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Molecular Design of Metalloproteins

Research Project

Project/Area Number 11228208
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionNagoya University (2002-2003)
Okazaki National Research Institutes (1999-2001)

Principal Investigator

WATANABE Yoshihito  Graduate School of Science, Department of Chemistry, Professor, 大学院・理学研究科, 教授 (10201245)

Co-Investigator(Kenkyū-buntansha) OZAKI Shin-ichi  Graduate School of Agriculature, Yamaguchi University, Professor, 農学部, 助教授 (40280581)
OGO Seiji  Graduate School of Science, Osaka University, Associate Professor, 大学院・工学研究科, 助教授 (60290904)
UENO Takafumi  Research Center for material Science, Assistant Professor, 物質科学国際研究センター, 助手 (70332179)
Project Period (FY) 1999 – 2002
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥61,600,000 (Direct Cost: ¥61,600,000)
Fiscal Year 2002: ¥7,200,000 (Direct Cost: ¥7,200,000)
Fiscal Year 2001: ¥7,200,000 (Direct Cost: ¥7,200,000)
Fiscal Year 2000: ¥6,400,000 (Direct Cost: ¥6,400,000)
Fiscal Year 1999: ¥40,800,000 (Direct Cost: ¥40,800,000)
Keywordsmyoglobin / hydroxylation / cytochrome P450 / 不斉酸化 / シッフ塩基 / 人工金属酵素 / カタラーゼ / ヘム酵素 / 活性酸素 / 金属錯体 / 酸化 / ヘム蛋白質 / ペルオキシダーゼ / 電子移動
Research Abstract

The aromatic hydroxylation is one of the hard oxidations to proceed and we have designed a myoglobin mutant which is able to oxidize aromatic ring on the basis of the following strategies 1)Introduction of the substrate, tryptophan, at the position of phenyl alanine 43.2)Replacement of histidine 64 by asparitic acid to allow rapid reaction of the mutant with hydrogen peroxide. At the same time, Valine 68 was also replaced by isoleucine to allow hydrogen peroxide readily accessing to the active site, The oxidative modification of the protein was monitored by ESI-TOF mass measurements. Upon the addition of 1 eq. of hydrogen peroxide, 16Da increase of the molecular weight was observed. Further addition of hydrogen peroxide afforded secondary product exhibiting 32Da increase of its mass. After the digestion of the protein, a fragment including W43 was purified and characterized by MALDI TOF mass and NMR. The modified residue was W43 having 6-hydroxide. This is the first example of aromatic hydroxylation by a stoichiometric amount of hydrogen peroxide. In addition, the secondary product was characterized as 2,6-dioxo-derivative of tryptophan 43.

Report

(5 results)
  • 2003 Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (50 results)

All Other

All Publications (50 results)

