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Highly Efficient and Selective Syntheses of Phycobilin Derivatives toward Analysis of structure and Function of Phytochrome

Research Project

Project/Area Number 11440187
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Organic chemistry
Research InstitutionKANAZAWA UNIVERSITY

Principal Investigator

INOMATA Katsuhiko  Kanazawa University, Graduate School of Natural Science and Technology, Professor, 自然科学研究科, 教授 (50110599)

Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥8,500,000 (Direct Cost: ¥8,500,000)
Fiscal Year 2001: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 2000: ¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 1999: ¥4,200,000 (Direct Cost: ¥4,200,000)
KeywordsPhytochromes / Chromophore / Phycobilin Derivatives / Tetrapyrrole Compounds / Total Synthesis / Reconstitution / Structure and Function / 構造と機能 / フィトクロモビリン / フィコシアノビリン / テトラピロール誘導体 / テトラピロール
Research Abstract

Phytochrome, one of the major photosensory chromo proteins in plants, mediates a variety of light responsive developmental processes in a red/far-red photo reversible manner. The chromophore named phytochromobilin (PФB) is a linear tetrapyrrole similar in structure to phycocyanobilin (PCB), which is a chromophore of the light-harvesting pigment phycocyanin and used as a substitute for PФB to reconstitute with apoproteins. In order to analyze the structural requirements of the chromophore in phytochrome, we studied on the syntheses of phycobilin derivatives and succeeded to synthesize PФB, PCB, and PCB derivatives modified at the A-, B-, C-, and D-rings in free acid forms.
Total syntheses of PФB and PCB were achieved by employing our original synthetic reactions, I.e., 1) rearrangement of the tosyl group of 2-tosylpyrroles to the 5-position under acidic conditions, 2) efficient transformation of 2-bromo-5-tosylpyrroles to the corresponding 5-tosylpyrrolinones under acidic conditions, 3) … More Wittig-type coupling reaction between 5-tosylpyrrolinones and 2-formylpyrrole, 4) palladium catalyzed deprotection of allyl esters of propanoic acid side-chains.
To analyze the structural requirements of the chromophore for the spectral properties of phytochrome B (PhyB), we have designed and chemically synthesized 20 analogs of PCB and reconstituted them with PhyB apoprotein (PHYB). It was found that the A-ring -acts mainly as the anchor for legation to PHYB, because the modification of the side chains at the C2 and C3 positions did not significantly influence the formation or difference spectra of adducts. In contrast, the side chains of the B- and C-rings are crucial to position the chromophore properly in the chromophore pocket of PHYB and for photo reversible spectral changes. The side-chain structure of the D-ring is required for the photo reversible spectral change of the adducts. From these studies, we concluded that each pyrrole ring of the linear tetrapyrrole chromophore plays a different role in chromophore assembly and the photo chromic properties of PhyB. Less

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (40 results)

All Other

All Publications (40 results)

