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Tne initiator of chromosomal DNA replication in E. coli.

Research Project

Project/Area Number 11470486
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionOKAYAMA UNIVERSITY

Principal Investigator

TSUCHIYA Tomofusa (2000-2002)  Faculty of Pharmaceutical Sciences Professor, 薬学部, 教授 (80012673)

黒田 照夫 (1999)  岡山大学, 遺伝子実験施設, 助手 (80304327)

Co-Investigator(Kenkyū-buntansha) KURODA Teruo  Gene research center Research Associate, 遺伝子実験施設, 助手 (80304327)
MIO Mitsunobu  The graduate school of natural science and technology Associate Professor, 大学院・自然科学研究科, 助教授 (70190600)
MIZUSHIMA Tohru  Faculty of Pharmaceutical Sciences Associate Professor, 薬学部, 助教授 (00264060)
KOBAYASHI Sakae  Faculty of Pharmaceutical Sciences Associate Professor, 薬学部, 助教授 (90212654)
MASUDA Kazuhumi  Faculty of Pharmaceutical Sciences Research Associate, 薬学部, 助手 (00243486)
月原 冨武  大阪大学, 蛋白質研究所, 教授 (00032277)
土屋 友房  岡山大学, 薬学部, 教授 (80012673)
Project Period (FY) 1999 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 2002: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2001: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2000: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1999: ¥3,300,000 (Direct Cost: ¥3,300,000)
KeywordsDNA replication / DnaA / ADP / ATP / regulation of activity / ATPase / リン脂質 / ORC / 酸性リン脂質 / 機能ドメイン / 結晶構造解析 / 癌 / 開始因子 / ATP結合 / Cdc6p
Research Abstract

DnaA protein, the initiator for chromosomal DNA replication in Escherichia coli, has various activities, such as oligomerization (DnaA-DnaA interaction), ATP binding. ATPase activity and membrane-binding. Site-directed mutational analyses have revealed not only the amino acid residues that are essential for these activities but also the functions of these activities. Following is a summary of the functions and regulatory mechanisms of DnaA protein in the initiation of chromosomal DNA replication. ATP-bound DnaA protein, but not other forms of the protein binds to the origin of DNA replication and forms oligomers to open-up the duplex DNA. This oligomerization is mediated by a DnaA-DnaA interaction through the N-terminal region of the protein. Alter initiation of DNA replication, the ATPase activity of DnaA protein is stimulated and DnaA protein is inactivated to the ADP-bound form to suppress the re-initiation of DNA replication. DnaA protein binds to acidic phospholipids through an ionic interaction between basic amino acid residues of the protein and acidic residues of phospholipids. This interaction seems to be involved in the re-activation of DnaA protein (from the ADP-bound form to the ATP-bound form) to initiate DNA replication after the appropriate interval.

Report

(5 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (47 results)

All Other

All Publications (47 results)

  • [Publications] Makise, M.: "Acidic phospholipids inhibit the DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Fscherichia coli"Mol.Microbiol.. 46. 245-256 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Biochemical analysis on DnaA protein with mutations in both Arg328 and Lys372"Biochem.J.. 362. 453-458 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mima, S.: "Conserved hydrophobic amino acid residues in the N-terminal region of DnaA protein are involved in DnaA-DnaA interaction"Biochem.J.. 365. 881-887 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Sequence-independent DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli"J.Biochem.. 131. 419-425 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Koterasawa, M.: "Mutational analysis on conserved hydrophobic amino and resideues in the N-terminal region of DnaA protein"Biol.Pharm.Bull.. 25. 913-915 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kondo, T.: "Suppression of temperature-sensitivity of a dnaA46 mutant by higher DNA supercoiling"Biochem.J.. 348. 375-379 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids"J.Biol.Chem.. 275. 4513-4518 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mizushima, T.: "Site-directed mutational analysis of DnaA protein, the initiator of chromosomal DNA replication in E.coli."J.Biochem.. 127. 1-7 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mima, S.: "Role of the amino-terminal region of the DnaA protein in opening of the duplex DNA at the oriC region"FEMS.Microbiol.Lett.. 176. 163-167 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Identification of a high-copy-number plasmid suppressor of a lethal phenotype caused by mutant DnaA protein which has decreased intrinsic ATPase activity"Biol.Pharm.Bull.. 22. 904-909 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yamaguchi, Y.: "Involvement of Arg-328, Arg-334, and Arg-342 of DnaA protein in the functional interaction with acidic phospholipids"Biochem.J.. 340. 433-438 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yamaguchi, Y.: "Involvement of Arg-328, Arg-334, and Arg-342 of DnaA protein in the functional interaction with acidic phospholipids"Biochem. J.. 340. 433-438 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Identification of a high-copy-number plasmid suppressor of a lethal phenotype caused by mutant DnaA protein which has decreased intrinsic ATPase activity"Biol. Pharm. Bull.. 22. 904-909 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mima, S.: "Role of the amino-terminal region of the DnaA protein in opening of the duplex DNA at theoriC region"FEMS. Microbiol. Lett.. 176. 163-167 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mizushima, T.: "Site-directed mutational analysis of DnaA protein, the initiator of chromosomal DNA replication in E. coli."J. Biochem.. 127. 1-7 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids"J. Biol. Chem.. 275. 4513-4518 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kondo, T.: "Suppression of temperature-sensitivity of a dnaA46 mutant by higher DNA supercoiling"Biochem. J.. 348. 375-379 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Molecular mechanism for functional interaction between DnaA protein and acidic phospholipids ; identification of important amino acids"J. Biol. Chem.. 276. 7450-7456 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Biochemical analysis on DnaA protein with mutations in both Arg328 and Lys372"Biochem. J.. 362. 453-458 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Sequence-independent DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli"J. Biochem.. 131. 419-425 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Mima, S.: "Conserved hydrophobic amino acid residues in the N-terminal region of DnaA protein are involved in DnaA-DnaA interaction"Biochem. J.. 365. 881-887 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Koterasawa, M.: "Mutational analysis on conserved hydrophobic amino acid residues in the N-terminal region of DnaA protein"Biol. Pharm. Bull.. 25. 913-915 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Makise, M.: "Acidic phospholipids inhibit the DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli."Mol. Microbiol.. 46. 245-256 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hoshino, T.: "Prostaglandin E_2 protects gastric mucosal cells from apoptosis via EP_2 and EP_4 receptor activation"J.Biol.Chem.. (in press).

