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Characterization of silica-induced protein and mechanism of microbial silica deposition

Research Project

Project/Area Number 11460047
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionKyushu University

Principal Investigator

OGATA Seiya  Kyushu Univ., Faculty of Agriculture, Professor, 農学研究院, 教授 (20038277)

Co-Investigator(Kenkyū-buntansha) YOKOYAMA Takushi  Kyushu Univ., Faculty of Science, Professor, 農学研究院, 教授 (20136419)
DOI Katsumi  Kyushu Univ., Faculty of Agriculture, Associate Professor, 農学研究院, 講師 (40253520)
KIMURA Makoto  Kyushu Univ., Faculty of Agriculture, Professor, 農学研究院, 教授 (10204992)
Project Period (FY) 1999 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥14,200,000 (Direct Cost: ¥14,200,000)
Fiscal Year 2002: ¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2001: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 2000: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1999: ¥7,000,000 (Direct Cost: ¥7,000,000)
KeywordsSilica deposition / Geothermal environments / Hyperthermophilic microorganism / Thermus thermphilus / Bio-silica / Silica-induced protein / Aluminum ion / 高度好熱細菌 / シリカ誘導性蛋白質 / Thermus属細菌 / A1イオン / 高度光熱細菌 / Thermus otakeensis
Research Abstract

A combined use of molecular ecological techniques and geochemical surveys revealed that thermophilic or hyperthermophilic microorganisms living in the geothermal environments are likely to be implicated in the formation of biogenic siliceous deposits. Electron microscopic observations indicated that numerous microorganism-like fabrics were presented in naturally occurring siliceous deposits such as siliceous sinter, geyserite, and silica scale, which suggests microbial contribution to silica precipitation. Molecular phylogenetic analysis suggested that extreme thermophilic bacteria within the genera Thermus and Hydrogenobacter are predominant components among the indigenous microbial community in siliceous deposits formed in pipes and equipment of Japanese geothermal power plants. These bacteria seem to actively contribute to the rapid formation of huge siliceous deposits. Additionally, in vitro examination suggested that Thermus cells induced the precipitation of supersaturated amorphous silica during the exponential growth phase, concomitant with the production of a specific cell envelope protein (Silica-induced protein, Sip). Sip seems to be a ferric iron-binding periplasmic protein of ABC transporter). The production of Sip was inhibited by Al ion. Dissolved silica in geothermal hot water may be a significant component in the maintenance of position and survival of microorganisms in limited niches.

