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Analysis of reaction mechanisums and molecular evolution of C-N hydrolases

Research Project

Project/Area Number 11460042
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionUniversity of Tsukuba

Principal Investigator

KOBAYASHI Mikihiko  University of Tsukuba, Institute of Biochemistry, Professor, 応用生物化学系, 教授 (70221976)

Co-Investigator(Kenkyū-buntansha) HASHIMOTO Yoshiteru  University of Tsukuba, Institute of Biochemistry, Research Assosciate, 応用生物化学系, 助手 (00323254)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥15,100,000 (Direct Cost: ¥15,100,000)
Fiscal Year 2001: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2000: ¥4,100,000 (Direct Cost: ¥4,100,000)
Fiscal Year 1999: ¥7,600,000 (Direct Cost: ¥7,600,000)
KeywordsAmidase / Nitrilase / Nitvile / Amide / Isonitvile / Isonitvile hydratase / アシダーゼ / Rhodococcus / 加水分解酵素
Research Abstract

As to the analysis of amidase, the Arg197 residue in the Rhodococcus amidase was selected for the mutagenesis experiment because they were absolutely conserved in the common signature sequence of the amidase family. By site-directed mutagenesis, we constructed two mutant amidases, in which Argl97 was substituted with Lys (R197K) and Gin (R197Q). The identity of each mutant was confirmed by determining the complete nucleotide seouence of the mutant gene. The Escherichia coli transformant cells containing each mutant gene were cultured at 28℃ using the expression system that we established for the wild-type amidase, and then amidase activities in the supernatants of cell-free extracts prepared from the cells were measured. Each mutant enzyme containing the R197K and R197Q substitution did not exhibit any amidase activity at all. Specific activities of R197K, and R197Q mutant enzymes were less than the detection threshold, even when large amounts of the enzymes were used in the reaction f … More or 12 h. These findings indicated that Argl97 would be crucial to the catalytic activity, by functioning as an oxyanion hole stabilizing the negatively charged tetrahedral transition state.
As to the analysis of isonitrile hydratase, to overproduce isonitrile hydratase of Pseudomonas in Escherichia coli, the coding sequence (inhA) was inserted between the Ndel and EcoRl sites of PET-21a, resulting in PET-inhA in which the isonitrile hydratase gene was under the control of the T7 promoter. When E. coli harboring PET-mM was cultured in the presence of 0.1 mM IPTG at 28ーC, high-level of isonitrile hydratase activity (5.23 (xmol/min/mg) was detected in the cell-free extract; this value corresponded to 31.7 % compared with the specific activity in the isonitrile hydratase purified from the wild Pseudomonas strain. We also analyzed the cell-free extract by SDS-polyacrylamide gel electrophoresis and detected a 29 kDa protein band corresponding to the subunit of the Pseudomonas enzyme. The isonitrile hydratase produced in the recombinant cells was purified to homogeneity through ammonium sulfate fractionation and two-step column procedures. The purified enzyme gave almost the same physico-chemical properties, such as specific activity (17.3 μmol/min/mg) and molecular mass (29 kDa, apparently), as the Pseudomonas enzyme. Less

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (25 results)

All Other

All Publications (25 results)

