• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Time-resolved X-ray crystallographic studies of enzyme reaction

Research Project

Project/Area Number 11660115
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionFukui Prefectural University

Principal Investigator

ODA Jyun'ichi  Fukui Prefectural University, Bioscience, Professor, 生物資源学研究科, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) HIBI Takao  Fukui Prefectural University, Bioscience, instructor, 生物資源学部, 講師 (00285181)
Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2000: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 1999: ¥3,300,000 (Direct Cost: ¥3,300,000)
Keywordstoropinone / time-resolved x-ray cystallography / Laue method / flow cell / tropane alkaloids / γ-glutamylcysteine / 時分割X線結晶構造解析 / 時分割構造解析 / グルタチオン / トロピノン還元酵素 / γーグルタミルシステイ合成酵素 / ラウ工法
Research Abstract

Tropinone reductase-II(TR-II, EC 1. 1. 1. 236)catalyzes an NADPH-dependent reduction of the 3-carbonyl group of tropinone to a β-hydroxyl group, and produces pseudotropine(ψ-tropine). γ-Glutamylcysteine synthetase(γGCS), which catalyzes the ATP-dependent coupling of L-Glu and L-Cys to form a glutathione precursor γ-L-Glu-Cys, is the rate-limiting enzyme in glutathione biosynthesis. In order to capture their structures just before the reaction occurs, we tried to determine their structures and apply two techniques for time-resolved crystallography, flow cell and Laue diffraction. Here we report(1)time-resolved structural analysis of TR-II and(2)X-ray crystallographic study on γGCS from Escherichia coli B.
(1)A TR-II crystal for X-ray diffraction experiment was mounted in a flow cell(0.7 mm in diameter). A solution containing 0.1 M HEPES-Na, pH 7.5, 2 M Li_2SO_4, 4 mM NADPH, 100 mM tropinone, 1 mM DTT wa passed across the crystal at a rate of 1 ml/min during data collection. Laue diffraction data were collected at BL-18B station, Photon Factory, using large imaging-plates with 30 msec exposure. It gave good Laue diffraction patterns despite of the large unit cell of the crystal. The Laue data showed clear electron densities corresponding to the substrate and cofactor by difference Fourier analysis. The structure of TR-II-NADP^+-tropinone complex indicated that the direction of tropinone binding in the active-site changed just before the reaction started, and it gave an advantage in the nucleophilic attack of hydride anion to the substrate.
(2)Native crystals of γGCS grew to maximum dimensions of 0.2×0.2×0.1 mm. These crystal were of good quality, diffracting to 2.8 Å resolution or better. Processing data of γGCS crystals revealed a hexagonal crystal system with unit-cell parameters a =b =326.7, c =103.9 Å. The space group of this crystal was determined to be R3. Further data analysis is now underway.

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (16 results)

All Other

All Publications (16 results)

  • [Publications] T.Hibi: "Structural analysis of γ-glutamylcysteine synthetase from Echerichia coli B"Spring-8 User Experimental Report. 4. 175 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 山下敦子: "トロピノン還元酵素II : 補酵素 : 基質複合体のラウエ法による立体構造解析"日本結晶化学会誌. 52 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] A. Yamashita: "Time-resolved x-ray crystallography of tropinone reductase II by laue diffraction"Photon Factory Activity Report. 16. 230 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Koiwa : "Crystal structure of Tobacco PR-5d protein at 1.8A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins"Journal of Molecular Biology. 286. 1137-1145 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] N.Tokutake: "The absolute configuration of an intermediate cyclic sulfoximine in the asymmetric synthesis of transition-state analog inhibitors of γ-glutamylcysteine"Acta Crystallography. C55. 1598-1599 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Hibi: "Structural analysis of γ-glutamylcyteine synthetase from Echerichia coli B"Spring-8 User Exp.Report. 4. 175 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] A.Yamashita: "Time-resolved x-ray crystallography of tropinone reductase II by laue diffraction"Photon Factory Activity Report. 16. 196 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] H.Koiwa: "Crystal structure of Tobacco PR-5d protein at 1.8 Å resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins"J.Mol.Biol.. 286. 1137-1145 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] N.Tokutake: "The absolute configuration of an intermediate cyclic sulfoximine in the asymmetric synthesis of transition-state analog inhibitors of γ-glutamylcysteine synthetase"Acta Crystallogr.. C55. 1598-1599 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] T.Hibi: "Structural analysis of γ-glutamylcysteine synthetase from Escherichia coli B"Spring-8 User Experimental Report. 4. 175 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 山下敦子: "トロピノン還元酵素-II:補酵素:基質複合体のラウエ法による立体構造解析"日本結晶化学会誌 講演要旨集 2000. 52 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Yamashita: "Time-Resolved X-ray crystallography of tropinone reductase II by laue diffraction."Photon Factory Activity Report. 16. 230 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] H.Koiwa: "Crystal structure of Tobacco PR-5d protein at 1.8Å resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins"Journal of Molecular Biology. 286. 1137-1145 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] N.Tokutake: "The absolute configuration of an intermediate cyclic sulfoximine in the asymmetric synthesis of transition-state analog inhibitors of γ-glutamylcysteine synthetase."Acta Crystallography. C55. 1598-1599 (1999)

    • Related Report
      2000 Annual Research Report
  • [Publications] A.Yamashita: "Time-resolved x-ray crystallography of tropinone reductase II by laue diffraction"Photon Factory Activity Report. 16・partB. 196 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] H. Kato: "Time-resolved x-ray crystallography of nucleotide-dependent enzymes by laue diffraction"Photon Factory Activity Report. 16・partB. 230 (1999)

    • Related Report
      1999 Annual Research Report

URL: 

Published: 1999-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi