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Genetic analysis of bacterial formaldehyde-fixing enzyme system and tis application of useful compound production

Research Project

Project/Area Number 11460041
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

KATO Nobuo  Graduate School of Agriculture Division of Applied Life Sciences, Kyoto University Professor, 農学研究科, 教授 (50026556)

Co-Investigator(Kenkyū-buntansha) YURIMOTO Hiroya  Graduate School of Agriculture Division of Applied Life Sciences, Kyoto University, Assistant Professor, 農学研究科, 助手 (00283648)
SAKAI Yasuyoshi  Graduate School of Agriculture Division of Applied Life Sciences, Kyoto University, Associate Professor, 農学研究科, 助教授 (60202082)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥14,100,000 (Direct Cost: ¥14,100,000)
Fiscal Year 2001: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2000: ¥2,900,000 (Direct Cost: ¥2,900,000)
Fiscal Year 1999: ¥9,000,000 (Direct Cost: ¥9,000,000)
KeywordsBacillus subtilis / Mycobacterium gastri / Methylomonas aminofaciens / Pyrococcus horikoshii / 3-Hexulose-6-phosphate synthase / 6-Phospho-3-hexuloisomerase / Fonnaldehyde-fixing enzyme system / Ribulose monophosphate pathway / メチロトローフ / DNA結合タンパク / メチロトローフ細菌 / Bacillus brevis / ホルムアルデヒド固定経路 / ホスホヘキスロースリン酸シンターゼ / Archaea / Methylomonas aminofaciens 77a / Mycobacterium gastri MB19 / ヘキシュロースリン酸シンターゼ / ホスホヘキシュロイソメラーゼ
Research Abstract

