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Function of a short spacer between rice EPSP synthase and rps20 genes.

Research Project

Project/Area Number 11660001
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

KISHIMA Yuji  Hokkaido Univ., Grad.School of Agr., Associate Prof., 大学院・農学研究科, 助教授 (60192556)

Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 2000: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 1999: ¥1,800,000 (Direct Cost: ¥1,800,000)
Keywordsrice / 5-enolpyruvylshikimate-3-phosphate (EPSP synthase) / ribosome protein S 20 (rps20) / short-spacer / Antisense RNA / mutation rate / s-enolpyruvylshikimate-3-phosphate(epsp)合成酵素遺伝子 / 種分化
Research Abstract

We mapped the fragments with sequence (s) expressed in the rice callus onto a physical map for a 328-kb BAC contig around the rice waxy locus. Among the hybridized fragments, we attempted to characterize strongly hybridized fragments located in a region about 45 kb downstream of waxy. The fragments were found to contain two housekeeping genes encoding 5-enolpyruvylshikimate-3-phosphate synthase (EPSPs) and ribosomal protein small subunit 20 (rps20). Interestingly, these housekeeping genes are adjoined, with only a 303-bp spacer, and are directed in a tail-to-tail orientation. Nearly-full-length cDNA clones of the two genes were obtained by screening the callus cDNA library. A clone for the EPSPs gene possessed an open reading frame of 1683 bp encoding a deduced 561-amino-acid (aa) polypeptide that is the first expressed gene identified in rice using this method. EPSPs is a key enzynae on the shikimate pathway and is localized in the plastids of higher plants. This enzyme is known to be … More targeted by glyphosate, which has been employed as a nonselective herbicide. A gene for the rice rps20 peptide had previously been isolated, and our rps2O cDNA clone completely matched the registered sequence for this peptide. Northern blotting analyses were conducted using blots of total RNAs extracted from roots, seedlings, spikelets and anthers of Japonica and Indica rice strains. The 2.2-kb transcript of the EPSPs gene was easily detected in RNA samples from roots, seedlings and spikelets, but not the RNA from anthers. A 0.75-kb rps20 transcript was detected in all the tissues we examined, although the expression in roots from both rice strains was very weak. We have examined an extent of the transcript of either gene. These transcripts proceeded beyond the spacer ; the expression of the other gene might be modified by the antisense RNA from the opposite gene, resulting in double-stranded RNA, which might act as a trigger for RNA degradation in the mechanism called post-transcriptional gene silencing. The short spacer found here is uncommon in the nuclear gene organization in higher plants. This segment may have evolutionary implications about spacer expansion or contraction in the plant nuclear genome, and may play a role in gene regulation caused by the opposite gene transcript. Less

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] K.Kitamura: "Position effect of the excision frequency of the Antirrhinum transposon Tam3 : Implication for position-dependent methylation degree in the ends of the element."Plant Molecular Biology. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano: "Structural differences in the vicinity of the waxy locus among the Oryza species with the AA-genome : identification of variable regions."Theoretical and Applied Genetics. 100. 376-383 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano: "DNA sequences homologous to rice tungro bacilliform virus (RTBV) present in the rice genome."Rice Genetics Newsletter. 17. 103-105 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano: "Genomic organization of the 260 kb surrounding the waxy locus in a Japonica rice."Genome. 42. 1121-1126 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] S.Yamashita: "Resistance to gap repair of the transposon Tam3 in Antirrhinum majus : a role of the end regions."Genetics. 153. 1899-1908 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Kishima: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies abel to transpose."Plant Molecular Biology. 39. 299-308 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Sato: "Rice EPSP synthase gene resides 45-kb downstream of the Waxy gene."Rice Genetics Newsletter. 16. 108-110 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] K.Kitamura et al.: "Position effect of the excision frequency of the Antirrhinum transposon Tam3 : Implication for position-dependent methylation degree in the ends of the element."Plant Molecular Biology. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano et al.: "Structural differences in the vicinity of the waxy locus among the Oryza species with the AA-genome : identification of variable regions."Theoretical and Applied Genetics. 100. 376-383 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano et al.: "DNA sequences homologous to rice tungro bacilliform virus (RTBV) present in the rice genome."Rice Genetics Newsletter. 17. 103-105 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano et al.: "Genomic organization of the 260 kb surrounding the waxy locus in a Japonica rice."Genome. 42. 1121-1126 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] S.Yamashita et al.: "Resistance to gap repair of the transposon Tam3 in Antirrhinum majus : a role of the end regions."Genetics. 153. 1899-1908 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Y.Kishima et al.: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies abel to transpose."Plant Molecular Biology. 39. 299-308 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Sato et al.: "Rice EPSP synthase gene resides 45-kb downstream of the Waxy gene."Rice Genetics Newsletter. 16. 108-110 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Nagano: "Structural differences in the vicinity of the waxy locus among the Oryza species with the AA-genome : identification of variable regions."Theoretical and Applied Genetics. 100. 376-383 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Nagano: "DNA sequences homologous to rice tungro bacilliform virus (RTBV) present in the rice genome."Rice Genetics Newsletter. 17. 103-105 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] K.Kitamura: "Position effect of the excision frequency of the Antirrhinum transposon Tam3 : lmplications for degree of position-dependent methylation in the ends of the element."Plant Molecular Biology. (in press).

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Nagano: "Structural differences in the vicinity of the waxy locus among Oryza species with AA-genome : identification of variable regions"Theoretical and Applied Genetics. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] H.Nagano: "Genomic organization of the 260kb surrounding the waxy locus in a Japonica rice"Genome. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] S.Yamashita: "Resistance to gap repair of the transposon Tam3 in Antirrhinum majus : A role of the end region"Genetics. 153. 1899-1908 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Y.Kishima: "Structural conservation of the transposon Tam3 family in Antirrhinum majus and estimation of the number of copies able transpose"Plant Molecular Biology. 39. 299-308 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] H.Nagano: "Organization of the 260kb of the vicinity of the waxy locus"Rice Genetics Newsletter. 15. 167-169 (1998)

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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