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Studies on a Novel Energy-Coupling Enzyme Family Rnf That Functions at Very Low Redox Potential

Research Project

Project/Area Number 11440236
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 植物生理
Research InstitutionOsaka University

Principal Investigator

SAEKI Kazuhiko  Osaka University, Department of Biology, Graduate School of Science, Associate Professor, 大学院・理学研究科, 助教授 (40201511)

Co-Investigator(Kenkyū-buntansha) TAKAHASHI Yasuhiro  Osaka University, Department of Biology, Graduate School of Science, Lecturer, 大学院・理学研究科, 講師 (10154874)
FUKUYAMA Keiichi  Osaka University, Department of Biology, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (80032283)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥7,700,000 (Direct Cost: ¥7,700,000)
Fiscal Year 2001: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2000: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1999: ¥5,100,000 (Direct Cost: ¥5,100,000)
KeywordsRHODOBACTER / FERREDOXIN / ELECTRON-TRANSPORT / NITROGEN-FIXATION / NADH / MEMBANE-PROTEIN-COMPLEX / 鉄硫黄蛋白質 / 膜配向性 / 窒素同定 / Fe-Sクラスター
Research Abstract

The rnf(rhodobacter nitrogen fixation) operon in Rhodobacter capsulatus is essential for nitrogen fixation under light. The genes encode a protein complex in chromatophore membrane that might function as an energy-consuming NADH-ferredoxin oxidoreductase.
1) We have partially purified the Rnf complex using Ni-NTA affinity column with hexahistidine-tagged RnfB expressed the cells of non-polar rnfB mutant strain KF11l containing the corresponding modified rnfB gene. However, the iron-sulfur center in RnfB protein was so unstable that complete purification was unsuccessful.
2) Analysis by phoA-fusion method revealed that RnfA and RnfE both span membrane six times with opposite Membrane topology of transmembrane subunits RnfA, RnfD and RnfE was analyzed by the. It was revealed that RnfA and RnfE span membrane 6 times with an opposite orientation and that RnfD protein spans membrane 8 times with its central hydrophilic region exposed to periplasm.
3) Downstream analysis of the known rnf genomic region revealed there is another gene (rnfI) that is essential for nitrogen fixation. RnfI protein shows similarity to the FADbinding subunit of periplasmic flavocytochrome c sulfide dehydrogenase.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (17 results)

All Other

All Publications (17 results)

  • [Publications] Kazuhiko Saeki: "Primary Structure and Phylogenetic Analysis of the Coat Protein of a Toyama Isolate of Tobacco Necrosis Vlrus"Bioscience Biotechnology Biochemistry. 65・3. 719-724 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kazuhiko Saeki: "The Lotus Symbiont, Mesorhizobium loti : Molecular Genetic Techniques and Application"Journal of Plant Research. 113. 457-465 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yutaka Oda: "Crystal Structure of Tobacco Necrosis Virus at 2.25 Å Resolution"Journal of Molecular Biology. 300. 153-169 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Minoru Nakamura: "Hyperproduction of Recombinant Ferredoxins in Escherichia coli by Coexpression of the ORF1-the ORF2-iscS-iscU-hscB-hscA-fdx-ORF3 Gene cluster"Journal of Biochemisitry. 126. 10-18 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fabio O Pedorosa: "Nitrogen Fixation Molecules to Crop Productivity"Kluwer Academic Publishers. 700 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] M. Nakamura, <K. Saeki>_________-, and Y. Takahashi: "Hyperproduction of Recombinant Ferredoxins in Escherichia coli by Coexpression of the ORFl-ORF2-iscS-iscU-hscB-hscA-fdx-ORF3 Gene cluster"J. Biochem.. 126. 10-187 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Oda, <K. Saeki.>_________- Y. Takahashi, T. Maeda, H. Naitow, T. Tsukihara and K. Fukuyama: "Crystal Structure of Tobacco Necrosis Virus at 2.25 Å Resolution"J. Mol. Biol.. 300. 153-169 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] <K. Seki>_________- and H. Kouchi: "The Lotsu symbiont, mesorhizobium loti : Molecular Genetic Techniques and Application"J. Plant Res.. 113. 457-465 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] <K. Saeki>_________-, Y. Takahashi, H. Ohoka, T. Umeoka, Y. Oda and K. Fukuyama: "Primary Structure and Phylogenetic Analysis of the Coat Protein of a Toyama Isolate of Tobacco Necrosis Virus"Biosci. Biotechnol. Biochem.. 65. 719-724 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] <K. Saeki>_________- and H. Kumagai: "Electron Transport Pathway to Nitrogenase in Rhodobacter capsulatus : Rnf Complex and Its Relatives in Non-Diazotrophs"in Nitrogen Fixation Molecules to Crop Productivity (F. Pedorosa, A. Kondorosi & G. Walker eds.) Kluwer Academic Publishers, Dortrecht. (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kazuhiko Saeki: "Primary Structure and Phylogenetic Analysis of the Coat Protein of a Toyama Isolate of Tobacco Necrosis Virus"Bioscience Biotechnology Biochemistry. 65・3. 719-724 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kazuhiko Saeki: "The Lotus Symbiont, Mesorhizobium loti : Molecular Genetic Techniques and Application"Journal of Plant Research. 113・1112. 457-465 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yutaka Oda: "Crystal structure of tobacco necrosis virus at 2.25 Å resolution"Journal of Molecular Biology. 300・1. 153-169 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kazuhiko Saeki: "Primary Structure and Phylogenetic Analysis of the Coat Protein of a Toyama Isolate of Tobacco Necrosis Virus"Bioscience Biotechnology and Biochemistry. 65・3. 719-724 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fabio O.Pedrosa: "Nitrogen Fixation : From Molecules to Crop Productivity"Kluwer Academic Publishers, Dordrecht/Boston/London. 669 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] M. Nakamura: "Hyperproduction of recombinant ferredoxin in in Eshcerichia coli by coexpression of the ORF2-iscS-iscU-hscB-hscA-fdx-ORF3 Gene Cluster"Journal of Biochemistry. 126. 10-18 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y. Takahashi: "Functional Assignment of the ORF2-iscS-iscU-hscB-hscA-fdx-ORF3 Gene Cluster Involved in the Assembly of Fe-S Clusters in Eshcerichia coli"Journal of Biochemistry. 126. 917-926 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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