  • [Publications] Y.Watanabe et al.: "Isolation and Crystal Structure of Water-Soluble Iridium Hydride. Robin and Highly Active Catalyst for Acid-Catalyzed Transfer Hydrogenation of Carbonyl Compounds in Acidic Media"J.Am.Chem.Soc. 125. 4149-4154 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe et al.: "Mechanisms of Hydrogen-, Oxygen-, and Electron-Transfer Rea Lions of Cumylperoxy Radial"J.Am.Chem.Soc. 125. 9074-9082 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe et al.: "Regioselective Hydroxylation of the Xylyl Linker in a Diiron(III) Complex having a carboxylate-Rich Ligand with H2O2"J.Chem.Soc., Chem.Commun.. 1900-1901 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe et al.: "Molecular Engineering of Myoglobin : Influence of Residue 68 on the Rate and the Enantioselectivity of Oxidation Rear Lion Catalayzed by H64D/V68X Myoglobin"Biochemistry.. 42. 10174-10181 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe et al.: "Hybridization of Modified-Heme Reconstitution and Distal Histidine Mutation to Functionalize Sperm Whale Myoglobin"J.Am.Chem.Soc.. 126. 436-437 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe et al.: "Size Selective Olefin Hydrogenation by a Pd Nanocluster Provided in the Apo-Ferritin Cage"Angew.Chem.Int.Ed.. 43. 2527-2530 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 渡辺芳人: "P450の分子生物学(分担執筆)"講談社サイエンティフィク. 255 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] T.Abura, S.Oga, Y.Watanabe, S.Fukuzumi: "Isolation and Crystal Structure of Water-Soluble Iridium Hydride. Robust and Highly Active Catalyst for Acid-Catalyzed Transfer Hydrogenations of Carbonyl Compounds in Acidic Media"J. Am. Chem. Soc.. 125. 4149-4154 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] S.Fukuzumi, K.Shimoosako, T.Suenobu, Y.Watanabe: "Mechanisms of Hydrogen-, Oxygen-, and Electron-Transfer Reactions of Cumylperoxy Radical"J. Am. Chem. Soc.. 125. 9074-9082 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Furutachi, M.Murayama, A.Shiohara, S.Yamazaki, S.Fujinarni, A.Uehara, M.Suzuki, S.Ogo, Y.Watanabe, Y.Maeda: "Regioselective Hydroxylation of the Xylyl Linker in a Diiron(III) Complex having a carboxylate-Rich Ligand with H2O2"J. Chem. Soc.. 1900-1901 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Yang, T.Matsui, S.Ozaki, S.Kato, T.Ueno, G.N.Phillips, Jr., S.Fukuzumi, Y.Watanabe: "Molecular Engineering of Myoglobin : Influence of Residue 68 on the Rate and the Enantioselectivity of Oxidation Reactions Catalayzed by H64D/V68X Myoglobin"Bichemistry. 42. 10174-10181 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Sato, T.Hayashi, T.Ando, Y.Hisaeda, T.Ueno, Y.Watanabe: "Hybridization of Modified-Heme Reoonstitition and Distal Histidine Mutation to Functionalize Sperm Whale Myoglobin"J. Am. Chem. Soc.. 125. 436-437 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] T.Ueno, M.Suzuki, T.Goto, T.Matsumoto, K.Nagayama, Y.Watanabe: "Size Selective Olefin Hydrogenation by a Pd Nanocluster Provided in the Apo-Ferritin Cage"Angew. Chem. Int. Ed.. 43. 2527-2530 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe, T.Ueno: "Introduction of P450, Peroxidase, and catalase Activities into Myoglobin by Site-Dorected Mutagenesis : Diverse Reactivity of Compound I"Bull. Chem. Soc. Jpn. 76. 1309-1322 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Watanabe: "Constraction of Heme Enzymes : Four Approaches"Curr.Opin.Chem.Biol.. 6. 208-216 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Watanabe: "Rational Molecular Design of a Catalytic Site : Engineering of Catalytic Functions to the Myoglobin Active Site Framework"Ind.J.Chem.. 41. 86-87 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Wada, S.Ogo, S.Nagatomo, T.Kitagawa, Y.Watanabe, K.Jitsukawa, H.Masuda: "Reactivity of Hydrogen peroxide Bound to a Mononuclear Non-Heme iron Site"Inorg.Chem.. 41. 616-618 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Hashimoto, S.Nagatomo, S.Fujinami, H.Furutachi, S.Ogo, M.Suzuki, A.Uehara, Y.Maeda, Y.Watanabe, T.Kitagawa: "A New Mononuclear Iron(III) Complex Containing a Peroxocarbonate Ligand"Angew.Chem.Int.Ed.. 41. 