sekimizv, K.: "Mutant DnaA proteins defective in opening of oriC, the origin of chromosomal DNA replication in Escherichia coli"Mol. Microbiol.. 35. 454-462 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Katayama, T., Kubota, T., Kurokawa, K., Crooke, E., and Sekimizu, K.: "The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase."Cell. 94(1). 61-71 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Mizushima, T., Takaki, T., Kubota, T., Tsuchiya, T., Miki, T., Katayama, T., and Sekimizu, K.: "Site-directed mutational analysis for the ATP binding of DnaA protein : functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo"J. Biol. Chem.. 273(33). 20847-20851 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kurokawa, K., Mizushima, T., Kubota, T., Tsuchiya, T., Katayama, T., and Sekimizu, K.: "A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli."Biochem. Biophys. Res. Commun.. 243(1). 90-95 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Kurokawa, K., Nishida, S., Emoto, A., Sekimizu, K., and Katayama, T.: "Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli"EMBO J.. 18(23). 6642-6652 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Guo, L., Katayama, T., Seyama, Y., Sekimizu, K., and Miki, T.: "Isolation and characterization of novel cold-sensitive dnaA mutants of Escherichia coli."FEMS Microbiol. Lett.. 176. 357-366 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Katayama, T., and Sekimizu, K.: "Inactivation of Escherichia coli DnaA protein by DNA polymerase III, and negative regulations for initiation of chromosomal replication."Biochimie. 81(8). 835-840 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Katayama, T.: "Novel function of DNA polymerase : Negative regulation for initiation of the chromosomal replication"Protein-Nucleic acid -Enzyme. 44(7). 845-853 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takata, M., Guo, L., Katayama, T., Hase, M., Seyama, Y., Miki, T., and Sekimizu, K.: "Mutant DnaA proteins defective in opening of oriC, the origin of chromosomal DNA replication in Escherichia coli"Mol. Microbiol.. 35(2). 454-462 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1999 Final Research Report Summary
  • [Publications] Takata,M,Gvo,L.,Katayama,T.,Hase,,M.,Seyama,Y.,Miki,T.,Sekimizu,K.: "Mutant DnaA proteins defective in opening of oriC, the origin of chromosomal DNA replication in Escherichia coli"Mal.Microbol. 35・.2. 454-462 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kurokawa,K.,Nishida,S.,Endo,A.,Sekimizu,K.,Katayama,T.: "Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli"EMBOJ.. 18・23. 6642-6652 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Gvo,L,Katayama,T.,Seyama,Y.,Sekimizu,K.,Miki,M.: "Isolation and characterization of novel cold-sensitive DnaA mutants of Esherichia coli."FEMS Microbiol. Lett.. 176. 357-366 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Katayama,T.,Sekimizu,K.: "Inactivation of Escherichia coli DnaA protein by DNA polymerase III, and negative regulations for initiation of chromosomal replication."Biochimie. 81・8. 835-840 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 片山 勉: "DNAポリメラーゼの新機能:染色体複製開始の負の制御"蛋白質核酸酵素. 44・7. 845-853 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 片山 勉: "DNAポリメラーゼの新機能:染色体複製開始の負の制御" 蛋白質核酸酵素. 印刷中.

    • Related Report
      1998 Annual Research Report
  • [Publications] Katayama, T., Kubota, T., Kurokawa, and Sekimizu, K: "The initator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase." Cell. 94,1. 67-71 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Mizushima T., Takaki, T., Katayama, T and Sekimizu, K: "Site-directed mutational analysis for the ATP binding of DnaA protein" J. Biol. Chem.273,33. 20847-20851 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Kurokawa, K., Mizushima, T., Katayama, T., and Sekimizu, K: "A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli." Biochem. Biophys. Res. Commun.243,1. 90-95 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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