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A Comprehensive Study on Intrusion and Cooperation of Genomes

Research Project

Project/Area Number 11490007
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field 広領域
Research InstitutionThe University of Tokyo

Principal Investigator

SHIMA Akihiro  Graduate School of Frontier Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (60011590)

Co-Investigator(Kenkyū-buntansha) UEDA Takuya  Grad.Sch.Frontier Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (80184927)
HASEZAWA Seiichiro  Grad.Sch.Frontier Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (40172902)
AMEMIYA Shounan  Grad.Sch.Frontier Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (30011670)
OHYA Yoshikazu  Grad.Sch.Froniter Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (20183767)
KAWANO Shigeyuki  Grad.Sch.Frontier Sciences, The University of Tokyo, Prof., 大学院・新領域創成科学研究科, 教授 (70161338)
Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥13,200,000 (Direct Cost: ¥13,200,000)
Fiscal Year 2000: ¥4,600,000 (Direct Cost: ¥4,600,000)
Fiscal Year 1999: ¥8,600,000 (Direct Cost: ¥8,600,000)
Keywordstelomere / gene homing / extrachromosomal DNA / caspase / polysemous codon / germ cell mutation / single-pollen analysis / prothoracic glands / レトロトランスポゾン / 利己的遺伝子 / メダカ生殖細胞自然突然変異率 / 前胸線抑制ペプチド(PTSP)産生器官 / ウニ左右性関連遺伝子 / ラン色細菌 / 神経伝達物質 / 嗅覚受容体 / タバコ培養細胞 / 前胸腺抑制ホルモン / エクジソン分泌
Research Abstract

Endonuclease domain of telomere associated non-LTR retrotransposon, TRAS1 of the silkworm could recognize and cleave the telomeric repeat (TTAGG) n. Yeast PI-SceI was used as a model system to study molecular mechanism of gene homing. Gene organization, replication system and expression of extrachromosomal DNAs from plant mycoplasma mutant lines and its relationship with host specificity and pathogenicity were analyzed, DEVDase activation was correlated with cyclobutane pyrimidine dimers, but the UVC-induced apoptosis occurred independent of the caspase-3-like activation in the Medaka cells. The molecular mechanism of emergence of polysemous codon was clarified by analyzing leucine acceptance of mutant tRNAs synthesized in vitro. Crossing of the Medaka of the HNI strain to those of the T5 tester strain revealed that the female germ cells of the HNI strain showed a remarkably higher spontaneous total mutation rates compared to that found for those of the males, however, the spontaneous … More viable mutation rates were lower in females than males, indicating that the spontaneous mutations in female germ cells are associated with larger deletions of the genome. Several STS makers were isolated from the dioecious plant, Silene latifolia, and then single-pollen analysis and isolation of a BAC clone were accomplished. Mechanism of inhibition and acclimation of photosynthetic machinery to environmental stress and its significance were studied from the evolutional point of view. Dynamics and roles of cortical microtubules in higher plant cells were investigated using living cells stably expressing GFP-tubulin proteins. The regulatory genes, Hox, Otx, and the engrailed were cloned from a sea lily, Metacrinus rotundus, for analyzing the expression pattern. A nine-residue peptide inhibiting ecdysteroid biosynthesis in the prothoracic glands was isolated from the larval brains of the silkworm, Bombyx mori. Ligand specificity of olfactory receptors was investigated in a functionally-reconstituted system. Differentiation of the intestinal crypt cells to the epithelium was characterized using IEC-6 cells transfected with a homeobox gene, Cdx-2. Proliferation and differentiation of neural stem cells are regulated by a tumor suppressor, p53. Novel members of visual pigment genes and their genomic organizations were revealed in New World primates and zebrafish. Less

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (63 results)

All Other

All Publications (63 results)

  • [Publications] Minokawa,T. et al.: "Timing of the potential of micromere-descendants in echinoid embryos to induce endoderm differentiation"Dev.Growth Differ.. 41. 535-547 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kurokawa,D. et al.: "HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation of the -"Mechanisms of development. 80. 41-52 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sonoike,K.: "The different roles of chilling temperatures in the photoinhibition of photosystem I and photosystem II."J.Photochem.Photobiol.B:Biol.. 48. 136-141 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakashima,K. et al.: "Synergistic signaling in fetal brain by STAT3-Smad1-"Science. 284. 479-482 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yamada,K. et al.: "NMDA receptor mediated Ca2+ responses in neurons-"Neurosci.Lett.. 264. 165-167 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nakashima,K. et al.: "Developmental requirement of gp 130 signaling in-"J.Neurosci.. 19. 5429-5434 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Touhara K. et al.: "Functional identification and reconstitution of an-"Proc.Natl.Acad.Sci.,U.S.A.. 96. 4040-4045 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kumagai,F. et al.: "Putative involvement of a 49 kDa protein in microtubule"Eur.J.Cell Biol.. 78. 109-116 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Takahashi,H. et al.: "Transcription analysis of the telomeric repeat-specific"Nucl.Acids Res.. 27. 2015-2021 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Satake,S. et al.: "Bombyxin secretion in the adult silkmoth Bombyx mori"J.Insect Physiol.. 45. 939-945 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Nagata,K. et al.: "Prothoracicotropic activity of SBRPs ; the insulin-like"Biochem.Biophys.Res.Commun.. 266. 575-578 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Satu,H. et al.: "Hypertonicity stimulates taurine uptake and transporter"Biochi.Biophys.Acta. 1419. 89-96 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Amemiya,S. & Kitazawa,C.: "Regulating potential in development throughout meta-"Dev.Growth Differ.. (In press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kawamura,S.: "Evolution of red-green visual pigment genes and color-"Primate Research. 16. 111-124 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hisatsune,T., et al.: "Immortalized hippocampal neural precursor cell lines"Cytotechnology. 33. 53-61 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Miyamoto,Y., et al.: "Regulation of amino acid transporters by interferon-"Essential Amino Acid Res.. 158. 6-13 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ueda,T.: "Modification defect at anticodon wobble nucleotide of-"J.Biol.Chem.. 275. 4251-4257 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ohya,Y., et al.: "A fluorescent indicator for detecting protein-protein-"Anal.Chem.. 72. 5151-5157 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hasezawa,S.: "Time-sequence observations of microtubule dynamics-"Plant Cell Physiol.. 41. 244-250 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Touhara,K.: "Molecular mechanism of odor recognition : Biochemistry-"Cell Technology. 19. 111-119 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujiwara,H. et al.: "Expression of ecdysteroid-regulated genes is reduced-"Dev.Genes Evol.. 210. 120-128 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Namba,S., et al.: "In planta expression of a protein encoded by the extra-"Microbiology. (in press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kataoka,H., et al.: "Dynamic regulation of prothoracic gland ecdysteroidogenesis-"Insect Biochem.Mol.Biol.. 30. 1079-1089 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Mitani,H.,Shima,A. et al.: "A detailed linkage map of Medaka,Oryzias latipes-"Genetics. 154. 1773-1784 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sonoike,K.: "Probing Photosynthesis : Mecahnism,Regulation and Adaptation"Taylor & Francis,London. (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kitazawa, C.and Amemiya, S.: "Regulating potential in development throughout metamorphosis of a direct developing echinoid, Peronella japonica"Dev.Growth Differ. (in press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sonoike, K.: "Photoinactivation of the two photosystems in oxygenic photosynthesis-Mechanisms and regulations."Probing Photosynthesis : Mechanism, Regulation and Adaptation (2000) pp.293-309 (M.Yunus, U.Pathre and P.Mohanty, eds.), Taylor & Fancis, London..