1201-1205 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Ogo, T.Abura, Y.Watanabe: "pH-Dependent Transfer Hydrogenation of ketones with HCOONa as a Hydrogen Donor Promoted by (η^6-C_6Me_6)Ru Complexes"Organometallics. 21. 2964-2969 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] R.Yamahara, S.Ogo, H.Masuda, Y.Watanabe: "(Catecholata)iron(III) Complexes : Structural and Functional Models for the Catechol-Bound iron(III) Form of Catechol Dioxygenase"J.Inorg.Biochem.. 88. 284-294 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Nakai, S.Ogo, Y.Watanabe: "pH-Dependent Cross-Coupling reactions of water-Soluble organic halides with organoboron Compounds Catalyzed by the organometallic Aqua Complex [(SCS)Pd^<II>(H_2O)]^+ (SCS=C_6H_3-2,6-(CH_2SBut)_2)"Organometallics. 21. 1674-1678 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Ogo, R.Yamahara, M.Roach, T.Suenobu, M.Aki, T.Ogura, T.Kitagawa, H.Masuda, S.Fukuzumi, Y.Watanabe: "Structural and Spectroscopic Features of a cis (Hydroxo)-FeIII-(Carboxylato) Configuration as an Active Site Model for Lipoxygenases"Inorg.Chem.. 41. 5513-5530 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Abura, S.Ogo, Y.Watanabe, S.Fukuzumi: "Isolation and Crystal Structure of Water-Soluble Iridium Hydride. Robust and Highly Active Catalyst for Acid-Catalyzed Transfer Hydrogenations of Carbonyl Compounds in Acidic Media"J.Am.Chem.Soc.. 125(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Ohashi, T.Koshiyama, T.Ueno, M.Yanase, H.Fujii, Y.Watanabe: "Isolation and Crystal Structure of Water-Soluble Iridium Hydride. Preparation of Artificial Metalloenzymes by Insertion of Chromium(III)Schiff Base Complexes into Apomyoglobin Mutants"Angew.Chem.Int.Ed.. 42. 1005-1008 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Ozaki, I.Hara, T.Matsui, Y.Watanabe: "Molecular Engineering of myoglobin : The Improvement of Oxidation Activity by Replacing Phe-43 with Tryptophan"Biochemistry. 40. 1044-1052 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Ohtsu, S.Itoh, S.Nagatomo, T.Kitagawa, S.Ogo, Y.Watanabe, S Fukuzumi: "Characterization of Imidazolate-Bridged Dinuclear and Mononuclear Hydroperoxo Complexes"Inorg.Chem.. 40. 3200-3207 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] N.Haruta, M.Aki, S.Ozaki, Y.Watanabe, T.Kitagawa: "Protein Conformation Change of Myoglobin upon Ligand Binding Probed by Ultraviolet Resonance Raman Spectroscopy"Biochemistry. 40. 6956-6963 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Herold, T.Matsui, Y.Watanabe Peroxynitrite Isomerization Catalyzed by His64 Myoglobin Mutants: "Peroxynitrite Isomerization Catalyzed by His64 Myoglobin Mutants"J.Am.Chem.Soc.. 123. 4085-4086 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Tomita, S.Ogo, T.Egawa, H.Shimada, N.Okamoto, Y.Imai, Y.Watanabe, Y.Ishimura, T.Kitagawa: "Elucidation of the Differences between the 430 and 455-nm Absorbing Forms of P450-Isocyanide Adducts by Resonance Raman Spectroscopy"J.Biol.Chem. 276. 36261-36267 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] I.Hara, T.Ueno, S.Ozaki, S.Itoh, K.Lee, N.Ueyama, Y.Watanabe: "Oxidative Modification of Tryptophan-43 in the Heme Vicinity of the F43W/H64L Myoglobin Mutant"J.Biol.Chem. 276. 36067-36070 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Watanabe: "Asymmetric Oxidation of Sulfides and olefins by Myoglobin Mutants"Coordination Chem.Rev.,. 198. 39-59 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] L.Que, Y.Watanabe: "Oxygenase Pathways : Oxo, Peroxo, and Superoxo"Science. 292. 651-653 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Ozaki, M.P.Roach, T.Matsui, Y.Watanabe: "Investigations of the Roles of the Distal Heme Environment and the Proximal Heme Iron Ligand in Peroxide Activation by Heme Enzymes via Molecular Engineering of Myoglobin"Acc.Chem.Res.. 34. 818-825 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.P.Roach,S.Ozaki,Y.Watanabe: "Investigations of the Myoglobin Cavity Mutant H93G with Unnatural Imidazole Proximal Ligands as a Modular Peroxide O-O Bond Cleavage Model System"Biochemistry. 39. 