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Genetic analysis and diagnosis of skeletal dysplasias

Research Project

Project/Area Number 11470300
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Orthopaedic surgery
Research InstitutionSNP Research Center, RIKEN (2000)
The University of Tokyo (1999)

Principal Investigator

IKEGAWA Shiro  SNP Research Center, RIKEN, Laboratory for Bone and Joint Diseases, Laboratory Head, 変形性関節症関連遺伝子研究チーム, チームリーダー(研究職) (30272496)

Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥14,400,000 (Direct Cost: ¥14,400,000)
Fiscal Year 2000: ¥6,900,000 (Direct Cost: ¥6,900,000)
Fiscal Year 1999: ¥7,500,000 (Direct Cost: ¥7,500,000)
KeywordsSkeletal dysplasia / gene / diagnosis / disease gene / genome / cloning / bone / cartilage
Research Abstract

To establish a system for DNA diagnosis of skeletal dysplasias, genetic disorders of bone and cartilage, and gain insight for their pathogenesis, I performed genetic analysis of skeletal dysplasias and obtained the following results.
1. Isolation of a candidate gene for Shwachman syndrome
I analyzed a de novo reciprocal translocation, (t(6 ; 12)(q16.2 ; q21.2)) associated with Shwachman syndrome. I cloned the translocation breakpoints and determined the DNA sequences. I identified a gene that is disrupted by the breakpoint, a candidate gene for Shwachman syndrome.
2. Isolation of novel candidate genes
Through in silico cloning, I cloned novel candidate genes for skeletal dysplasias, ASH2L (ash2-like), PROSC (proline synthetase co-transcribed), C8orf2, CILP (cartilage intermediate layer protein), PRG4 (proteoglycan 4). I determined genomic structure and chromosomal localization of the genes, and analyzed their expression.
3. Identification of a candidate gene for Engelamnn disease
In collaboration with Prof.Niikawa's group by a positional candidate gene approach, I found the disease gene for Engelmann disease is TGF-beta1.
4. Mutation analysis of EBP gene in X-linked dominant chondrodysplasia punctata
I identified 5 novel mutations of the EBP (emopamil-binding protein) gene in X-linked dominant chondrodysplasia punctata ; three of them were nonsense and two missense mutations. I found the enzyme activity of EBP in the patients correlated well with the genotype.

