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Single-molecule imaging of processing and transport of mRNA within a living cell

Research Project

Project/Area Number 11480196
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionWaseda University

Principal Investigator

FUNATSU Takashi  Waseda University, School of Science and Engineering, Associate Professor, 理工学部, 助教授 (00190124)

Co-Investigator(Kenkyū-buntansha) TANI Tokio  Kumamoto University, Faculty of Science, Professor, 理学部, 教授 (80197516)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥13,500,000 (Direct Cost: ¥13,500,000)
Fiscal Year 2001: ¥2,800,000 (Direct Cost: ¥2,800,000)
Fiscal Year 2000: ¥4,900,000 (Direct Cost: ¥4,900,000)
Fiscal Year 1999: ¥5,800,000 (Direct Cost: ¥5,800,000)
KeywordsmRNA / single-molecule imaging / fluorescence microscopy / スプライシング / 蛍光エネルギー移動
Research Abstract

Messenger RNA is transcribed and processed in the nucleus and transported to the cytoplasm. In order to clarify the molecular mechanism of these processes, we have developed video-rate confocal microscopy that enabled us to visualize single fluorescence molecules. Movement of individual mRNA molecules within living cell was visualized by this microscopy to distinguish whether mRNA is directed by active transport or moving around by diffusion. For this purpose, Cy3-labeled truncated human β-globin mRNA molecules were prepared in vitro and micro-injected into the nucleus of Xenopus A6 cell. Cy3-labeled mRNA molecules could be observed except nucleoli, indicating that mRNA could access most of the space, excluding nucleoli, in the nucleus. Some population of mRNA moved around in diffusion, and some remained stationary. Statistical analysis of individual mRNA trajectories revealed that about 50 % of mRNA is moving at the diffusion constant of 0.2[μm^2/s]. This value is about 1/40 of that in solution (9 [μm2/s]). Our results support the mechanism that mRNA reach nuclear pores by diffusion process.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (36 results)

All Other

All Publications (36 results)