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kawamura, S.: "Evolution of red-greenvisual pigment genes and color vision of New World monkeys."Primate Research. 16. 111-124 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hisatsune T, et al.: "Immortalized hippocampal neural precursor cell lines."Cytotechnology. 33. 53-61 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Miyamoto, Y.et al.: "Regulation of amino acid transportersby interferon-gamma in the intestinal epithelial cells."Essential Amino Acid Res.. 158. 6-13 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ueda, T.: "Modification defect at anticodon wobble nucleotide of mitochondrial tRNAs^<Leu> (UUR) with pathogenic mutations of mitochondrial myopathy, encephalopahty, lactic acidosis, and stroke-like episodes."J.Biol.Chem.. 275. 4251-4257 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ohya Y., et al.: "A fluorescent indicator for detecting protein-protein interactions in vivo based on protein splicing."Anal.Chem.. 72. 5151-5157 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hasezawa S.: "Time-sequence observations of microtubule dynamics throughout mitosis in living cell suspensions of stable transgenic Arabidopsis. -Direct evidence for the origin of cortical microtubules at M/G1 interface"Plant Cell Physiol. 41. 244-250 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Touhara, K.: "Molecular mechanism of odor recognition : biochemistry and molecular biology of olfactory receptors"Cell Technology. 19. 111-119 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujiwara, H,. et al.: "Expression of ecdysteroid-regulated genes is reduced specifically in the wing discs of the wing-deficient mutant (fl) of Bombyxmori."Dev.Genes Evol.. 210. 120-128 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Namba, S., et al.: "In planta expression of a protein encoded by the extrachromosomal DNA of phytoplasma and related to geminivirus replication proteins."Microbiology. (in press). (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kataoka, H., et al.: "Dynamic regulation of prothoracic gland ecdysteroidogenesis : Manduca sexta recombinant prothoracicotropichormone and brain extracts have identical effects."Insect.Biochem.Mol.Biol.. 30. 1079-1089 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Mitani, H., Shima, A., et al.: "A detailed linkage map of Medaka, Oryzias latipes : Comparative genomics and genome evolution"Genetics. 154. 1773-1784 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Amemiya,S.& Kitazawa,C.: "Regulating potential in development throughout meta-"Dev.Growth Differ.. (In press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawamura,S.: "Evolution of red-green visual pigment genes and color-"Primate Research. 16. 111-124 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hisatsune,T., et al.: "Immortalized hippocampal neural precursor cell lines"Cytotechnology. 33. 53-61 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Miyamoto,Y., et al.: "Regulation of amino acid transporters by interferon-"Essential Amino Acid Res.. 158. 6-13 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ueda,T.: "Modification defect at anticodon wobble nucleotide of-"J.Biol.Chem.. 275. 4251-4257 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ohya,Y., et al.: "A fluorescent indicator for detecting protein-protein-"Anal.Chem.. 72. 5151-5157 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hasezawa,S.: "Time-sequence observations of microtubule dynamics-"Plant Cell Physiol.. 41. 244-250 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Touhara,k.: "Molecular mechanism of odor recognition : Biochemistry-"Cell Technology . 19. 111-119 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Fujiwara,H. et al.: "Expression of ecdysteroid-regulated genes is reduced-"Dev.Genes Evol.. 210. 120-128 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Namba,S., et al.: "In planta expression of a protein encoded by the extra-"Microbiology. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kataoka,H., et al.: "Dynamic regulation of prothoracic gland ecdysteroidogenesis-"Insect Biochem.Mol.Biol.. 30. 1079-1089 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mitani,H.,Shima,A. et al.: "A detailed linkage map of Medaka, Oryzias latipes-"Genetics. 154. 1773-1784 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sonocike,K.: "Probing Photosynthesis : Mecahnism, Regulation and Adaptation"Taylor & Francis,London. (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Minokawa,T.et al.: "Timing of the potential of micromere-descendants in echinoid embryos to induce endoderm differentiation"Dev.Growth Differ.. 41. 535-547 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kurokawa,D.et al.: "HpEts,an ets-related transcription factor implicated in primary mesenchyme cell differentiation of the --"Mechanisms of development. 80. 41-52 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sonoike,K.: "The different roles of chilling temperatures in the photoinhibition of photosystem I and photosystem II"J.Photochem.Photobiol.B:Biol.. 48. 136-141 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nakashima,K.et al.: "Synergistic signaling in fetal brain by STAT3-Smad1--"Science. 284. 479-482 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yamada,K.et al.: "NMDA receptor mediated Ca2+ responses in neurons --"Neurosci.Lett.. 264. 165-167 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nakashima,K.et al.: "Developmental requirement of gp 130 signaling in --"J.Neurosci.. 19. 5429-5434 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Touhara K.et al.: "Functional identification and reconstitution of an --"Proc.Natl.Acad.Sci.,U.S.A.. 96. 4040-4045 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kumagai,F.et al.: "Putative involvement of a 49 kDa protein in microtubule"Eur.J.Cell Biol.. 78. 109-116 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Takahashi,H.et al.: "Transcription analysis of the telomeric repeat-specific"Nucl.Acids Res.. 27. 2015-2021 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Satake,S.et al.: "Bombyxin secretion in the adult silkmoth Bombyx mori"J.Insect Physiol.. 45. 939-945 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nagata,K.et al.: "Prothoracicotropic activity of SBRPs, the insulin-like"Biochem.Biophys.Res.Commun.. 266. 575-578 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Satu,H.et al.: "Hypertonicity stimulates taurine uptake and transporter"Biochi.Biophys.Acta. 1419. 89-96 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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