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Studies ofmicrobial flora in the subtropics and collection of their cultures

Research Project

Project/Area Number 11660326
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物資源科学
Research InstitutionInstitute for Fermentation, Osaka (IFO)

Principal Investigator

NAKAGIRI Akira  IFO, Mycology Lab., Senior Research Head, 真菌研究室, 主席研究員 (70198050)

Co-Investigator(Kenkyū-buntansha) NAKAGAWA Yasuyoshi  IFO, Bacteriology Lab., Senior Researcher, 細菌研究室, 主任研究員 (70260172)
OKANE Izumi  IFO, Mycology Lab., Senior Researcher, 真菌研究室, 主任研究員 (60260171)
ITO Tadayoshi  IFO, Mycology Lab., Senior Research Head, 真菌研究室, 主席研究員 (60232451)
UEDA Kumiko (NISHIMURA Kumiko)  IFO, Yeasts Lab., Researcher, 酵母研究室, 研究員 (20270572)
TAMURA Tomohiko  IFO, Actinomycetology Lab., Senior Researcher, 放射菌研究室, 主任研究員 (10236755)
Project Period (FY) 1999 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2002: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2001: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2000: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1999: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywordssubtropics / microbial flora / biodiversity / culture collection / genetic resource / microbial taxonomy / 遺伝子資源
Research Abstract

This study was aimed to investigate flora of microbes, such as fungi, yeasts, bacteria and actinomycetes, inhabiting subtropical regions in Japan and to isolate the strains for depositing them into the collection, and also to understand their properties adapting to the subtropical environments by studying their life cycle and ecology. The research sites were the South-West Islands (Amami Is., Okinawa Is., Ishigaki Is., and Iriomote Is.) of Japan, where we collected samples regularly from 1999 to 2002. We targeted 1) aquatic fungi inhabiting fallen leaves, seaweeds, etc. at mangroves and seashore, 2) soil fungi inhabiting forest, fields and mangrove rhizosphere, 3) endophytic fungi living within living leaves, 3) yeasts inhabiting soil, flowers, fruits, etc., 4) marine bacteria (especially Cytophaga-Flavobacterium group), and 5) rare actinomycetes inhabiting soil. We obtained a number of isolates including many undescribed species, some of which we have already described as new taxa. Ecological study on some of the isolated fungi revealed that subtropical strains have different properties from those of the tropical strains of the same species, which showed specificity adapting to the subtropical environmental conditions. After identification of the obtained isolates, they were deposited the culture collection of IFO, an open-public culture collection, for public use for basic and applied science. Further taxonomic studies, which are now going on, will result in description of new taxa and also in contribution to a progress in microbial taxonomy.