1446-1454 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Ozaki,,T.Matsui,M.P.Roach Y.Watanabe: "Rational Molecular Design of a Catalytic Site : Engineering of Catalytic Function to the Myoglobin Active Site Framework"Coordination Chem.Rev.. 198. 39-59 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] R.Yamahara,S.Ogo,Y.Watanabe T.Funabiki,K.Jitsukawa,H.Masuda H.Einaga: "(Catecholato) iron (III) Complexes with Tetradentate Tripodal Ligands Containing Substituted Phenol and Pyridine Units as Structural and Functional Model Complexes for the Catechol-Bound Intermediate of Intradiol-Cleaving Catechol Dioxygenases"Inorg.Chim.Acta. 300-302. 589-596 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Hayashi,S.Fujinami,S.Otake S.Nagatomo,S.Ogo,M.Suzuki A.Uehara.Y.Watanabe,T.Kitagawa: "A Bis (μ-oxo) dicopper (II) Complex with Sterically Hindered Aromatic Nitrogen Donors : Structural Characterization, Reversible Conversion, and Reactivity"J. Am. Chem.Soc.. 122. 2124-2125 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Shiren,S.Ogo,S.Fujinami,H.Hayashi,M.Suzuki,A.Uehara Y.Watanabe,Y.Moro-oka: "Synthesis. Structures. and Properties of Bis (μ-oxo) nickel (III) and Bis(μ-superoxo) nickel (II) Complexes : An Unusual Conversion of a Ni (III)_2 (μ-O)_2 Core into a Ni(II)_2(μ-OO)_2 Core by H_20_2 and Oxygenation of Ligand"J.Am.Chem.Soc.. 122. 254-262 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Watanabe,H.Fujii: "Characterization of High-Valent Oxo-Metalloporphyrins"Structure and Bonding. 97. 62-89 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] M.P.Roach,W.J.Puspita Y.Watanabe: "Proximal Ligand Control of Heme Iron Coordination Structure and Reactivity with Hydrogen Peroxide : Investigations of the Myoglobin Cavity Mutant H93G with Unnatural Oxygen Donor Proximal"J.Inorg.Biochem.. 81. 173-182 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Ohtsu,S.Itoh,S.Nagatomo T.Kitagawa,S.Ogo,Y.Watanabe S.Fukuzumi: "Characterization of Imidazolate-Bridged (II)-Zn(II) Heterodinuclear and Cu(II)-Cu(II) Homodinuclear Hydroperoxo Complexes and Reaction Intermediate Models of Cu,Zn-SOD"J.Chem.Soc.Chem.Commun.. 1051-1052 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Ozakki,I.Hara,T.Matsui,Y.Watanabe: "Molecular Engineering of myoglobin : The Improvement of Oxidation Activity by Replacing Phe-43 with Tryptophan"Biochemistry. 40. 1044-1052 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Makihara,S.Ogo,Y.Watanabe: "pH-Selective Hydrogenation of Water-Soluble Carbon Compounds and Alkenes with [Cp^*Ir(H_2O)_3]^<2+>(Cp^*=η^5C_5H_5) as a catalyst Precusor in Very Acidic Media"Organometallics. 20. 497-500 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Goto 他: "Mechanisms of Sulfoxidation Catalyzed by High-Valent Intermediates of Heme Enzymes : Electron Transfer vs Oxygen Transfer Mechanism"J.Am.Chem.Soc. 121. 9497-9502 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Matsui 他: "Formation and Catalytic Roles of Compound I in the Hydrogen Peroxide-Dependent Oxidations by His64 Myoglobin Mutants"J.Am.Chem.Soc. 121. 9952-9957 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Murakmi 他: "Effects of Arrangement of Distal Catalytic Residue on Regioselectivity and Reactivity in the Coupled oxidation of Sperm Whale Myoglobin Mutants"J.Am.Chem.Soc. 121. 2007-2011 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Ozaki 他: "Asymmetric Oxidation Catalyzed by Myglobin Mutants, "Tetrahedron Asymmetry"Tetrahedron Asymmetry. 10. 183-192 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Matsui 他: "Effects of the Location of Distal Histidine in the Reaction of Myoglobin with Hydrogen Peroxide"J.Biol.Chem. 273. 2838-2844 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Watanabe: "High-Valent Intermediates"The Porphyrin Handbook. 4. 9497-9502 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] M.P.Roach 他: "Investigations of the Myoglobin Cavity Mutant H93G with Unnatural Imidazole Proximal Ligands as a Modular Peroxide O-O Bond Cleavage Model System"Biochemistry. 39. 2007-2011 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2018-03-28  

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