  • [Publications] Harada, Y. et al.: "Single molecule imaging of RNA polymerase-DNA interactions in real time"Biophysical J.. 76. 709-715 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishii, Y. et al.: "Fluorescence resonance energy transfer between single fluorophores attached to a coiled-coil protein in aqueous solution"Chemical Physics.. 247. 163-173 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Wazawa T. et al.: "Spectral Fluctuation of a Single Fluorophore Conjugated to a Protein Molecule"Biophysical J.. 78. 1561-1569 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tashiro, K. et al.: "Design and simulation of particles and biomolecules handling micro flow cells with three-dimensional sheath flow"Micro Total Analysis Systems 2000 (A.van den Berg et al.eds.). 209-212 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamaguchi, J. et al.: "Rapid functional analysis of protein-protein interactions by fluorescent C-terminal labeling and single-molecule imaging"FEBS Lett.. 502. 79-83 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Taguchi, H. et al.: "Single-molecule observation of protein-protein interactions in the chaperonin system"Nature Biotechnology. 19. 861-865 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tadakuma, H. et al.: "Imaging of Single Fluorescent Molecules Using Video-rate Confocal Microscopy"Biochem Biophys Res Commun.. 287. 323-327 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 船津高志, 多田隈尚史: "1分子蛍光イメージング法"non-RI実験の最新プロトコール(羊土社:栗原靖之, 武内恒成, 松田洋一編). 165-166 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 船津高志, 多田隈尚史: "タンパク質の動き"顕微鏡フル活用術イラストレイテッド 基礎から応用まで(秀潤社). 171-174 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 齋藤究, 船津高志: "近接場光学の原理と生物科学への応用"蛋白質核酸酵素. 44. 807-811 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 船津高志: "1分子の生体高分子を観て操る"高分子. 48. 906-909 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 田口英樹: "シャペロニンとGFPフォールディング"生物工学会誌. 78. 384-386 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 多田隈尚史, 船津高志: "生きた細胞の核内mRNAの1分子蛍光イメージング"細胞工学. 20. 672-677 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 船津高志 (編): "生命科学を拓く新しい光技術"共立出版. 186 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harada, Y., T. Funatsu, K. Murakami, Y. Nonoyama, A. Ishihama, and T. Yanagida: "Single molecule imaging of RNA polymerase-DNA interactions in real time"Biophysical J.. 76. 709-715 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ishii, Y. T. Yoshida, T. Funatsu, T. Wazawa, and T. Yanagida: "Fluorescence resonance energy transfer between single fluorophores attached to a coiled-coil protein in aqueous solution"Chemical Physics. 247. 163-173 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Wazawa T., Y. Ishii, T. Funatsu, and T. Yanagida: "Spectral Fluctuation of a Single Fluorophore Conjugated to a Protein Molecule"Biophysical J.. 78. 1561-1569 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tashiro, K., T. Sekiguchi, S. Shoji, T. Funatsu, W. Masumoto, H. Sato: "Design and simulation of particles and biormolecules handling micro flow cells with three-dimensional sheath flow"Micro Total Analysis Systems 2000 (A. van den Berg et al. eds.). 209-212 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamaguchi J., N. Nemoto, T. Sasaki, A. Tokumasu, Y. Mimori-Kiyosue, T. Yagi, and T. Funatsu: "Rapid functional analysis of protein-protein interactions by fluorescent C-terminal labeling and single-molecule imaging"FEBS Lett.. 502. 79-83 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Taguchi, H., T. Ueno, H. Tadakuma, M. Yoshida, T. Funatsu: "Single-molecule observation of protein-protein interactions in the chaperonin system"Nature Biotechnol.. 19. 861-865 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tadakuma, H., Yamaguchi, J., Ishihama, Y., Funatsu, T.: "Imaging of Single Fluorescent Molecules Using Video-rate Confocal Microscopy"Biochem Biophys Res Commun.. 287. 323-327 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yamaguchi, J. et al.: "I Rapid functional analysis of protein-protein interactions by fluorescent C-terminal labeling and single-molecule imaging"FEBS Lett.. 502. 79-83 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Taguchi, H. et al.: "Single-molecule observation of protein-protein interactions in the chaperonin system"Nature Biotechnology. 19. 861-865 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tadakuma, H. et al.: "Imaging of Single Fluorescent Molecules Using Video-rate Confocal Microscopy"Biochem Biophys Res Commun. 287. 323-327 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 多田隈尚史, 船津高志: "生きた細胞の核内mRNAの1分子蛍光イメージング"細胞工学. 20. 672-677 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Wazawa,T. et al.: "Spectral Fluctuation of a Single Fluorophore Conjugated to a Protein Molecule."Biophysical J. 78. 1561-1569 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Tashiro,K. et al.: "Design and simulation of particles and biomolecules handling micro flow cells with three-dimensional sheath flow."Micro Total Analysis Systems 2000. 209-212 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 田口英樹 ら: "シャペロニンとGFPフォールディング"生物工学会誌. 78. 384-386 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Beales,M. et al.: "Mutations in the large subunit of U2AF disrupt pre-mRNA splicing, cell cycle progression and nuclear structure."Yeast. 16. 1001-1013 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Y.Harada, T.Funatsu et al.: "Single molecule imaging of RNA polymerase-DNA interactions in real time."Biophysical Journal. 76. 709-715 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Ishii et al.: "Fluorescence resonance energy transfer between single fluorophores attached to a coiled-coil protein in agueous solution"Chemical Physics. 247. 163-173 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Wazawa et al.: "Spectral fluctuation of a Single fluorophore conjugated to a protein molecule."Biophysical Journal. 78(in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] 齋藤究,船津高志: "近接場光学の原理と生物科学への応用"蛋白質 核酸 酵素. 44. 807-811 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 船津高志: "1分子の生体高分子を観て操る"高分子. 48. 906-909 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 船津高志,多田隈尚史: "1分子蛍光イメ-ジング法"non-RI実験の最新プロトコ-ル. 165-166 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 船津高志(編): "生命科学を拓く新しい光技術"共立出版. 186 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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