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Shiro Ikegawa: "Cloning of translocation breakpoints associated with Shwachman Syndrome and identification of a candidate gene."Clinical Genetics. 55(6). 466-472 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shiro Ikegawa: "Cloning and characterization of ASHZL and Ash21, human and mouse homologs the Drosophila ash2 gene"Cytogenetics and Cell Genetics. 84(3-4). 167-172 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shiro Ikegawa: "Isolation, characterization and mapping of the mouse and human PRG4 (proteoglycan 4) genes."Cytogenetics and Cell Genetics. 90(3-4). 291-297 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shiro Ikegawa: "Novel and recurrent EBP mutations in X-linked dominant chondrodysplasia punctata"American Journal of Medical Genetics. 94(4). 300-305 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Akira Kinoshita: "Domain-Specific mutations in TGFB1 result in Camurati-Engelmann disease"Nature Genetics. 26(1). 19-20 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Masuno M, Kumano Y, Okawa A, Isomura M, Koyama K, Okui K, Makita Y, Sasaki M, Kohdera U, Okuda M, Koyama H, Ohashi H, Tajin H, Imaizumi K, Nakamura Y.: "Cloning of translocation breakpoints associated with Shwachman syndrome and identification of a candidate gene."Clin Genet. 55(6). 466-472 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Isomura M, Koshizuka Y, Nakamura Y.: "Cloning and characerization of ASH2L and Ash2l, human and mouse homologs of the Drosophila ash2 gene."Cytogenet Cell Genet. 84. 167-172 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Isomura M, Koshizuka Y, Nakamura Y.: "Cloning and characterization of a novel gene (C8orf2), a human representative of a novel gene family with homology to C.elegans C42C1.9."Cytogenet Cell Genet. 85. 227-231 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Isomura M, Koshizuka Y, Nakamura Y.: "Cloning and characterization of human and mouse PROSC (proline synthetase co-transcribed) genes."J Hum Genet. 44. 337-342 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nishimura G.Ikegawa S, Saga T, Nagai T, Aya M, Kawano T.: "Metaphyseal anadysplasia : evidence of genetic heterogeneity."Am J Med Genet. 82(1). 43-48 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakamura I, Okawa A, Ikegawa S, Takaoka K, Nakamura Y.: "Genornic structure of human CILP gene."J Hum Genet. 44. 203-205 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Ohashi H, Ogata T, Honda A, Tsukahara M, Kubo T, Kimizuka M, Shimode M, Hasegawa T, Nishimura G, Nakamura Y.: "Novel and recurrent EBP mutations in X-linked dominant chondrodysplasia punctata."Clin Dysmorphol. 8(3). 189-192 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ikegawa S, Sano M, Koshizuka Y, Nakamura Y.: "Isolation characterization and mapping of the mouse and human PRG4 (proteoglycan 4) genes."Am J Med Genet. 94(4). 300-5 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakamura S, Haga N, Shimode M, Taniguchi K, Ikegawa S, Iwaya T.: "Spondylo-epi-metaphyseal dysplasia with normal stature : a case followed from infancy to skeletal maturity."Cytogenet Cell Genet. 90(3-4). 291-297 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Makita Y, Nishimura G, Ikegawa S, Ishii T, Ito Y.: "Okuno Alntrafamilial phenotypic variability in engelmann disease (ED) : are ED and Ribbing disease the same entity?"Am J Med Genet. 91(2). 153-6 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ghadami M, Makita Y, Yoshida K, Nishimura G, Fukushima Y, Wakui K, Ikegawa S, Yamada K, Kondo S, Niikawa N, Tornita H.: "Genetic Mapping of the Camurati-Engelmann Disease Locus to Chromosome 19q13.1-q13.3."Am J Hum Genet. 66(1). 143-147 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yamada K, Tomita H, Yoshiura K, Kondo S, Wakui K, Fukushima Y, Ikegawa S, Nakamura Y, Amemiya T, Niikawa N.: "An autosomal dominant posterior polar cataract locus maps to human chromosome 30p12-q12."Dur J Hum Genet. 8(7). 535-9 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kinoshita A, Saito T, Tomita Ha, Makita Y, Yoshida K, Ghadami M, Yamada K, Kondo S, Ikegawa S, Nishimura G, Fukushima Y, Nakagomi T, Saito H, Sugimoto T, Kamegaya M, Hisa K, Murray JC, Taniguchi N, Niikawa N, Yoshiura K.: "Domain-specific mutations in TGFB1 result in Camurati-Engelmann disease."Nature Genet. 26(1). 19-20 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Shiro Ikegawa: "Isolation, characterization and mapping of the mouse and human PRG4 (proteoglycan 4) genes."Cytogenetics and Cell Genetics . 90(3-4). 291-297 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Shiro Ikegawa: "Novel and recurrent EBP mutations in X-linked dominant chondrodysplasia punctata"American Journal of Medical Genetics. 94(4). 300-305 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Akira Kinoshita: "Domain-Specific mutations in TGFB1 result in Camurati-Engelmann disease"Nature Genetics. 26(1). 19-20 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Shiro Ikegawa: "Cloning of translocation breakpoints associated with Shwachman syndrome and identification of a candidate gene"Clinical Genetics. 55(6). 466-472 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Shiro Ikegawa: "Cloning and characterization of ASH2L and Ash21,human and mouse homelogs of the Drosophila ash2 gene"Cytogenetics and Cell Genetics. 84(3-4). 167-172 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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