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Comparative map of mammalian chromosomes for research on domestic and laboratory animals

Research Project

Project/Area Number 11490024
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 広領域
Research InstitutionOKAYAMA UNIVERSITY

Principal Investigator

SATO Katsunori (2001)  Faculty of Agricuiture, Okayama University, Professor, 農学部, 教授 (10033325)

国枝 哲夫 (1999-2000)  岡山大学, 大学院・自然科学研究科, 教授 (80178011)

Co-Investigator(Kenkyū-buntansha) OIKAWA Takuro  Faculty of Agricuiture, Okayama University, Associate Professor, 農学部, 助教授 (90160407)
KUNIEDA Tetsuo  Graduate Schoo of Natural Science and Technology, Okayama University, Professor, 大学院・自然科学研究科, 教授 (80178011)
佐藤 勝紀  岡山大学, 農学部, 教授 (10033325)
Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 2001: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2000: ¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 1999: ¥6,100,000 (Direct Cost: ¥6,100,000)
KeywordsComparative map / Linkage map / Radiation hybrid mapping / Hereditary disease / Cattle / Macaque / ラット
Research Abstract

The order of loci on chromosomes is conserved among mammalian species. Therefore, accumulated information on human and mouse genome can be used for genetic analysis of other mammals including domestic and laboratory animals, if correspondence between chromosoma, maps of human mouse and other mammals is revealed. In the present study, we established comparative maps of mammalian chromosomes by constructing linkage and radiation hybrid maps using functional genes which are conserved among mammalian species. In particular, we constructed the chromosome maps of bovine chromosome 1, 6, 27, and 28, macaque chromosome 1, 2, and 11, mouse chromosome 1, 7, and 15, and rat chromosome 7, 10, and 12 in which locus responsible particular phenotypes including hereditary diseases have been localized.
Consequently, we found the following evidences which demonstrate the correspondences between the chromosomes of the mammalian species.
Distal region of bovine chromosome 6 is corresponding to human chromosome 4p, but the order of the loci is inverted in the middle of this region.
Distal region of bovine chromosome 28 is corresponding to human chromosome 10.
Order of loci was conserved between entire region of macaque chromosome and human chromosome 1.
Macaque chromosome 2 had two regions which are corresponding to human chromosomes 7 and 21.
Precise correspondences between rat chromosomes 7 and 12, mouse chromosomes 15 and 5, and human chromosomes 12 and 7 were revealed.
These findings should be useful for identifying loci on these bovine, macaque and rat chromosomes which are responsible for phenotypes phenotypes.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (45 results)

All Other

All Publications (45 results)