  • [Publications] Kobayashi, M., Himizu, S.: "Cobalt proterins"Eur. J. Biochem.. 261. 1-9 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, M. et al.: "Hydrazide synthesis : Novel substrate specificity of amidase"Biochem. Biophys. Res. Commun.. 256. 415-418 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Degen, O. et al.: "Selective transport of divalent cations by transition metal permeases : The alcaligenes eatrophus HoxN and the Rhodococcus rhodochrous Nh1F"Arch. Microbiol.. 171. 139-145 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, M, Shimizu, S.: "Nitrile hydrolases"Current opinion in Chemical Biology. 4. 95-102 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamada, H. et al.: "Hydratases involved in nitrile conversion : Screening, characterization and Application"Chemical Records. 1. 151-161 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Goga, M. et al.: "Discovery of a novel enzyme, isonitirile hydratase, involved in nitrogen-carbon triple bond clearage"J. Biol. Chem.. 276. 23480-23485 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hashimoto, Y. et al.: "Site-directed mutagenesis for cystein residues of cobit-containing nitrile hidratase"J. Inorg. Biochem. (印刷中). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, M., Shimizu, S.: "Cobalt proteins"Eur. J. Biochem. 261. 1-9 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, M., Goda, M., Shimizu, S.: "Hydrazide synthesis : Novel substrate specificity of amidase"Biochem. Biophys. Res. Commun.. 256. 415-418 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Degen, 0., Kobayashi, M., Shimizu,.S., Eitinger, T.: "Selective transport of divalent cations by transition metal permeases : The Alcaligenes eutrophus HoxN and the Khodococcus rhodochrous NhlF"Arch. Microbiol.. 171. 139-145 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kobayashi, M., Shimizu, S.: "Nitrile hydrolases"Current Opinion in Chemical Biology. 4. 95-102 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamada, H., Shimizu, S., Kobayashi, M.: "Hydratases involved in nitrile conversion : Screening, characterization and application"Chemical Records. 1. 152-161 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Goga, M., Hashimoto, Y., Shimizu, S., Kobayashi, M.: "Discovery of a novel enzyme, isonitrile hydratase, involved in nitrogen-carbon triple bond cleavage"J. Biol. Chem.. 276. 23480-23485 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hashimoto, Y, Sasaki, S., Herai. S., Oinuma, K., Shimizu, S., Kobayashi, M.: "Site-directed mutagenesis for cystein residues of cobalt-containing nitri le hydratase"J. Inorg. Biochem.. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamada, H. et al.: "Hydratases involved in nitrile conversion: Screening, characterization and application"Chemical Records. 1. 152-161 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Goda, M. et al.: "Discovery of a novel enzyme, isonitrile hydratase, involved in nitrogen-carbon triple bond cleavage"J. Biol. Chem.. 276. 23480-23485 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hashimoto, Y. et al.: "Extracellular synthesis, specific recognition and intracellular degradation of cyclomaltodextrins by hyperthermophilic archaeon, Thermococcus sp. Blool"J. Bacteriol.. 183. 5050-5057 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Hashimoto, Y. et al.: "Site-directed mutasenesis for cystein residnes of cobalt-containing nitrile hydratase"J. Inorg. Biochem.. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kobayashi,M.&Shimizu,S.: "Nitrile hydrolases"Current Opinion in Chemical Biology. 4. 95-102 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 小林達彦、清水 昌: "スーパー生体触媒ニトリルヒドラターゼ:重金属コバルトとのユニークな関係"蛋白質核酸酵素. 44. 42-50 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kobayashi,M. Goda,M., & Shimizu,S: "Hydrazide synthesis: Novel substrate specifity of amidase"Biochem. Biophys. Res. Commun.. 256. 415-418 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Degen,O., Kobayashi,M. ,Shimizu,S. & Eitinger,T.: "Selective transport of divalent cartons by transition metal permeases: The Alcaligenes eutrophus HoxN and the Rhodococcus rhodochrous NhlF"Arch. Microbiol.. 171. 139-145 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kobayashi,M. & Shimizu,S.: "Cobalt proteins"Eur. J. Biochem.. 261. 1-9 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sakuradani,E., Kobayashi,M .& Shimizu,S.: "△6-Fatty acid desaturase form an arachidonic acid-producing Mortierella fungus: Gene cloning and its heterologous expression in a fungus, Aspergillus"Gene. 238. 445-453 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sakuradani,E., Kobayashi,M., Ashikari,T. & Shimizu,S.: "Identification of △12-fatty acid desaturase from arachidonic acid-producing Mortierella by heterologous expression in Saccharomyces and Aspergillus"Eur. J. Biochem.. 261. 812-820 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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