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High-Resolution Structural Aanlyases of Dynein Molecules During Sliding By Quick-Freeze Deep-Etoh Replica Electron Microscopy

Research Project

Project/Area Number 11480185
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

KATAYAMA Eisaku  Institute of Medical Science, The University of Toyo, A/Professor, 医科学研究所, 助教授 (50111505)

Co-Investigator(Kenkyū-buntansha) SHINGYOJI Chikako  Post-graduate school of Science, The University of Tokyo, A/Professor, 理学系研究科, 助教授 (80125997)
Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥14,800,000 (Direct Cost: ¥14,800,000)
Fiscal Year 2000: ¥4,400,000 (Direct Cost: ¥4,400,000)
Fiscal Year 1999: ¥10,400,000 (Direct Cost: ¥10,400,000)
KeywordsQuick-freeze electron microscopy / Three-demensional erconstruction / Dynein / Microtubule / Actomyosin / Processive movement / コンフォメーション変化 / ホットスポット / ディープエッチ・レプリカ法 / コンピュータ・シミュレーション / 酢酸ウラニル固定 / フリーズ・ディープエッチレプリカ法 / 1分子生理学 / 構造生物学
Research Abstract

This project originally aimed to determine three-dimensional (3-D) structure of cytoplasmic dyncin/microtubule complex and its change upon sliding movement. Because of difficulty in obtaining very fresh materials with high activity, we switched the material to sea-urchin sperm flagella and studied the structure/function relationship of axonemal dyncin subspecies. We also investigated the 3-D structure of sliding actomyosin complex, using a reconstruction method which we recently developed according to the concept of "single molecule physiology". With the results of such studies as a basis, we discussed the molecular mechanism of processive motor activity which often seems to play crucial roles in dynein/microotuble sliding systems.
Many members of unconventional myosins evoke processive movement of actin filament. Myosin-V is among the most intriguing for its long lever-arm moiety and its "walking" movement with 36 nm steps, along actin filament. Such characteristic behavior of myosin-V … More has been attributed as one of the strongest evidences to support the validity of "tilting lever-arm mechanisms". We examined the behavior of myosin-V mutant with truncated lever-arm and myosin-VI which naturally has short lever-arm moiety. Interestingly, both of them showed processive movement of actin with 〜36 nm step size that is identical to original myosin-V with long lever-arm. We checked the mode of binding of those myosin heads together with dyctyostelium myosin mutant whose ADP-Pi state is extraordinarily stabilized, to actin filament by electron microscopy. Surprisingly, we found that all of those myosin heads seem to bind to actin with 〜36 nm regular intervals, and only to one side of the filament. All of these phenomena are quite difficult to explain by "tilting lever-arm hypothesis" and might suggest the possibility that the binding of one energized myosin head to actin might evoke the special high affinity site(s) (hot-spot(s)) 〜36 nm away from the original site.
According to our replica images, the structure of functioning myosin heads was roughly classified into three categories,' those bound to actin through upper 50kD domain, those bound through lower 50kD domain and those bound through both 50kD domains. If the particles with different structures are postulated to represent the time-course of myosin's structural change, we might assume that myosin head proceeds actin filament involving certain "rocking motion".
The B-band component of sea urchin axoneme turned out to be a dyncin subspecies. Less

