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Construction of novel metabolic pathway by DNA shuffling of aromatic dioxygenase genes

Research Project

Project/Area Number 11460048
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

FURUKAWA Kensuke  Faculty of Agriculture, Kyushu University, Prof., 農学研究院, 教授 (90221556)

Co-Investigator(Kenkyū-buntansha) GOTO Masatoshi  Faculty of Agriculture, Kyushu University, Assistant Prof., 農学研究院, 助手 (90274521)
YOSHINO Sadazo  Faculty of Agriculture, Kyushu University, Associated Prof., 農学研究院, 助教授 (80117291)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥12,000,000 (Direct Cost: ¥12,000,000)
Fiscal Year 2001: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2000: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 1999: ¥8,800,000 (Direct Cost: ¥8,800,000)
Keywordsoxygenase / hybrid enzyme / DNA shuffling / substrate specificity / degradative genes / alkyl benzene / molecular evolutionary engineering / ダイオキシン / ジオキシゲナーゼ / Pseudomonas / PCB / 遺伝子シャフリング / 芳香族炭化水素代謝 / ジベンゾフラン
Research Abstract

Oxygenases are involved in the direct introduction of molecular oxygen into the substrates, which consisted with terminal dioxygenase (comprised with a large and a small subunits) and electron transfer system from NADH. We first revealed that the large subunit is crucially involved in the substrate specificity of oxygenase. Then we performed DNA shuffling between the two large subunits of biphenyl dioxygenases derived from Pseudomonas pseudoalcaligenes KF707 and Burkhorderia cepacia LB400. The evolved bphA1 genes were expressed in Escherichia coli along with other bph genes. Some evolved biphenyl dioxygenases exhibited enhanced transformation abilities for various polychlorinated biphenyls by introducing molecular oxygen at the 2,3- and/or 3,4 positions depending on PCB congeners. Some other evolved enzymes acquired new and novel degradation capacities for benzene, toluene and some alkylbenzenes. The mutation using random hexanucleotide oligomers allow us to get another interesting mutant oxygenase which can degrade dibenzofuran and dibenzo-p-dioxin by both lateral dioxygenation and angular dioxygenation.
The amino acid sequences of above mutant dioxygenases were determined and the relationships between structure and function were discussed.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (43 results)

All Other

All Publications (43 results)