    • Related Report
      2002 Annual Research Report
  • [Publications] Takahashi. N.: "Functions of sensor 1 and sensor 2 regions of Saccharomyces cerevisiae Cdc6p in vivo and in vitro"J.Biol.Chem.. 277. 16033-16040 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Makise, M.: "Acidic phospholipids inhibit the DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli"Mol.Microbiol.. 46. 245-256 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Lee, J.R.: "Inhibitory effects of acidic phospholipids on the binding of Origin Recognition Complex to Origin DNA"Biochem.J.. 362. 395-399 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Makise, M.: "Biochemical analysis on DnaA protein with mutations in both Arg328 and Lys372"Biochem.J.. 362. 453-458 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mima, S.: "Conserved hydrophobic amino acid residues in the N-terminal region of DnaA protein are involved in DnaA-DnaA interaction"Biochem.J.. 365. 881-887 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Makise, M.: "Molecular mechanism for functional interaction between DnaA protein and acidic phospholipids ; identification of important amino acids"J.Biol.Chem.. 276. 7450-7456 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Makise, M.: "Biochemical analysis on DnaA protein with mutations in both Arg328 and Lys372"Biochem.J.. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] Lee, J.R.: "Inhibitory effects of acidic phospholipids on the binding of Origin Recognition Complex to origin DNA"Biochem.J.. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] Makise, M.: "Sequence-independent DNA binding activity of DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli"J.Biochem.. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] Tsutsumi, S.: "Gastric irritant-induced apoptosis in guinea pig gastric mucosal cells in primary culture"Biochim.Biophys.Acta. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] Tomisato, W.: "NSAIDs induce both necrosis and apoptosis in guinea pig gastric mucosal cells in primary culture"Am.J.Physiol.Gastrointest.Liver Physiol.. 281. G1092-G1100 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Makise,M.: "Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids."J.Biol.Chem.. 275. 4513-4518 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mizushima,T: "Site-directed mutational analysis of DnaA protein, the initiator of chromosomal DNA replication in E.coli."j.Biochem. (review). 127. 1-7 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mizushima,T: "Cdc6p modulates the structure and DNA binding activity of the Origin Recognition Complex in vitro."Genes & Dev.. 14. 1631-1641 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kondo,T.: "Suppression of temperature-sensitivity of a dnaA46 mutant by higher DNA supercoiling"Biochem.J.. 348. 375-379 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tomisato,W.: "Geranylgeranylacetone protect cultured guinea pig gastric mucosal cells from cytotoxic effect of indomethacin."Dig.Dis.Sci.. 45. 1674-1679 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Makise,M.: "Molecular mechanism for functional interaction between DnaA protein and acidic phospholipids ; identification of important amino acids"J.Biol.Chem.. In press. (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Makise, M., et al.: "Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids"J. Biol. Chem.. (in press.).

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamaguchi, Y., et al.: "Involvement of Arg-328, Arg-334, and Arg-342 of DnaA protein in the functional interaction with acidic phospholipids"Biochem. J.. 340. 433-438 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Makise, M., et al.: "Identification of a high-copy-number plasmid suppressor of a lethal phenotype caused by mutant DnaA protein which has decreased intrinsic ATPase activity"Biol. Pharm. Bull.. 22. 904-909 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Mima, S. et al.: "Role of the amino-terminal region of the DnaA protein in opening of the duplex DNA at the oriC region"FEMS. Micro. Lett.. 176. 163-167 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Shimamoto T. et al.: "A retro element in Vibrio cholerae"Mol. Microbiol.. 34. 631-632 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Inoue H., et al.: "Expression of functional Na+/H+ antiporters of helicobacter pylori in antiporter deficient Escherichia coli mutants"FEBS Lett.. 443. 11-16 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2025-11-20  

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