  • [Publications] H.Hanzawa, et al.: "Structural Requirement of Bilin Chromophore for the Photosensory Specificity of Phytochromes A and B"Proc. Natl. Acad. Sci. U.S.A.. 99(in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S.Takeda et al.: "An Efficient method for the Conversion of 2-Bromo-5-tosylpyrroles to the Corresponding 5-Tosylpyrrolinones as the D-Ring of Phycocyanobilin Derivatives"Chem. Lett.. 590-591 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] D.Sawamoto et al.: "A Highly Efficient Method for the Preparation of A/B-Ring Component of Phycobilin Derivatives Starting from Bilirubin"Chem. Lett.. 588-589 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Hanzawa, et al.: "In vitro Assembly of Phytochrome B Apoprotein with Synthetic Analogs of the Phytochrome Chromophore"Proc. Natl. Acad. Sci. U.S.A.. 98. 3612-3617 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] D.Sawamoto et al.: "Total Syntheses of Phycocyanobilin Derivatives Bearing a Modified A-Ring toward the Structure/Function Analysis of Phytochrome"Chem. Lett.. 1398-1399 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Ohta et al.: "Efficient Synthesis of B-and C-Rings Components of Phycobilin Derivatives for Structure/Function Analysis of Phytochrome"Chem Lett.. 492-493 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K.P.Jayasundera et al.: "An Efficient Method to Construct the A, B-Rings Component toward Total Syntheses of Phycocyanobilin and Its Derivative as a Photoprobe"Bull. Chem. Soc. Jpn.. 73. 497-505 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T.Kakiuchi et al.: "Total Synthesis of (±)-Phytochromobilin Starting from Two Pyrrole Derivatives"Synlett. 901-904 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Hanzawa, T. Shinomura, K. Inomata. T. Kakiuchi, H. Kinoshita, K. Wada, M. Furuya: "Structural Requirement of Bilin Chromophore for the Photo sensory Specificity of Phytochromes A and B"Proc. NatL Acad.-Sci U.S.A.. 99,No.7. 4725-4729 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] S. Takeda, K. P. Jayasundera, T. Kakiuchi, H., Kinoshita., K. Inomata.: "An Efficient Method for the Conversion of 2-Bromo-5tosylpyrroles to the Corresponding 5-Tosylpyrrolinones as the D-Ring of Phycocyanobilin Derivatives"Chem. Lett.. 590-591 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] D. Sawamoto, K. Inomata.: "A Highly Efficient Method for the Preparation of A/Bring Component of Phycobilin Derivatives Starting from Bilirubin"Chem. Lett.. 588-589 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Hanzawa, K. Inomata, H. Kinoshita, T. Kakiuchi, K., P. Jayasundera, D. Sawamoto, A. Ohta, K. Uchida, K., Wada, M. Furuya: "In vitro Assembly of Phytochrome B Apoprotein with Synthetic Analogs of the Phytochrome Chromophore"Proc. Natl. Acad. Sci U.S.A.. 98, No.6. 3612-3617 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] D. Sawamoto, H. Nakamura, H. Kinoshita, S. Fujinami, K. Inomata.: "Total Syntheses of Phycocyanobilin Derivatives Bearing a Modified A-Ring toward the Structure/Function Analysis of Phytochrom"Chem. Lett.. 1398-1399 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A. Ohta, D. Sawamoto, K. P. Jayasundera, H., Kinoshita, K. Inomata.: "Efficient Synthesis of B- and C-Rings Components of Phycobilin Derivatives for Structure/Function Analysis of Phytochrome"Chem. Lett.. 492-493 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] K. P. Jayasundera, H. Kinoshita, K. Inomata.: "An Efficient Method to Construct the A, B-Rings Component toward Total Syntheses of Phycocyanobilin and Its Derivative as a Photo probe"Bull. Chem Soc. Jpn.. 73. 497-505 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] T. Kakiuchi, H. Kinoshita, K. Inomata: "Total Synthesis of (±)-Phytochromobilin Starting from Two Pyrrole Derivatives"Synlett. 901-904 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Hanzawa: "In vitro Assembly of Phytochrome B Apoprotein with Synthetic Analogs of the Phytochrome Chromophore"Proc. Natl. Acad. Sci. U.S.A.. 98・6. 3612-3617 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Ukaji: "Asymmetric Addition of Reformatsky-Type Reagent to Imines Utilizing Diisopropyl Tartrate as a Chiral Auxiliary"Chem. Lett.. 254-255 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Takeuchi: "Asymmetric Bis(alkoxycarbonylation) Reaction of Terminal Olefins Catalyzed by palladium in the Presence of Cu(I) Triflate and a chiral Bioxazdine Ligand"Bull. Chem. Soc. Jpn.. 74・5. 