1) Genetic analysis of bacterial formaldehyde-fixing enzyme system : The genes for formaldehydefixing enzyme system in the ribulose monophosphate pathway, involving 3-hexulose-6-phosphate synthase (EPS) and 6-phospho-3-hexuloisomerase (PHI), were cloned from the facultative methylotroph, Mycobacterium gastri MB 19, and the obligate methylotroph, Methylomonas aminofaciens 77a. The two strain were different in the gene organization and regulation mechanism for the gene expression. The homologous proteins to HPS and PHI are found in a variety of strains of Archaea and Bacteria.
2) Purification of HPS and PHI from a methylotrophic and thermophilic bacterium, Bacillus brevis, and their gene analyses : HPS and PHI were purified from B. brevis and characterized A DNA fragment containing hpi and phi was cloned. From the genetic analysis for the fragment, gene cluster is an operon for hps/phi, whose expression occurred only the presence of methanol or formaldehyde.
3) Regulation in the expression of formaldehyde-fixing (hps/phi) operon in Bacillus subtilist : The gene product of yckH, which locates upstream of hps/phi operon, was purified and characterized. Several nucleotide sequence on which yckH bound specifically were found. From these and another results, it is concluded that YckH is essential for the transcription of hps/phi operon.
4) Expression and purification of HPS and PHI from a hyper thermophilic Archaean, Pyrococcus horikoshii : DNA fragments corresponding hps and phi were constructed from a DNA fragment (PH1938) of P. horikoshii. It has been confirmed that the two DNA fragments and PH1938 are enough to expression of the active enzymes for formaldehyde fixation. This is the first evidence that genes for formaldehyde fixation are active in an Archaeon.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] H.Yanase et al.: "Effects of GroESL coexpression on the folding of nicotinoprotein formaldehyde dismutase from Pseudomonas putida F61"Biosci. biotechnol. Biochem.. 66. 85-91 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Horiguchi et al.: "Peroxisomal catalase in the methylotrophic yeast Candida boidinii : Transport efficiency and metabolic significance"J. Bacteriol.. 183. 6372-6383 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Tani et al.: "Gene structure and regulation of the alkane hydroxylase complex in Achinetobacter sp. strain M-1"J. Bacteriol.. 183. 1819-1823 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] R.Mitsui et al.: "Novel operon encoding formaldehyde fixation : the ribulose monophsphate pathway in the Gram-positive facultative methylotrophic bacterium Mycobacterium gastri MB19"J. Bacteriol.. 182. 944-948 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y.Sakai et al.: "Organization of the genes involved in the ribulose monophosphate pathway in an obligate methylotrophic bacterium, Methylomonas aminofaciens 77a"FEMS Microbiol. Lett.. 176. 125-130 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 三井亮司: "ホルムアルデヒドの固定はメチロトローフだけの特技か?"化学と生物. 37. 284-286 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Yanase et al.: "Effects of GroESL coexpression on the folding of nicotinoprotein formaldehyde dismutase from Pseudomonas putida F61"Biosci. Biotechnol. Biochem. 66. 85-91 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H. Horiguchi et al.: "Peroxisomal catalase in the methylotrophic yeast Candida boidinii : Transport efficiency and metabolic significance"J. Bacteriol.. 183. 6372-6383 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] A.Tani et al.: "Gene structure and regulation of tha alkane hydroxylase complex in A Cinetobacier sp. Strain M-1"J. Bacteriol.. 183. 1819-1823 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] R. Mitsui et al.: "Novel operon encoding formaldehyde fixation : the ribulose monophosphate pathway in the Gram-positive facultative methylotrophic bacterium Mycooacienum gastri MB19"J. Bacteriol.. 182. 944-948 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Y. Sakai et al.: "Organization of the genes involved in the ribulose monophosphate pathway in an obligate methylotrophic bacterium, Methylomonas aminofaciens 77a"FEMS Microbiol. Lett.. 176. 125-130 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] H.Yanase et al.: "Effects of GroESL coexpression on the folding of nicotinoprotein formaldehyde dismutase from Pseudomonas putida F61"Biosci. Biotechnol. Biochem.. 66. 85-91 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Mukaiyama et al.: "Paz2 and 13 other PAZ gene products regulate vacuolar engulfment of peroxisomes during micropexophagy"Genes Cells. 7. 75-90 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Horiguchi et al.: "Pemxisomal catalase in the methylotrophic yeast Candida boidinii : Transport efficiency and metabolic significance"J. Bacteriol.. 183. 6372-6383 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Horiguchi et al.: "Antioxidant system within yeast peroxisome : Biochemical and physiological characterization of CbPmp20 in the methylotrophic yeast Candida boidinii"J. Biol. Chem.. 276. 14279-14288 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Yurimoto et al.: "Characterization and high-level production of D-amino acid oxidase in Candida boidinii"Biosci. Biotechnol. Biochem.. 65. 627-633 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] H.Yurimoto et al.: "Regulation and evaluation of five methanol - inducible promoters in the methylotrophic yeast Candida boidinii."Biochim.Biophys.Acta. 1493(1-2). 56-63 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Nakagawa et al.: "A methylotrophic pathway participates in pectin utilization by Candida boidinii."Appl.Environ.Microbiol.. 66(10). 4253-4257 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] M.Nishikawa et al.: "Primary structure and expression of peroxisomal acetylspermidine oxidase in the methylotrophic yeast Candida boidinii."FEBS Lett.. 476(3). 150-154 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 由里本博也,阪井康能: "メタノール資化性酵母による異種遺伝子発現"化学と生物. 38(8). 533-540 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Kato et al.: "A Novel operon encoding formaldehyde fixation: the ribulose monophosphate pathway in the Gram-positive facultative methylotrophic bacterium Mycobacterium gastri MB19"Journal of Bacteriology. 182. 944-948 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] N.Kato et al.: "Organization of the genes involved in the ribulose monophosphate pathway in an obligate methylotrophic bacterium, Methylomonas aminofaciens 77a"FEMS Microbiological Letters. 176. 125-130 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 加藤暢夫ら: "ホルムアルデヒドの固定はメチロトローフだけの特技か?"化学と生物. 37. 284-286 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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