  • [Publications] Yoneda, K.他: "Localization of a locus responsible for the bovine chondrodysplastic dwarfism (bcd) on chromosome 6"Mamm. Genome. 10. 97-600 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T.他: "Cloning of bovine LYST gene and identification of a missense mutation associated with Chediak-Higashi syndrome of cattle"Mamm. Genome. 10. 1146-1149 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nakagiri, H.他: "Allele-specific polymerase chain reaction for identifying carriers of Chediak-Higashi syndrome in Japanese black cattle"Anim.Sci.J.. 70. 372-374 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T.他: "A genetic linkage map of rat chromosome 9 with a new locus for variant activity of liver aldehyde oxidase"Exp.Anim. 48. 43-48 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Oikawa, T.他: "Variance of actual inbreeding derived from the number and variance of chromosome segment"J.Anim.Breed.Genet.. 116. 467-473 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Oikawa, T.他: "Approximation for variance of inbreeding coefficient due to mutiple paths of a pedigree"Anim.Sci.J.. 71. 348-352 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T., 他: "Localization of the locus responsible for Chediak-Higashi syndrome in cattle to bovine chromosome 28"Anim.Genet. 31. 87-90 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T.他: "The down-regulated in adenoma (Dra) gene encoding intestine-specific anion transporter maps to mouse chromosome 12"Exp.Anim. 49. 67-68 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohba, Y.他: "Homozygosity mapping of the locus responsible for renal tubular dysplasia of cattle on bovine chromosome 1"Mamm.Genome. 11. 316-319 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohba, Y.他: "A deletion of the paracellin-1 gene is responsible for renal tubular dysplasia in cattle"Genomics. 68. 229-236 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tsuji, T.他: "The insulin receptor-related receptor (Insrr) gene maps to mouse chromosome 3"Exp.Anim. 50. 359-360 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tsuji, T.他: "Cloning of the Promoter Region and Expression Analysis of Mouse Insulin Receptor-related Receptor (Irr) Gene"Anim.Sci J.. 72. 169-171 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sasazaki, S.他: "Phylogenic analysis of five beef cattle breeds using AFLP marker"Anim.Sci J.. 72. 172 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Matsushima, Y.他: "A mouse model of Waardenburg syndrome type 4 with a new spontaneous mutation of the endothelin-B receptor gene"Mamm.Genome. 13. 30-35 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takami, M.他: "The bovine fibroblast growth factor receptor 3 (FGFR3) gene eliminated as the locus responsible for bovine chondrodysplastic dwarfism based on mutation analysis and chromosomal mapping"Anim.Genet. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yoneda, K., Moritomo, Y., Takami, M., Hirata, S., Kikukawa, Y., and Kunieda, T.: "Localization of a locus responsible for the bovine chondrodysplastic dwarfism (bcd) on chromosome 6."Mamm. Genome. 10. 597-600 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T., Nakagiri, M., Takami, M., Ide, H., and Ogawa, H.: "Cloning of bovine LYST gene and identification of a missense mutation associated with Chediak-Higashi syndrome of cattle."Mamm. Genome. 10. 1146-1149 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nakagiri, H., Kunieda, T., Ide, H., Yoneda, K., Takami, M., and Ogawa, H.: "Alle le-specific polymerase chain reaction for identifying carriers of Chediak-Higashi syndrome in Japanese black cattle."Anim. Sci. J.. 70. 372-374 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda,T., Kobayashi,E., Tachibana,M., and Ikadai,H.: "A genetic linkage map of rat chromosome 9 with a new locus for variant activity of liver aldehyde oxidase"Exp. Anim.. 48. 43-45 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T., Ide, H., Nakagiri, M., Yoneda, K., Konfortov, B., and Ogawa, H.: "Localization of the locus responsible for Chediak-Higashi syndrome in cattle to bovine chromosome 28."Anim. Genet. 31. 87-90 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kunieda, T., Takahashi, K., Tsuji, T., Schweinfest, C.W. and Katoh, H.: "The down-regulated in adenoma (Dra) gene encoding intestine-specific anion transporter maps to mouse chromosome 12."Exp. Anim.. 49. 67-68 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohba, Y., Kitagawa, H., Kitoh, K., Asahina, S., Nishimori, K., Kazuhiro, K., Kunieda, T., Sasaki, Y.: "Homozygosity mapping of the locus responsible for renal tubular dysplasia of cattle on bovine chromosome 1."Mamnt, Genome. 11. 316-319 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Oikawa,T. and Sato, K.: "Variance of actual inbreeding derived from the number and variance of chromosome segment."J.Anim.Breed.Genet. 116. 467-473 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Oikawa, T., Kunieda, T., Sato, T.: "Approximation for variance of inbreeding coefficient due to mutiple paths of a pedigree."Anim. Sci. J.. 71. 348-352 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ohba, Y., Kitagawa, H., Kitoh, K., Sasaki, Y., Takami. M, Shinkai, Y., and Kunieda, T.: "A deletion of the paracellin-1 gene is responsible for renal tubular dysplasia in cattle."Genomics. 68. 229-236 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tsuji, T., Sato, K., Kunieda, T.: "Cloning of the Promoter Region and Expression Analysis of Mouse Insulin Receptor-related Receptor (Irr) Gene."Anim. SciJ.. 72. 169-171 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Tsuji, T., Sato, K., Kunieda, T.: "The insulin receptor-related receptor (Insrr) gene maps to mouse chromosome 3. 2001."Exp. Anim.. 50. 359-360 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Sasazaki, S., Lee, E.J., Mannen, H., Kunieda, T., Sakurai, T., Yamauchi, K., Yeo, J.S., Tsuji, S.: "Phylogenic analysis of five beef cattle breeds using AFLP marker."Anim. Sci. J.. 72. 172 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Matsushima, Y., Shinkai, Y., Kobayashi, Y., Sakamoto. M., Kunieda, T., Tachibana, Y.: "A mouse model of Waardenburg syndrome type 4 with a new spontaneous mutation of the endothelin- B receptor gene."Mamm. Genome. 13. 30-35 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Takami, M., K. Yoneda, K., Kobayashi, Y., Moritomo, Y., Kata, S. R., Womack, J. E., Kunieda, T.: "The bovine fibroblast growth factor receptor 3 (FGFR3) gene eliminated as the locus responsible for bovine chondrodysplastic dwarfism based on mutation analysis and chromosomalmapping."Anim. Genet.. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Matsushima, Y. et al.: "A mouse model of Waardenburg syndrome type 4 with a new spontaneous mutation of the endothelin-B receptor gene"Mamm.Genome. 13. 30-35 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tsuji, T et al.: "The insulin receptor-related receptor (Insrr) gene maps to mouse chromosome3"Exp.Anim. 50. 359-360 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Tsuji, Y. et la.: "Cloning of the Promoter Region and Expression Analysis of Mouse Insulin Receptor-related Receptor (Irr) Gene"Anim.Sci J.. 72. 169-171 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kunieda,T. 他: "Localization of the locus responsible for Chediak-Higashi syndrome in cattle to bovine chromosome 28."Anim,Genet. 31. 87-90 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kunieda,T 他: "The down-regulated in adenoma (Dra) gene encoding intestine-specific anion transporter maps to mouse chromosome 12."Exp.Anim.. 49. 67-68 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ohba,Y. 他: "Homozygosity mapping of the locus responsible for renal tubular dysplasia of cattle on bovine chromosome 1."Mamm.Genome. 11. 316-319 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ohba,Y. 他: "A deletion of the paracellin-1 gene is responsible for renal tubular dysplasia in cattle."Genomics. 68. 229-236 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Oikawa,T., 他: "Approximation for variance of inbreeding coefficient due to mutiple paths of a pedigree."Anim.Sci.J.. 71. 348-352 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 国枝哲夫 他: "家畜ゲノム解析と新たな家畜育種戦略"畜産技術協会. 542 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kunieda, T. 他: "A genetic linkage map of rat chromosome 9 with a new locus for variant"Exp. Anim.. 48. 43-45 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Noguchi, J. 他: "A locus responsible for arrest of spermatogenesis is located on rat"Mamm. Genome. 10. 189-190 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yoneda, K. 他: "Localization of a locus responsible for the bovine chondrodysplastic dwarfism (bcd)"Mamm. Genome. 10. 597-600 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Suzuki, H. 他: "A locus responsible for hypogonadism (hgn) is located on rat chromosome 10"Mamm. Genome. 10. 1106-1107 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kunieda, T. 他: "Cloning of bovine LYST gene and identification of a missense mutation"Mamm. Genome. 10. 1146-1149 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Nakagiri, M. 他: "Allele-specific polymerase chain reaction for identifying carriers of"Anim. Sci. J.,. 70. 372-374 (2000)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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