955-958 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] X.Ding: "A Catalytic Asymmetric 1, 3-Dipolar Cydoaddition of Nitrones to Allyl Alclhol"Chem. Lett.. 468-469 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] D.Sawamoto: "A Highly Efficient method for the Preparation of A/B-ring Component of Phycobilin Derivatives Starting from Bilirubin"Chem. Lett.. 588-589 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Takeda: "An Efficient Method for the Conversion of 2-Bromo-5-tosylphrrdes to the Corresponding 5-Tosylpyrrdinones as the D-Ring of Phycocyandoilin Derivatives"Chem. Lett.. 590-591 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Hanzawa: "Structural Requirement of Bilin Chromophore for the Photosensory Specificity of Phytochromes A and B"Proc. Natl. Acad. Sci. U.S.A.. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] X.Ding: "Catalytic Asymmetric 1, 3-Dipolar Cycloaddition of a Nitrones Bearing a Bulky Amide Moiety to γ-Substituted Allyic Alcohols"Chem. Lett.. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.P.Jayasundera: "An Efficient Method to Construct the A, B-Rings Component toward Total Syntheses of Phycocyanobilin and Its Derivative as a Photoprobe"Bull.Chem.Soc.Jpn.. 73. 497-505 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Ukaji: "Catalytic Asymmertric Addition of Dialkylzinc to 3,4-Dihydroisoquinoline N-Oxides Utilizing Tartaric Acid Ester as a Chiral Auxiliary"Bull.Chem.Soc.Jpn.. 73. 447-452 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Ukaji: "Synthesis of Lythraceae Alkaloid Lasubin II via Optically Active 2-Isoxazoline"Heterocyles. 52No.2. 563-566 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Ukaji: "Asymmetric Addition of a Reformatsky-Type Reagent to 3, 4-Dihydoisoquinoline N-Oxides"Tetrahedron : Asymmetry. 11. 733-736 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Ohta: "Efficient Synthesis of B-and C-Rings Components of Phycobilin Derivatives for Structure/Function Analysis of Phytochrome"Chem.Lett.. 492-493 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] D.Sawamoto: "Total Syntheses of Phycocyanobilin Derivatives Bearing a Modified A-Ring toward the Structure/Function Analysis of Phytochrome"Chem.Lett.. 1398-1399 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] S.Takeuchi: "Asymmetric Bis (alkoxycarbonylation) Reaction of Terminal Olefins Catalyzed by Palladium in the Presence of Cu(1) Triflate and a Chiral Bioxazoline Ligand"Bull.Chem.Soc.Jpn.. 74(in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Hanzawa: "In vitro Assembly of Phytochrome B Apoprotein with Synthetic Analogs of the Phytochrome Chromophore"Proc.Natl.Acad.Sci.U.S.A.. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Ukaji: "Asymmetric Addition of Reformatsky-Type Reagents to Imines Utilizing Diisopropyl Tartrate as a Chiral Auxiliary"Chem.Lett.. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Xia Ding: "A Catalytic Asymmetric 1,3-Dipolar Cycloaddition of Nitrones to Allyl Alcohol"Chem.Lett.. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] T. Kakiuchi: "Total Synthesis of (±)-Phytochromobilin Starting from Two Pyrrole Derivatives"Synlett.. Spescial Issue. 901-904 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Ukaji: "Catalytic Asymmetric Addition of Dialkylzinc to 3,4-Dihydroisoquinoline N-Oxides Utilizing Tartaric Acid Ester as a Chiral Auxiliary"Bull. Chem. Soc. Jpn.. 73. 447-452 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] K.P.Jayasundera: "An Efficient Method to Construct the A,B-Rings Component toward Total Syntheses of Phycocyanobilin and Its Derivative as a Photoprobe"Bull. Chem. Soc. Jpn.. 73. 497-505 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Ukaji: "Synthesis of Lythraceae Alkaloid Lasubin II via Optically Active 2-Isoxazoline"Heterocycles. 52. 563-566 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] A. Ohta: "Efficient Synthesis of B- and C-Rings Components of Phycobilin Derivatives for Structure/Function Analysis of Phytochrome."Chem. Lett.. (印刷中). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Ukaji: "Asymmetric addition of a Reformatsky-type reagent to 3,4-dihydroisoquinoline N-oxides."Tetrahedron: Asymmetry. (印刷中). (2000)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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