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Functional analysis of XAB2 involved in transcription and DNA repair

Research Project

Project/Area Number 11680679
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionOsaka University

Principal Investigator

NAKATSU Yoshimichi  INSTITUTE FOR MOLECULAR AND CELLULAR BIOLOGY, assistant professor, 細胞生体工学センター, 助教授 (00207820)

Project Period (FY) 1999 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2000: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1999: ¥1,900,000 (Direct Cost: ¥1,900,000)
KeywordsXAB2 / XPA / DNA repair / TCR / transcription / RNA / knockout mice / embryonic lethal / CSB / RNA polymeraseII / ヌクレオチド除去修復 / Gene Targeting
Research Abstract

Flag-tagged XAB2 was expressed in HeLa cells and affinity-purified with anti-Flag antibody. Flag-XAB2 was co-purified with at least 20 polypeptides. Mass spectrum analysis of them suggested that XAB2 might reside in complexes involved in cell-cycle control and pre-mRNA processing. Further purification of the complex revealed that XAB2 was tightly associated with 5 proteins. Two of five are orthologs of yeast proteins involved in splicing in Saccharomyces cerevisiae. One is a cyclophilin with RNA-binding motifs. The remainders are currently unidentified proteins. These results, combined with the fact that XAB2 was co-immunoprecipitated with RNA polymerase II large subunit, suggested that XAB2 might be a component of "RNA factory" involving transcription-coupled repair, pre-mRNA processing, cell-cycle control as well as transcription. To study the functions of XAB2 in vivo, we generated two mutation alleles in embryonic stem cells using gene-targeting technique. One is a null allele that … More has a deletion of the region containing promoter and exon 1-4 of XAB2 gene. The other is a carboxy-terminal deletion (cd) allele carrying a stop codon in exon 15 of the XAB2 gene. Both types of heterozygous cells and mice are apparently normal. However, when intercrossing heterozygotes, neither homozygous XAB2 (-/-) nor XAB2 (cd/cd) mice were found in the offspring and 13.5-day embryos. Analyses of the 3.5-day embryos obtained from heterozygous intercrosses showed that XAB2 (-/-) or XAB2 (cd/cd) morula were found in a ratio expected for a Mendelian distribution, whereas neither XAB2 (-/-) nor XAB2 (cd/cd) blastocysts were detected despite the presence of wildtype and heterozygous blastocysts. Furthermore, attempts to disrupt the remaining wildtype XAB2 allele in XAB2 (+/cd) ES cells failed, suggesting that the XAB2 gene is essential for growth of ES cells. These results, consistent with the involvement of XAB2 in transcription, indicate the essential function of XAB2 in mammals and in cellular viability. Less

Report

(3 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] Minoru Ichikawa: "Decreased UV sensitivity, mismatch repair activity and abnormal cell cycle checkpoints in skin cancer cell lines derived from UVB-irradiated XPA-deficient mice"Mutation Research. 459. 285-298 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hiroaki Murai: "Studies of in vivo mutations in rpsL transgene in UVB-irradiated epidermis of XPA-deficient mice"Mutation Research. 450. 181-192 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yoshimichi Nakatsu: "XAB2, a novel tetratricopeptide repeat protein, involved in transcription-coupled DNA repair and transcription"J.Biol.Chem.. 275. 34931-34937 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Masahiko Nitta: "A novel cytoplasmic GTPase XAB1 interacts with DNA repair protein XPA"Nucleic Acid Research. 28. 4212-4218 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Minoru Ichikawa: "Decreased UV sensitivity, mismatch repair activity and abnormal cell cycle checkpoints in skin cancer cell lines derived from UVB-irradiated XPA-deficient mice"Mutation Research. 459. 285-298 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Hiroaki Murai: "Studies of in vivo mutations in rpsLtransgene in UVB-irradiated epidermis of XPA-deficient mice"Mutation Research. 450. 181-192 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yoshimichi Nakatsu: "XAB2, a novel tetratricopeptide repeat protein, involved in transcription-coupled DNA repair and transcription"J.Biol.Chem.. 275. 34931-34937 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Masahiko Nitta: "A novel cytoplasmic GTPase XAB1 interacts with DNA repair protein XPA"Nucleic Acid Research. 28. 4212-4218 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Minoru Ichikawa: "Decreased UV sensitivity, mismatch repair activity and abnormal cell cycle checkpoints in skin cancer cell lines derived from UVB-irradiated XPA-deficient mice"Mutation Research. 459. 285-298 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Hiroaki Murai: "Studies of in vivo mutations in rpsL transgene in UVB-irradiated epidermis of XPA-deficient mice"Mutation Research. 450. 181-192 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yoshimichi Nakatsu: "XAB2, a novel tetratricopeptide repeat protein, involved in transcription-coupled DNA repair and transcription"J.Biol.Chem.. 275. 34931-34937 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Masahiko Nitta: "A novel cytoplasmic GTPase XAB1 interacts with DNA repair protein XPA"Nucleic Acid Research. 28. 4212-4218 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ichikawa Minoru: "Decreased UV sensitivity,mismatch repair activity and abnormal cell cycle checkpoint in skin cancer cell lines derived from UVB-irradiated XPA-deferent mice"Mutation Research. (in press).

    • Related Report
      1999 Annual Research Report
  • [Publications] Murai Hiroaki: "Studies of in vivo mutations in rpsL transgene in UVB-irradiated epidermis of XPA -deficient mice"Mutation Research. (in press).

    • Related Report
      1999 Annual Research Report

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Published: 1999-04-01   Modified: 2016-04-21  

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