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Molecular α-taxonomy of Japanese ferns using rbcL sequence data as the first key information

Research Project

Project/Area Number 11440246
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 系統・分類
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

MURAKAMI Noriaki  Kyoto Univ., Grad. Sch. Sci., Asso. Prof., 大学院・理学研究科, 助教授 (60192770)

Co-Investigator(Kenkyū-buntansha) TAKAMIYA Masayuki  Kumamoto Univ., Fac. Sci., Asso. Prof., 理学部, 助教授 (70179555)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 2001: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 2000: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 1999: ¥10,600,000 (Direct Cost: ¥10,600,000)
Keywordsallozyme / ferns / cryptic species / molecular information / niche differentiation / rbcL / reproductive isolation / biological species / rbcL遺伝子 / 染色体数 / シマシロヤマシダ / ナチシケシダ / スジヒトツバ / シダ植物 / ミゾシダ / 人工交配実験 / アロザイム / 染色体 / 生態的分化 / 種
Research Abstract

Generally, ferns have much simpler morphology than angiosperms. Since ferns usually lack the good morphological characters available for specied recognition, multiple cryptic species may be contained within one morphological species. Recently, it has becom easier to collect DNA nucleotide sequence data from wild plants using PCR and direct sequencing techniques. This kind of molecular information has mostly been used for phylogenetic analysis, but can also useful for α-taxonomy(recognition of naturally existing species). The characters of DNA sequences may provide alternative useful information for α-taxonomy when morphology does not provide enough information about species delimitation. We are now trying to establish new molecular α-taxonomical method which is applicable to any morphologically simple plants. In this research project, we examined intra-morphospecific variations of rbcL sequences in distantly related fern groups such as Asplenium nidus(Aspleniaceae), Stegnogramma pozoi … More (Thelypteridaceae), Osmunda cinnamomea, O. claytoniana, O. regalis (Osmundaceae) and Cheiropleuria bicuspis (Cheiropleuriaceae). In each species, we found a large amount of rbcL sequence variation. In A. nidus, we carefully examined possible genetic isolation between different rbcL types found in Mt. Halimun National Park, Indonesia using artificial crossing experiments and allozyme analyses. We also conducted ecological observation of each rbcL types. Our results suggest that these rbcL types of A nidus are cryptic species because they are reproductively isolated, genetically and ecologically well differentiated. The five rbcL types in Mt. Halimun National Park should be treated as separate species even though they are difficult to ve distinguish only by their leaf gross morphology. The large amount of rbcL sequence variation in fern species may suggest that they also consist of several different reproductivelu isolated cryptic species, just as A.nidus does. We are also planning to apply the same strategy used for A. nidus for these species in order to determine their species status. Less

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] Yatabe Y. et al.: "Genetic variation in populations of the morphologically and ecologically variable fern Stegnogramma pozoi subsp. mollissima (thelvpteridaceae) in Japan"J. Plant Res.. 115. 29-39 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe, Y. et al.: "Molecular systematic study of the Asplenium nidus complex from Mt. Halimun National park. Indonesia"Am. J. Bot.. 88. 1517-1522 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takamiya, M. et al.: "Cytological, morphological. genetic and molecular phylogenetic studies on intraspecific differentiations within Diplazium doederleinii (Woodsiaceae : Pteridophyta)"Int. J. Plant Sci.. 162. 625-636 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] kato, M. et al.: "Taxonomic studies of Cheiropleuria (Dipteridaceae)"Blumea. 46. 513-525 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Murakami, N. et al.: "Phylogeny of Aspleniaceae inferred from rbcL nucleotide sequences"Am. Fern J.. 89. 232-243 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe, Y. et al.: "Phylogeny of Osmundaceae inferred from rbcL nucleotide sequences and comparison to the fossil evidences"J. Plant Res.. 112. 397-404 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe Y., Watkins J.E., Farrar D.R., N. Murakami: "Genetic variation in populations of the morphologically andecologically variable fern Stegnogrammapozoi subsp. Mollissima (Thelypteridaceae) in Japan"J. Plant Res. 115. 29-38 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe Y., Masuyama S., Darnaedi D., N.Murakami: "Molecular systematic study of the Asplenlum nidus complex from Mt. Halimun National Park, Indonesia. Evidence for reproductive isolation among three sympatric rbcL sequence types"Am. J. Bot. 88(8). 1517-1522 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takamiya M., Ohta N., Yatabe Y., N. Murakami: "Cytological, morphological genetic and molecular phylogenetic studies on intraspecific differentiations within Diplazium doederleinii (Woodsiaceae : Pteridophyta)"Int.J.Plant Sc1.. 102. 625-636 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kato M, Yatabe Y., Sahashi N., N. Murakami: "Taxonomic studies of Cheiropleuria (Dipteridaceae)"Blumea. 46. 513-525 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Murakami N., Nogami S., Watanabe M., K. Iwatsuki: "Phylogeny of Aspleniaceae inferred from rbcL nucleotide sequences"Am. Fern J.. 89. 232-243 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe Y., Nishida H., N. Murakami: "Phylogeny of Osmundaceae inferred from rbcL nucleotide sequences Yati Osn and comparison to the fossil evidences"J. Plant Res. 112. 397-404 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yatabe Y. et al.: "Genetic variation in populations of the morphologically and ecologically variable fern Stegnogramma pozoi subsp. mollissima (Thelypteridaceae) in Japan"J. Plant Res.. 115. 29-38 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yatabe Y. et al.: "Molecular systematic study of the Asplenium nidus complex from Mt. Halimun National Park, Indonesia"Am. J. Bot.. 88. 1517-1522 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Takamiya, M. et al.: "Cytological, morphological. genetic and molecular phylogenetic studies on intraspecific differentiations with in Diplazium doederleinii (Woodsiaceae : Pteridophyta)"Int. J. Plant Sci.. 162. 625-636 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kato, M. et al.: "Taxonomic studies of Cheiropleuria (Dipteridaceae)"Blumea. 46. 513-525 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kato,M. et al.: "Taxonomic studies of Cheiropleuria (Dipteridaceae)"Blumea. 46(印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yatabe,Y. et al.: "Molecular systematic study of the Asplenium nidus complex from Mt.Halimun National Park.Indonesia."Am.J.Bot.. 88(印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Takamiya,M. et al.: "Cytological, morphological, genetic and molecular phylogenetic studies on intraspecific differentiations within Diplazium doederleinii"Int.J.Plant Sci.. 462(印刷中). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yatabe et al.: "Phylogeny of Osmundaceae inferred from rbcL nucleotide sequences and comparison to the fossil evidences"J. Plant Res.. 112. 397-404 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Murakami et al.: "Phylogeny of Aspleniaceae inferred from rbcL nucleotide sequences"Amer. Fern J.. 89. 232-243 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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