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Analysis of transfer genes of incompatibility group I plasmids

Research Project

Project/Area Number 11640622
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 遺伝
Research InstitutionTokyo Metropolitan University

Principal Investigator

KOMANO Teruya  Tokyo Metropolitan University Dept Biology Professor, 理学研究科, 教授 (00087131)

Co-Investigator(Kenkyū-buntansha) FURUYA Nobuhisa  Tokyo Metropolitan University Dept Biology Assistant, 理学研究科, 助手 (50244413)
Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2000: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1999: ¥2,100,000 (Direct Cost: ¥2,100,000)
KeywordsIncI plasmids / Conjugal transfer / Type IV pilus / Shufflon / oriT operon
Research Abstract

The 54-kb transfer region of IncI 1 plasmid R64 contains 49 genes. E.coli cells harboring R64 form two types of sex pili, a thin pilus and a thick pilus. Multiple DNA inversions of R64 shufflon select one of seven PilV adhesins, components of thin pili, with different C-terminal segments. The purpose of the present study is to elucidate the functions of various transfer genes in plasmids R64, ColIb-P9, R721 and R621a. 1. The products of several R64 pil and tra genes were overproduced and purified Antibodies against the pil and tra products were raised. The pilN product functions as a secretin forming a ring structure within the outer membrane. The pilQ product forms a multimer and exhibits ATPase activity responsible for thin pilus biogenesis. Intracellular localization of pilKLMOPRT and traMN products were determined. 2. DNA sequence of nonconserved arm of asymmetric shufflon recombination sites greatly affected their inversion frequencies. Deletion of an artificial shufflon segment containing symmetric recombination site was observed. Specific binding of lipopolysaccharide of recipient cell envelope to various PilV adhesins was demonstrated by blotting experiments. 3. Many pilS and pilV mutants were isolated to reveal relationship between structure and function of their products and also interaction of their products. 4. The R64 oriT operon consists of oriT sequence and nikAB genes. NikAB proteins were purified and their interaction with oriT sequence was analyzed. 5. Transfer region of IncIγ plasmid R621a was found to be similar to that of R64, although the structue of their traY and exc genes are different each other. R621a and R64 were found to belong to different exclusion groups.

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] Komano et al.: "The transfer region of Incl1 plasmid R64 : similarities between R64 tra and Leqionella icm/dot genes."Molecular Microbiology. 35. 1348-1359 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Furuya and Komano: "Initiation and termination of DNA transfer during conjugation of Incl1 plasmid R64 : the role of two sets of inverted repeat sequences."Journal of Bacteriology. 182. 3191-3196 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Gyohda and Komano: "Purification and characterization of the R64 shufflon-specific recombinase."Journal of Bacteriology. 182. 2782-2792 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ishiwa and Komano: "The lipopolysaccharide of recipient cells is a specific receptor for PilV proteins, selected by shufflon DNA rearrangement."Molecular and General Genetics. 263. 159-164 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sakai and Komano: "The pilL and pilN genes of Incl1 plasmids R64 and Collb-P9 encode outer membrane lipoproteins responsible for thin pilus biogenesis."Plasmid. 43. 149-152 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Komano: "Shufflons : multiple inversion systems and integrons."Annual Review of Genetics. 33. 171-191 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yoshida, T., S.-R.Kim, and T.Komano.: "Twelve pil genes are required for biogenesis of the R64 thin pilus."J.Bacteriol.. 181. 2038-2043 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Komano, T.: "Shufflons : multiple inversion systems and integrons."Annu.Rev.Genet.. 33. 171-191 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Akaba, S., M.Seo, N.Dohmae, K.Takio, H.Sekimoto, Y.Kamiya, N.Furuya, T.Komano, and T.Koshiba.: "Production of homo-and hetero-dimeric isozymes from two aldehyde oxidase genes of Arabidopsis thaliana."J.Biochem.. 126. 395-400 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sakai, D., and T.Komano.: "The pilL and pilN genes of IncI1 plasmids R64 and ColIb-P9 encode outer membrane lipoproteins responsible for thin pilus biogenesis"Plasmid. 43. 149-152 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Ishiwa, A., and T.Komano.: "The lipopolysaccharide of recipient cells is a specific receptor for PilV proteins, selected by shufflon DNA rearrangement, in liquid matings with donors bearing the R64 plasmid."Mol.Gen.Genet.. 263. 159-164 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Koiwai, H., S.Akaba, M.Seo, T.Komano, and T.Koshiba.: "Functional expression of two Arabidopsis aldehyde oxidases in the yeast Pichia pastoris"J.Biochem.. 127. 659-664 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Komano, T., T.Yoshida, K.Narahara, and N.Furuya.: "The transfer region of IncI1 plasmid R64 : similarities between R64 tra and Legionella icm/dot genes."Mol.Microbiol.. 35. 1348-1359 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Gyohda, A., and T.Komano.: "Purification and characterization of the R64 shufflon-specific recombinase."J.Bacteriol.. 182. 2787-2792 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Furuya, N., and T.Komano: "Initiation and termination of DNA transfer during conjugation of IncI1 plasmid R64 : the role of two sets of inverted repeat sequences within oriT in the termination of R64 transfer."J.Bacteriol.. 182. 3191-3196 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Sakamoto, N., K.Fukuda, K.Watanuki, D.Sakai, T.Komano, P.J.Scotting, and S.Yasugi: "Role for cGATA-5 in transcriptional regulation of the embryonic chicken pepsinogen gene by epitherial-mesenchymal interactions in the developing chicken stomach."Dev.Biol.. 223. 103-113 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Seo, M., H.Koiwai, S.Akaba, T.Komano, T.Oritani, Y.Kamiya, and T.Koshiba.: "Abscisic aldehyde oxidase in leaves of Arabidopsis thaliana."Plant J.. 23. 481-488 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Komano et al.: "The transfer region of Incl1 plasmid R64 : similarities between R64 tra and Leqionella icm/dot genes."Molecular Microbiology. 35. 1348-1359 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Furuya and Komano: "Initiation and termination of DNA transfer during conjugation of lncl1 plasmid R64 : the role of two sets of inverted repeat sequences."Journal of Bacteriology. 182. 3191-3196 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Gyohda and Komano: "Purification and characterization of the R64 shufflon-specific recombinase."Journal of Bacteriology. 182. 2782-2792 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ishiwa and Komano: "The lipopolysacchaide of recipient cells is a specific receptor for PilV proteins, selected by shufflon DNA rearrangement."Molecular and General Genetics. 263. 159-164 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Sakai and Komano: "The pilL and pilN genes of Incl1 plasmids R64 and Collb-P9 encode outer membrane lipoproteins responsible for thin pilus biogenesis."Plasmid. 43. 149-152 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Komano: "Shufflons : multiple inversion systems and integrons."Annual Review of Genetics. 33. 171-191 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] T.Komano: "Shufflons:multiple inversion systems and integrons."Annual Review of Genetics. 33. 171-191 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Yoshida et al.: "Twelve pilgenes are required for biogenesis of the R64 thin pilus."Journal of Bacteriology. 181. 2038-2043 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sakai and Komano: "The pilL and pilN genes of lncl1 plasmids R64 and Collb-P9 encode outer membrane lipoproteins responsible for thin pilus biogenesis."Plasmid. 43. 149-152 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ishiwa and Komano: "Lipopolysaccharide of recipient cells is a specific receptor tor PilV proteins selected by shufflon DNA rearrangement in R64 liquid mating."Molecular and General Genetics. (in press). (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] T.Komano et al.: "The transfer region of lncl1 plasmid R64:similarities between R64 tra and Legionellaicm/dot genes."Molecular Microbiology. 35. 1348-1359 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Gyohda and Komano: "Purification and characterization of the R64 shufflon-specitic recombinase."Journal of Bacteriology. 182(in press). (2000)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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