Report

(3 results)
  • 2001 Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Tamano, K.: "Spa32 Is an essential secretory protein for functional type III secretion machinery and uniformity of its needle length"Journal of Bacteriology. 184(5). 1244-1252 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tanaka H: "The motor domain determines the large step of myosin-V"Nature. 415(6868). 192-195 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishikawa S: "Class VI myosin moves processively along actin filaments backward with large steps"Biochemical and Biophysical Research Communications. 290(1). 311-317 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tamano, K.: "Supramolecular structure of shigella type III secretion machinery : the needle part is changeable in length and essential for delivery of effectors"EMBO Journal. 19(15). 678-684 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sakakibara H: "Inner-arm dynein c of chlamydomonas flagella is a single-headed processive motor"Nature. 400(6744). 586-590 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Konishi N: "Structure and enzymatic properties of genetically truncated forms of the water-insoluble glucan-synthesizing glucosyltransferase from streptococcus sobrinus"Journal of Biochemistry. 126(2). 287-295 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Bannai H: "Calcium regulation of microtubule sliding in reactivated sea urchin sperm flagella"Journal of Cell Science. 113(pt,5). 831-839 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yoshimura M: "Effects of the central pair apparatus on microtubule sliding velocity in sea urchin sperm flagella"Cell Structure and Function. 24(1). 43-54 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 真行寺千佳子: "振動する生物分子モーター「ダイニン」"生物物理. 40(2). 111-116 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tamano, K.: "Spa32 Is an essential secretory protein for functional type III secretion machinery and uniformity of its needle length"Journal of Baeteriology. 184(5). 1244-1252 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tanaka H.: "The motor domain determines the large step of myosin-V"Nature. 415(6868). 192-195 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishikawa S.: "Class VI myosin moves processively along actin filaments backward with large steps"Biochemical and Biophysical Research Communications. 290(1). 311-317 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tamano, K.: "Supramoleculars tructure of shigella type III secretion machinery : the needle part is changeable in length and essential for delivery of effectors"EMBO Journal. 19(15). 678-684 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sakakibara H.: "Inner-arm dynein c of chlamydomonas flagella a is a single-headed processive motor"Nature. 400(6744). 586-590 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Konishi N.: "Structure and enzymatic properties of genetically truncated forms of the water-insoluble glucan-synthesizing glucosyltransferase from streptococcus sobrinus"Journal of Biochemistry. 126(2). 287-295 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Bannai H.: "Calcium regulation of microtubule slinding in reactivated sea urchin sperm flagella"Journal of Cell Science. 113(pt,5). 831-839 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yoshimura M.: "Effects of the central pari apparatus on microtubule sliding. velocity in sea urchin sperm flagella"Cell Structure and Function. 24(1). 43-54 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamane,K.: "Retinoblastoma susceptibility protein, pRb, possesses multiple BRCT- Ws, BRCA1carboxyl-terminus-related W regions with DNA break-binding activity"Oncogene. 19(16). 1982-1991 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tamano,K.: "Supramolecular structure of Shigella type III secretion machinery : the needle part is changeable in length and essential for delivery of effectors"EMBO Journal. 19(15). 3876-3887 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Utsunomiya-Tate,N.: "Reelin molecules assemble together to form a large protein complex, which is inhibited by the function-blocking CR-50 antibody"Proceedings of National Academy of Science U.S.A.. 97(17). 9729-9734 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yamane,K.: "The BRCT Regions of Tumor Suppressor BRCA1 and of XRCC1 show DNA end binding activity with a multimerizing feature"Biochemical and Biophysical Research Communications. 279(2). 678-684 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yamane,K.: "p53 contains a DNA break-binding motif similar to the functional part of BRCT-related region of Rb."Oncogene. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sakakibara,H.: "Inner-arm dynein subspecies c of Chlomydomunas flagella is a single-headed processive motor with strain sensitivity"Nature. 400(6744). 586-590 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ito,K.: "Cooperativity between twoheads of Dictyostelium myosin II in in vitro motility and ATP hydrolysis"Biophysical Journal. 76(2). 985-992 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Murayama,T Oba,T. Katayama,E (equal contribution): "Further Characterization of the type 3 ryanodine receptor (PyR3) purified from rabbit diaphragm"Journal of Biological Chemistry. 274(24). 17297-17308 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Konishi,M.: "Structure and enzymatic properties of genetically truncated forms of the water-insoluble glycan-synthesizing glycotransferase from Strepto coccus sobrinus"Journal of Biochemistry. 126(2). 287-295 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tobe,T.: "A novel chromosomal locus of enteropathogenic Escherichia coli(EPEC), which encodes abfpT-regulated chaperone-like protein, TrcA, involved in microcolony formats by EPEC"Molecular Microbiology. 33(4). 741-752 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamane,K.: "Retinoblastoma susceptibility protein, pR6, possesses multiple BRCT-Ws, BRCA1 corboxyl-terminus-related W regions with DNA break-binding activity"Oncogene. (in press). (2000)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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