Report

(5 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Inagaki, Motomura, Ogata: "Microbial silica deposition in geothermal hot waters"Appl. Microbiol. Biotechnol.. 60. 605-611 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 緒方靖哉, 土居克実: "シリカの鉱物化に微生物が作用する"九州大学研究紹介. 20. 51-52 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 緒方靖哉: "新規微生物減少の解明と応用"日本農芸化学会誌. 76. 102-113 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Inagaki, Doi, Ogata, et al.: "Silicified microbial community at Steep Cone Hot Spring, Yellowstone National Park"Microbes and Environments. 16. 125-130 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Inagaki, F., Motomura, Y. and Ogata S.: "Microbial silica deposition in geothermal hot waters"Appl.Microbiol.Biotechnol.. 60(6). 605-611 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ogata, S. and Doi, K.: "Microbial silica deposition in geothermal hot waters"Kyushu Daigaku Kenkyuu Shoukai. 20, (in Japanese). 51-52 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.Ogata: "Novel microbial phenomena and functions : Mechanisms And application"Nippon Nogeikagaku Kaishi. 76(2), (in Japanese). 102-113 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Inagaki, P., Motomura, Y. and Ogata S., et al.: "Silicified microbial community at Steep Cone Hot Spring, Yellowstone National Park"Microbes and Environments. 16(2). 125-130 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Seiya OGATA et al.: "Isolation of enterocin SE-K4-encoding plasmid and a high enterocin SE-K4 producing strain E. faecalis K-4"Journal of Bioscience and Bioengineering. 93・4. 434-436 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Seiya OGATA et al.: "Changes in the population of a wide host range actinophage isolated from Thai soil and host streptomycetes in Tai soil"Actinomycetologica. 16・2. 21-25 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 緒方 靖哉, 他: "サイレージ乳酸菌におけるバクテリオシンの有効利用と高生産性の追究"日本生物工学会誌. 80・12. 11-14 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Seiya OGATA et al.: "Microbial silica deposition in geothermal hot water"Applied Microbilogy and Biotecnology. 60・2. 601-611 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 緒方 靖哉: "バイオプリザベーションとプロバイオティクス"日本生物工学会誌. 80・12. 1-2 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 小林 武一, 緒方 靖哉: "中度好塩菌Pseudeomonas sp. No.40のCd^<2+>取込みによる菌体K^+含量の変化にタイする生理的適応"九大農学芸誌. 57・2. 153-160 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 緒方 靖哉他: "農芸化学事典 微生物の構造"(朝倉書店)(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Seiya OGATA et al.: "Silicified Microcial Community at Steep Cone Hot Spring Yellowstone National Park"Microbes and Environments. 16・2. 125-130 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Seiya OGATA et al.: "Taxonomic position of new bacteriocin (nukacin ISK-1) producer isolated from long-aged NUKADOKO"The Journal of General and Applied Microbiology. 47・2. 143-147 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 緒方 靖哉 他: "サイレージ乳酸菌の機能開発-サイレージ乳酸菌が保持するプラスミドの特性と利用開発"生物工学会誌. 79・6. 177-179 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Seiya OGATA et al.: "Disruption of the hup gene encoding a histone-like protein HSl and detection of HSl2 of Streptomyces lividans"Research in Microbiology. 152・8. 717-723 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Seiya OGATA: "Biological and Molecular Investigation of Spontaneously Developing Pocks in Streptomyces"Actinomycetologica. 15・2. 40-49 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 緒方 靖哉: "新規微生物現象の解明と応用に関する研究"日本農芸化学会誌. 76・2. 102-113 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 緒方靖哉,土居克実: "遺伝子資源として、乳酸菌とその寄生因子の特殊性と有用性を展望する"日本乳酸菌学会誌. 10・2. 72-88 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Seiya OGATA et al: "Characterization of a Phage Resistance Plasmid, pLKS, Silage-Making Lactobacillus plantarum NGRI0101"Bioscience Biotechnology and Biochemistry. 64・4. 751-756 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 緒方靖哉 他: "発酵生産プロセスにおけるバクテリオファージ汚染の防御-宿主の防御機構の解明と応用へのアプローチ-"ウイルス. 50・1. 17-26 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Seiya OGATA et al: "A chromosomal locus encoding a phosphoserine phosphatase-and a truncated MinD-like protein affects differentiation in S.azureus ATCC14921"FEMS Microbiology Letters. 190・1. 133-139 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 緒方靖哉,横山英之: "細菌のHU型ヒストン様タンパク質"ヒストン様"という概念を超えて"化学と生物. 32・12. 804-810 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Seiya OGATA et al: "Isolation and Characterization of Enterocin SE-K4 Produced by Thermophilic Enterococi, Enterococcus faecalis K-4"Bioscience Biotechnology and Biochemistry. 65・2. 247-253 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 緒方靖哉,土居克実: "動物細胞工学ハンドブック"遺伝子ターゲッティングの基礎. 4/343 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Seiya Ogata 他: "A Giant Phage Taillike Particle of Clostridium Saccharoperbutylacetonicum ATCC13564"J.Fac.Agr.Kyusyu Univ.,. 44・1・2. 127-135 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Seiya Ogata 他: "Effect of Thermophilic Becteria on the Siliceous Deposition and Phylogenetic Analysis of the Bacterial Diversity in Silica Scale"J.Fac.Agr.Kyusyu Univ.,. 44-3・4. 309-316 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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