  • [Publications] Tsuda, M., Tan.H-M, Nishi, A., Furukawa, K.: "Mobile vatablic genes in bacteria"J. Biosci. Bioeng.. 87(4). 401-410 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Nishi, A., Watanabe, T., Sakai, M., Furukawa K.: "Engineering a hybrid pseudomonad aquired 3,4-dioxygenase activity for polychlorinated biphenyls"J. Biosci. Bioeng.. 87. 430-435 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishi, A., Tominaga, K., Furukawa, K.: "A 90-kilobase conjutgative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715"J. Bacteriol.. 182. 1949-1955 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K.: "Engineering dioxygenases fro efficient degradation of environmental pollutants"Curr. Topics Biotechnol. 11. 244-249 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K.: "Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCB)"J. Gent Appl. Microbiol.. 46. 283-296 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, T., Inoue, R., Kimuna, N., Furukawa, K.: "Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcalinese KF707"J. Biol. Chem.. 275(40). 31016-31023 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Goto, M., Furukawa, K.: "Emergence of multifunctional oxygenase activities of biphenyl dioxygenase by random-priming recombination"J. Biol. Chem.. 276(25). 22500-22506 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maeda, T., Takahashi, Y., Suenaga, H., Suyama, A., Goto, M., Furukawa, K.: "Functional analyses of Bph-Tod hybrid dioxygenase which exhibits high degradation -activity toward trichloroethylene"J. Biol. Chem.. 276(32). 29833-29838 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Mitsuoka, M., Ura, Y., Watanabe, T., Furukawa, K.: "Directed evolution of biphenyl dioxygenase : emergence of enhanced degradation capacity for benzene, toluene and alkylbenzen"J. Bacteriol. 183(18). 5441-5444 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Lee, T., Tokunaga, T., Furukawa, K.: "Efficient dechlorination of tetrachloroethylene in soil slurry by combined use of an anaerobic Desulfitobacterium sp. strain Y51 and iron powder"J. Biosci. Bioeng.. 92(5). 453-458 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 古川謙介: "有害化学物質を分解するスーパー微生物の開発"化学工業. 53(2). 17-22 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K., Suenaga, H., Nishi, A., Watanabe, T., Goto, M.: "Engineering biphenyl dioxygenases to acquire wide degradation capabilities of polychlorinated biphenyls (PCB) and aromatic hydrocarbons"World Scientific Publishing Co. Pte. Ltd.. 18 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 西 哲人, 古川謙介: "IGEシリーズ29 遺伝情報のダイナミズムとその分子機構 ビフェニル/サリチル酸代謝遺伝子群をコードする自己可動化因子bph-salエレメント"東北大学遺伝生態研究センター出版. 12 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 金原和秀, 古川謙介: "バイオレメディエーション実用化への手引き"リアライズ社. 10 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tsuda, M., Tan, H-M, Nishi,A., and Furukawa,K.: "Mobile vatablic genes in bacteria"J. Biosci. Bioeng.. 87 (4). 401-410 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Nishi, A., Watanabe, T., Sakai, M. and Furukawa, K.: "Engineering a hybrid pseudomonad aquired 3,4-dioxygenase activity for polychlorinated biphenyls"J. Biosci. Bioeng.. 87. 430-435 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K., Hirose, J., Kimura, N. and Suyama, A.: "Engineering hybrid strains for the efficient degradation of chloroethenes"Proceedings of International Conference on Asian Network on Microbial Resear. 322-335 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishi, A., Tominaga, K., and Furukawa, K.: "A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715"J. Bacteriol.. 182. 1949-1955 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K.: "Engineering dioxygenases for efficient degradation of environmental pollutants"Curr. Topics Biotechnol.. 11. 244-249 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K.: "Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCB). Invited review"J. Gen. Appl. Microbiol.. 46. 283-296 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Watanabe, T., Inoue, R., Kimura, N. and Furukawa, K.: "Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcalinese KF707"J. Biol. Chem.. 275(40). 31016-31023 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Goto, M. and Furukawa, K.: "Emergence of multifunctional oxygenase activities of biphenyl dioxygenase by random-priming recombination"J. Biol. Chem.. 276(25). 22500-22506 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Maeda, T., Takahashi, Y., Suenaga, H., Suyama, A., Goto, M. and Furukawa, K.: "Functional analyses of Bph-Tod hybrid diozygenase which exhibits high degradation activity toward trichloroethylene"J. Biol. Chem.. 276(32). 29833-29838 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Mitsuoka, M., Ura, Y., Watanabe, T and Furukawa, K.: "Directed evolution of biphenyl dioxygenase : emergence of enhanced degradation capacity for benzene, toluene and alkylbenzene"J. Bacteriol.. 183(18). 5441-5444 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Lee, T., Tokunaga, T. and Furukawa, K.: "Efficient dechlorination of tetrachloroethylene in soil slurry by combined use of an anaerobic Desulfitobacterium sp. strain Y51 and iron powder"J. Biosci. Bioeng.. 92(5). 453-458 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Furukawa, K., Suenaga, H., Nishi, A., Watanabe, T. and Goto, M.: "Engineering biphenyl dioxygenases to acquire wide degradation capabilities of polychlorinated biphenyls (PCB) and aromatic hydrocarbons"World Scientific Publishing Co. Ltd.. 159-176 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Suenaga, H., Goto, M., Furukawa, K.: "Emergence of multifunctional oxygenase activities of biphenyl dioxygenase by random -priming recombination"J.Biol.Chem.. 276(25). 22500-22506 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Maeda, T., Takahashi, Y., Suenaga, H., Suyama, A., Goto, M., Furukawa, K.: "Functional analyses of Bph-Tod hybrid dioxygenase which exhibits high degradation-activity toward trichloroethylene"J.Biol.Chem.. 276(32). 29833-29838 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Suenaga, H., Mitsuoka, M., Ura, Y., Watanabe, T, Furukawa, K.: "Directed evolution of biphenyl dioxygenase : emergence of enhanced degradation capacity for benzene, toluene and alkylbenzen"J.Bacteriol. 183(18). 5441-5444 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Lee, T., Tokunaga, T., Furukawa, K.: "Efficient dechlorination of tetrachloroethylene in soil slurry by combined use of an anaerobic Desulfitobacterium sp. strain Y51 and iron powder"J.Biosci.Bioeng. 92(5). 453-458 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 古川謙介: "有害化学物質を分解するスーパー微生物の開発"化学工業. 53(2). 17-22 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Furukawa, K., Suenaga, H.Nishi, A., Watanabe, T., Goto, M.: "Engineering biphenyl dioxygenases to acquire wide degradation capabilities of polychlorinated biphenyls (PCB) and aromatic hydrocarbons"World Scientific Publishing Co. Pte. Ltd.. 159-176 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 西 哲人, 古川謙介: "IGEシリーズ29 遺伝情報のダイナミズムとその分子機構 ビフェニル/サリチル酸代謝遺伝子群をコードする自己可動化因子bph-salエレメント"東北大学遺伝生態研究センター出版. 39-50 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 金原和秀, 古川謙介: "バイオレメディエーション実用化への手引き"リアライズ社. 51-60 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nishi,A.,Tominaga,K.and Furukawa,K.: "A 90 kilobase conjugative chromosomal element coding for biphenyl and salicylate in Pseudomonas putida KF715"J.Bacteriol.. 182. 1949-1955 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Furukawa,K.: "Engineering dioxygenases fro efficient degradation of environmental pollutants"Curr.Topics Biotechnol.. 11. 244-249 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Watanabe,T.,Inoue,R.,Kimura,N.and Furukawa,K.: "Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcalinese KF707"J.Biol.Chem.. 275・40. 31016-31023 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 古川謙介,陶山明子: "難分解性有機ハロゲン化合物の微生物分解の現状と展望"生物と化学. 38. 390-397 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 末永光,古川謙介: "微生物によるPCBの分解"ファインケミカル. 29. 5-16 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tsuda.,M.,Tan,H-M,Nishi,A.,and Furukawa,K.: "Mobile vatablic genes in bacteria."J.Biosci.Bioeng.. 87・4. 401-410 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Suenaga,H.,Nishi,A.,Watanabe,T.,Sakai.M.and Furukawa,K.: "Engineering a hybrid pseudomonad aquired 3,4 dioxygenase activity for polycholorinated biphenyls."J.Biosc.Bioeng.. 87・4. 430-435 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nishi,A.,Tominaga,K., and Furukawa,K.: "A 90 kilobase conjutgative chromosomal element coding for biphenyl and salicylate catebolism in Pseudomonas putida KF715."J.Beacteriol.. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] 古川謙介、陶山明子、李泰鎬: "微生物による有機塩素化合物の分解"環境科学. 12. 449-461 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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