Report

(5 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Nakagawa, Y.: "Phylogenetic structure of the genera Flexibacter, Flexithrix and Microscilla deduced from 16SrRNA sequence analysis"J. Gen. Appl. Microbiol.. 48. 155-165 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ueda-Nishimura, K.: "Species distinction of the ascomycetous heterothallic yeast-like fungus, Stephanoascus ciferri complex : description of Canadida allociferri sp. nov. and reinstatement of Candida mucifera Kockova-Kratochvilova et Slavikova"Int. J. Syst. Evol. Microbiol.. 52. 463-471 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagiri, A.: "A new Halophytophthora species, H. porrigovesica, from subtropical and tropical mangroves"Mycoscience. 42. 33-41 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ito, Tad.: "Two species of Acremonium section Acremonium : A. borodinense sp. nov. and A. cavaraeanum"Mycol. Res.. 104. 77-80 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Okane, I.: "Surculiseries rugispora gen. et sp. nov., a new endophytic mitosporic fungus from leaves of Bruguiera gymnorrhiza"Mycoscience. 42. 115-122 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagiri, A.: "Halophytophthora species from tropical and subtropical mangroves : A review of their characteristics"Fungi in marine environments. pp. 1-14. Ed. by K.D.Hyde, Fungal Diversity Press, Hong Kong.. 397 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagawa, Y.: "Phylogenetic structure of the genera Flexibacter, Flexithrix and Microscilla deduced from 16SrRNA sequence analysis."J. Gen. Appl MicrobioL. 48. 155-165 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ueda-Nishimura, K.: "Species distinction of the ascomycetous heterothallic yeast-like fungus , Stephanoascus ciferri complex: description of Candida allociferri sp. nov. and reinstatement of Candida mucifera Kockova-Kratochvilova et Slavikova."Int. J. Syst Evol. Microbiol. 52. 463-474 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagiri, A.: "A new Halophytophthora species, H.porrigovesica, from subtropical and tropical mangroves."Mycoscience. 42. 33-41 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ito, Tad.: "Two species of Acremonium section Acremonium: A. borodinense sp. nov. and A. cavaraeanum."Mycol. Res.. 104. 77-80 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Okane, I.: "Surculiseries rugispora gen. et sp. nov., a new endophytic mitosporic fungus from leaves of Bruguiera gymnorrhiza."Mycoscience. 42. 115-122 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagiri, A., Ed. by K. D.Hyde: "Halophytophthora species from tropical and subtropical mangroves : A review of their characteristics."Fungi in marine environments, Fungal Diversity Press, Hong Kong.. 1-14 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nakagawa, Y., Sakane, T., Suzuki, M., Hatano, K.: "Phylogenetic structure of the genera Flexibacter, Flexithrix and Microscilla deduced from 16SrRNA sequence analysis"J. Gen. Appl. Microbiol.. 48. 155-165 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ueda-Nishimura, K. Mikata, K.: "Species distinction of the ascomycetous heterothallic yeast-like fungus, Stephanoascus ciferri complex : description of Candida allociferri sp. nov. and reinstatement of Candida mucifera Kockova-Kratochvilova et Slavikova"Int. J. Syst. Evol. Microbiol.. 52. 463-471 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nakagiri, A.: "Fungi in marine environments. pp.1-14. Ed. by K. D. Hyde, Fungal Diversity Press, Hong Kong."Halophytophthora species from tropical and subtropical mangroves : A review of their characteristics.. 397 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nakagiri, A., Ito, Tad., Manoch, L., Tanticharoen, M.: "A new Halophytophthora species, H. porrigovesica, from subtropical and tropical mangroves"Mycoscience. 42. 33-41 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Okane, I., Nakagiri, A., Ito, T.: "Surculiseries rugispora gen. et sp. nov., a new endophytic mitosporic fungus from leaves of Bruguiera gymnorrhiza"Mycoscience. 42. 115-122 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Mikata, K., Ueda-Nishimura, K., Hisatomi, T.: "Three new species of Saccharomyces sensu lato van der Walt from Yaku Island in Japan : Saccharomyces naganishii sp. nov., Saccharomyces humaticus sp. nov. and Saccharomyces yakushimaensis sp. nov."Int.J.Syst.Evol.Microbiol.. 51. 2189-2198 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nakagiri,A.: "Ecology and diversity of Halophytophthora species"Fungal Diversity. 5. 153-164 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nakagiri,A.,Okane,I.and Ito,Tad.: "Sexual compatibility and asexual reproduction of Tremellochaete japonica"IFO Research Communications. 20. 34-40 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Okane,I.,Nakagiri,A.and Ito,Tad.: "Assemblages of endophytic fungi on Bruguiera gymnorrhiza in the Shiira River basin, Iriomote Is."IFO Research Communications. 20. 41-49 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ito,Tad.,Okane,I.and Nakagiri,A.: "Descriptive catalogue of IFO fungus collection XVII.108.Calcarisporiella thermophila (Evans) de Hoog"IFO Research Communications. 20. 101-103 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Nakagawa,Y.,Suzuki,M.and Hatano,K.: "Phylogenetic diversity of Cytophaga-like strains isolated from the sub-tropical zone of Japan"IFO Research Communications. 20. 61-71 (2001)

    • Related Report
      2000 Annual Research Report

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Published: 1999-04-01   Modified: 2021-11-22  

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