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Characterization of double-branded RNAbinding proteins in plants

Research Project

Project/Area Number 11640642
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 植物生理
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

FUKUGARA Toshiyuki  Tokyo.University of Agriculture and Technology, Faculty of Agriculture, Associate professor, 農学部, 助教授 (90228924)

Project Period (FY) 1999 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2001: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2000: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1999: ¥1,200,000 (Direct Cost: ¥1,200,000)
KeywordsDouble-stranded RNA (dsRNA) / DsRNA-binding protein / DsRNA-binding domain / Arabidopsis thaliana / Westwestern / Northwestern / Rice / Protein-proteininteraction / 形質転換体 / 遺伝子破壞株 / ノースウエタン法
Research Abstract

We have found 12 putative genes for double-stranded RNA (dsKNA)-binding proteins (DRBPs) in Arabidopsis thaliana, all of which contain the conserved dsRNA-binding domain (DRBD) consisting of about 70 amino acid residues. We have characterized five putative DRBPs : ADB1, ADB2 and ADB3 from A. thaliana and ODB1 from rice that are about 400 amino acid residues in length with two DRBDs at their N-terminal regions, and CAP that has two putative RNaselH domains in the N-terminal region and two putative DRBDs in the C-terminal regions.
By Northwestern assays, the recombinant proteins of these five genes had the binding activity specific for dsRNAs, but strength of their binding activities were different to each other. The dsRNA-binding activity ofADB2 was weaker than those of the other four proteins. Furthermore, their binding activites to 100 bp dsRNAwas similarto those to 500 bp dsRNAbutthose to 25 bp dsRNA was very weak.
Interaction between these DRBPs were analyzed by Westwestern assay. ADB 1 interacted with CAF via its DRBDs and their binding activity between ADB1 and CAP was greater than its between ADB1 and ADB1. ADB2 and ADB3 also bound to ADB1, CAF and themselves. These DRBPs may interact to each other in vivo.

Report

(4 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (20 results)

All Other

All Publications (20 results)

  • [Publications] Toshiyuki Fukuhara: "The expression of a Vp1-like gene and seed dormancy in Mesembryanthemum crystallinum"Genes and Genetic Systems. 75. 203-209 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Mark J. Gibbs: "Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus"Journal of General Virology. 81. 227-233 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hideki Horiuchi: "RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice"Plant and Cell Physiology. 42. 197-203 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Akiko Harada: "Plasma membrane H^+-ATPase under control of photosynthesis in Vallisneria leaves. II Presence of putative isogenes and a protein equipped with a C-terminal autoinhibitory domain"Planta. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] 福原敏行: "植物の二本鎖RNA-RNAウイルスの祖先型か退行進化の結末か?"植物感染生理談話会論文集. 37. 73-82 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Gibbs M.J., Koga R., Moriyama H., Pfeiffer P., Fukuhara T: "Phylogenetic analysis of some large double-stranded KNA replicons from plants suggests they evolved from a defective single-stranded RNA virus"J Gen. Virol. 81. 227-233 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuhara T. and Bohnert H.J.: "The expression of a Vp1-like gene and seed dormancy in Mesembryanthemum crystallinum"Genes Genet. Syst.. 75. 203-209 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Horiuchi H., Udagawa T., Koga K., Moriyama H., Fukuhara T.: "RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in nce"Plant Cell Physiol.. 42. 197-203 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Fukuhara T., Natsuaki T: "Double-stranded RNAs in plants : the ancestor of plant viruses or the result of regressive evolution?"PSJ Plant-Microbe Interactions Symposium Report. 37. 73-82 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Harada A, Fukuhara T., Takagi S.: "Plasma membrane H^+_-ATPase under control of photosynthesis in Vallisneria leaves. II Presence of putative isogenes and a protein equipped with a C-tenminal autoinhibitory domain"Planta. in press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Hideki Horiuchi: "RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice."Plant and Cell Physiology. 42-2. 197-203 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Akiko Harada: "Plasma membrane H^+ -ATPase under control of photosynthesis in Vallisneria leaves. II Presence of putative isogenes and a protein equipped with a C-terminal autoinhibitory domain."Planta. (印刷中).

    • Related Report
      2001 Annual Research Report
  • [Publications] Toshiyuki Fukuhara: "The expression of a Vpl-like gene and seed dormancy in Mesembryanthemum crystallinum."Genes and Genetic Systems. 75. 203-209 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hideki Horiuchi: "RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice."Plant and Cell Physiology. 42・2. 197-203 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Mark Gibbs: "Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus."Journal of General Virology. 81. 227-233 (2000)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hiromitsu Moriyama: "Molecular characterization of two endogenous double-stranded RNAs in rice and their inheritance by interspecific hybrids."Journal of Biological Chemistry. 274・11. 6882-6888 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Toshiyuki Fukuhara: "Double-stranded RNA in rice."Journal of Plant Research. 112. 131-138 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Hiromitsu Moriyama: "Unusual inheritance of evolutionarily-related double-stranded RNAs in interspecific hybrid between rice plants Oryza sativa and Oryza rufipogon."Plant Molecular Biology. 39. 1127-1136 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Saori Miyazaki: "Tissue- and environmental response-specific expression of 10 PP2C transcripts in Mesembryanthemum crystallinum."Molecular & General Genetics. 261・2. 307-316 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Toshiyuki Fukuhara: "Expression of Vpl and water channel proteins during seed germination."Plant & Cell Environment. 22. 417-424 (1999)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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